|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
11-533 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 621.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 11 VVLFCLALSLLALMPTLFPN---SSPDWLKKSF-DPLHLGLDLQGGMHLVLGVDVEKAVESRIDGIVDQVETELKEKDII 86
Cdd:PRK05812 5 LILLVLLIGLLYALPNLRGAlapATPEWLPALGaKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 87 FKRVsrvgndrlVVVVYDDEAGKQVDAfmadggyrdlepltletqggYIEKYFRFSSSAVASIQDNAVKQALETLRNRID 166
Cdd:PRK05812 85 YGGV--------EITFRDAEDRDKAIA--------------------LLRKLSSLTEAELKEITEEALEQAIEIIRNRVN 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 167 QFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVaenidlqaaakgvlppgtqllyerqvdrrsgavtq 246
Cdd:PRK05812 137 ELGVAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV----------------------------------- 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 247 tplvvydKTVLTGDLVSDAQVRIDPRfNEPYVSIDFNAVGAKRFDQITASNVGKRMAIVLDDTVYSAPFIRERISGGSAQ 326
Cdd:PRK05812 182 -------PVILTGDDITDASASFDQQ-GQPVVNITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQ 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 327 ISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNL 406
Cdd:PRK05812 254 ITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANL 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 407 VFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLIAALVLF 486
Cdd:PRK05812 334 VLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILY 413
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 499660903 487 QFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQ-VKRLSI 533
Cdd:PRK05812 414 ALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKrLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
1-533 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 565.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 1 MSKSIKLRGGVVLFCLALSLLALMPtlfpnsspdwlkkSFDPLHLGLDLQGGMHLVLGVDVEKAVESRIDGIvdqvetel 80
Cdd:COG0342 2 KAKFLLWRLLLLLLVVALSLVAPNG-------------PAKPIKLGLDLQGGVHLLLEVDTDAALDEDGDGI-------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 81 kekdiifkrvsrvgndrlvvvvyddeagkqvdafmadggyrdlepltletqggyiekyfrfsssavASIQDNAVKQALET 160
Cdd:COG0342 61 ------------------------------------------------------------------REVTEEALDQAIEI 74
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 161 LRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAakgvLPPGTQLLYERQvdrr 240
Cdd:COG0342 75 LRNRVNELGVSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRD---- 146
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 241 sgavtQTPLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQITASNVGKRMAIVLDDTVYSAPFIRERI 320
Cdd:COG0342 147 -----GQPYLLLGPVVLTGDDLTDASAGFDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPI 221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 321 SGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANL 400
Cdd:COG0342 222 TGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANI 301
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 401 ALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLI 480
Cdd:COG0342 302 ALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLI 381
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 499660903 481 AALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKRLSI 533
Cdd:COG0342 382 AAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
139-519 |
2.38e-161 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 464.07 E-value: 2.38e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 139 FRFSSSAVASIQDNAVKQALETLRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENI-DL 217
Cdd:TIGR01129 23 LKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFRLVDDEStSP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 218 QAAAKGVLPPGTQLLYERQVDRRSgavtqtpLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQITASN 297
Cdd:TIGR01129 103 DDALAGNVPAGSELLDSRSGDPKY-------YLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQAN 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 298 VGKRMAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVI 377
Cdd:TIGR01129 176 IGKRLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 378 IGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSAR 457
Cdd:TIGR01129 256 IGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVR 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499660903 458 NALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIF 519
Cdd:TIGR01129 336 QAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
359-525 |
1.58e-14 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 71.87 E-value: 1.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 359 TVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYY-NLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVD 437
Cdd:pfam02355 20 TVGPTVGSELARKAVLALLFALLLILIYVGLRFeWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 438 ANVLIYERIREELR--LGKSARNALEAGYSKAF-LTIMdANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFV 514
Cdd:pfam02355 100 DTVVVFDRVRENLRkkTRATLNEIMNLSINQTLtRTIN-TSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSSIFI 178
|
170
....*....|.
gi 499660903 515 SRVIFDFFLER 525
Cdd:pfam02355 179 ASPILLDLGER 189
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
283-519 |
1.11e-11 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 67.88 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 283 NAVGAKRFDQITASNVGKRMA------IVLDDTVYSApfireRISGGSAQISGSFDEQEATDLAIVLR-------AGSLP 349
Cdd:NF037998 350 NGLILSFNDKTTTSNFNQYLDekiknyILNNDTINGT-----KTGAGAGSNTNSNQLIVATSTETIARtiealinQTTSG 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 350 APVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIV 429
Cdd:NF037998 425 FTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIF 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 430 LTLGMAVDANVLIYERIREELRLGK-SARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASL 508
Cdd:NF037998 505 IAIGLVLESCSLLFEAFKKHLYKNKrSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISL 584
|
250
....*....|.
gi 499660903 509 FTAIFVSRVIF 519
Cdd:NF037998 585 VLVIIVARLMI 595
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
11-533 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 621.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 11 VVLFCLALSLLALMPTLFPN---SSPDWLKKSF-DPLHLGLDLQGGMHLVLGVDVEKAVESRIDGIVDQVETELKEKDII 86
Cdd:PRK05812 5 LILLVLLIGLLYALPNLRGAlapATPEWLPALGaKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 87 FKRVsrvgndrlVVVVYDDEAGKQVDAfmadggyrdlepltletqggYIEKYFRFSSSAVASIQDNAVKQALETLRNRID 166
Cdd:PRK05812 85 YGGV--------EITFRDAEDRDKAIA--------------------LLRKLSSLTEAELKEITEEALEQAIEIIRNRVN 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 167 QFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVaenidlqaaakgvlppgtqllyerqvdrrsgavtq 246
Cdd:PRK05812 137 ELGVAEPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV----------------------------------- 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 247 tplvvydKTVLTGDLVSDAQVRIDPRfNEPYVSIDFNAVGAKRFDQITASNVGKRMAIVLDDTVYSAPFIRERISGGSAQ 326
Cdd:PRK05812 182 -------PVILTGDDITDASASFDQQ-GQPVVNITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQ 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 327 ISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNL 406
Cdd:PRK05812 254 ITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANL 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 407 VFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLIAALVLF 486
Cdd:PRK05812 334 VLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILY 413
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 499660903 487 QFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQ-VKRLSI 533
Cdd:PRK05812 414 ALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKrLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
1-533 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 565.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 1 MSKSIKLRGGVVLFCLALSLLALMPtlfpnsspdwlkkSFDPLHLGLDLQGGMHLVLGVDVEKAVESRIDGIvdqvetel 80
Cdd:COG0342 2 KAKFLLWRLLLLLLVVALSLVAPNG-------------PAKPIKLGLDLQGGVHLLLEVDTDAALDEDGDGI-------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 81 kekdiifkrvsrvgndrlvvvvyddeagkqvdafmadggyrdlepltletqggyiekyfrfsssavASIQDNAVKQALET 160
Cdd:COG0342 61 ------------------------------------------------------------------REVTEEALDQAIEI 74
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 161 LRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAakgvLPPGTQLLYERQvdrr 240
Cdd:COG0342 75 LRNRVNELGVSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRD---- 146
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 241 sgavtQTPLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQITASNVGKRMAIVLDDTVYSAPFIRERI 320
Cdd:COG0342 147 -----GQPYLLLGPVVLTGDDLTDASAGFDQQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPI 221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 321 SGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANL 400
Cdd:COG0342 222 TGGSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANI 301
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 401 ALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLI 480
Cdd:COG0342 302 ALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLI 381
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 499660903 481 AALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKRLSI 533
Cdd:COG0342 382 AAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
139-519 |
2.38e-161 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 464.07 E-value: 2.38e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 139 FRFSSSAVASIQDNAVKQALETLRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENI-DL 217
Cdd:TIGR01129 23 LKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFRLVDDEStSP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 218 QAAAKGVLPPGTQLLYERQVDRRSgavtqtpLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQITASN 297
Cdd:TIGR01129 103 DDALAGNVPAGSELLDSRSGDPKY-------YLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQAN 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 298 VGKRMAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVI 377
Cdd:TIGR01129 176 IGKRLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGADSIEAGIKAGL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 378 IGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSAR 457
Cdd:TIGR01129 256 IGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVR 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499660903 458 NALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIF 519
Cdd:TIGR01129 336 QAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
148-529 |
8.83e-161 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 475.49 E-value: 8.83e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 148 SIQDNAVKQALETLRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAAKGVLPP 227
Cdd:PRK13024 55 KADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPGVGGPVVGPD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 228 GTQllyerqvdrrsgavtqtPLVVYDKTVLTGDLVSDAQVRIDPR-FNEPYVSIDFNAVGAKRFDQITASNV-----GKR 301
Cdd:PRK13024 135 EGK-----------------DTAVLNPVLLSGDDLTDAGAKFDQDqTNRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNR 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 302 MAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCV 381
Cdd:PRK13024 198 IAIVLDPKVISAPTVNQPINGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 382 AVVLAMGIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALE 461
Cdd:PRK13024 278 LIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFK 357
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499660903 462 AGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVK 529
Cdd:PRK13024 358 KGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKRGDKK 425
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
14-531 |
7.10e-148 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 445.70 E-value: 7.10e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 14 FCLALSLLALMPTLFPNSS----PDWLKKsfDPLHLGLDLQGGMHLVLGVDVEKAVESRIDGIVDQVETELKEKDIIFKR 89
Cdd:PRK14726 14 LVVLAGVAIAAPNLLSEAQlaslPSWLPH--RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 90 VSrvGNDRLVVVVYDDEAGKQ---------VDAFMADG-GYRDLEPLTLEtQGGYIEKYFRFSSSAVASIQDNAVKQALE 159
Cdd:PRK14726 92 LT--GNGQTVQVRITDPAQTQaavdalkplTAPVSAGGlGGSSIQELTLQ-EGGEGQLRLQLTDAGIDYRVSSALTQSIE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 160 TLRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAAKGVLPPGTQLLYERQVdr 239
Cdd:PRK14726 169 VVRRRVAELGTTEPLIRRQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYSLDD-- 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 240 rsgavTQTPLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQITASNVGKRMAIVLDDTVYSAPFIRER 319
Cdd:PRK14726 247 -----PPVPYLVERRAFVSGENLVDAQPVFDPQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVLDGQVISAPVIDEA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 320 ISGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVAN 399
Cdd:PRK14726 322 ITGGEGRISGNFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAV 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 400 LALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTL 479
Cdd:PRK14726 402 IALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTIL 481
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 499660903 480 IAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKRL 531
Cdd:PRK14726 482 IAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRRPKHL 533
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
32-518 |
3.13e-120 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 366.32 E-value: 3.13e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 32 SPDWLKK-SFDPLHLGLDLQGGMHLVLGVDVEKAVESRIDGIVDQVETELKEKDIIFKRVSRVGNDRLVVVVYDDEAGKQ 110
Cdd:PRK12933 114 APKWLQNmGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQRIRGVSVRLDDSDQLAVTTPDNDARSA 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 111 VDAFMadggyRDLEPLTLETQGGYIEKYFRFSSSAVASIQDNAVKQALETLRNRIDQFGVSETVLQRQGSDRILVQLPGI 190
Cdd:PRK12933 194 VRQFI-----QQNYPGWQVTNSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGV 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 191 KDPRRAVDLLGKTALLEFKMVAENIDLqaaakgvlppGTQLLYERQvdrrsgavtQTPLVVYDKTVLTGDLVSDAQVRID 270
Cdd:PRK12933 269 QDPAAAKNVIGATASLAFYEVKESGSV----------NAKVLKDKN---------GRPVYVARRPVLGGEHIVDARASLG 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 271 pRFNEPYVSIDFNAVGAKRFDQITASNVGKRMAivlddTVYSAPFIRER---------ISGGSAQ--------ISGSFDE 333
Cdd:PRK12933 330 -EMGMAEVNISLDRAGGKKMSDFSRDNIGKPMA-----TSYSEYSRDEQgktkqseevISVATIQsqlgdrfrITGAGSY 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 334 QEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAML 413
Cdd:PRK12933 404 QEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLL 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 414 SLCK-ASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGP 492
Cdd:PRK12933 484 ALIPgAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGP 563
|
490 500
....*....|....*....|....*.
gi 499660903 493 VKGFAVTLSIGIAASLFTAIFVSRVI 518
Cdd:PRK12933 564 IQGFALTLGLGLLTSMFTGIFASRAL 589
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
152-518 |
3.65e-68 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 233.74 E-value: 3.65e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 152 NAVKQALET----LRNRIDQFGVSETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAAKGVLPP 227
Cdd:PRK13023 63 NAGKTDLETtaniMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 228 GTQLLYERQVDRRSGAVTQTPlvvydktVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQITASNVGKRMAIVLD 307
Cdd:PRK13023 143 DSEIVYSFDDPPVGYLLKKTP-------ILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 308 DTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAM 387
Cdd:PRK13023 216 NQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFM 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 388 GIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKA 467
Cdd:PRK13023 296 VLSYGILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRA 375
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 499660903 468 FLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVI 518
Cdd:PRK13023 376 LSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLL 426
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
295-531 |
5.13e-59 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 212.03 E-value: 5.13e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 295 ASNVGKRMAIVLDDTVYSAPFIRERISGgSAQISGSFDEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIHRGIW 374
Cdd:PRK12911 835 SGGRGWRMAVVLDGYVVSDPVLNVPLKD-HASVSGKFSHREVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGII 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 375 SVIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGK 454
Cdd:PRK12911 914 SVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSR 993
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499660903 455 SARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKRL 531
Cdd:PRK12911 994 SLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFMIWMNKTQETQL 1070
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
358-512 |
1.40e-51 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 174.37 E-value: 1.40e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 358 RTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLN-LVFIMAMLSLCKASLTLPGIGGIVLTLGMAV 436
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLFGATLTLPGIAGLLTIIGYSV 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499660903 437 DANVLIYERIREELRL--GKSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAI 512
Cdd:TIGR00916 115 DDTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
159-516 |
9.62e-28 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 115.36 E-value: 9.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 159 ETLRNRIDQFGVSETVLQRQGSDRILVQLPGIkDPRRAVDLLGKTALLEFKMVAENIDlqaaakgvlppgtqllyerqvd 238
Cdd:PRK08343 70 EILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQTPGNN---------------------- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 239 rrsgavtqtplvvyDKTVLTG-DLVSDAQVRIDPRFNEPYVSIDFNAVGAKRFDQI------TASNVGKRMAIVLDDTVY 311
Cdd:PRK08343 127 --------------NETVLTGdDIESVGSPSQDPSGGAWGVPFTLSEDGAEKFAEVakgkgaTDDPSGHPLDMYLDGELI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 312 SAPFIRERI-----SGGSAQISGSF-----DEQEATDLAIVLRAGSLPAPVTILENRTVGPSLGLDSIhrgIWSVIIGCV 381
Cdd:PRK08343 193 YAAPLSPDLasglaSGPVVITVGSTgtteeAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFK---KGSLIAGLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 382 AV--VLAMgIYYN-------LAGLVANLALVLnlvFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRL 452
Cdd:PRK08343 270 ALlaVALV-VFLRyrepriaLPMVITSLSEVI---IILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLHEGKV 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499660903 453 GKsaRNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIaaslFTAIFVSR 516
Cdd:PRK08343 346 PS--RKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGV----LIGVLITR 403
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
305-514 |
1.93e-15 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 77.01 E-value: 1.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 305 VLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAG--SLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVA 382
Cdd:COG0341 66 ALEEAGLGDASVQTFGSDNDVLIRTPPLDGESAEEVEKVRAAlkEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIG 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 383 VVLAMGIYYNLA-GLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIvLT-LGMAVDANVLIYERIREELRLGKSarnal 460
Cdd:COG0341 146 ILIYIAFRFEWRfAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAAL-LTiIGYSLNDTVVVFDRIRENLRKYRK----- 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499660903 461 eagysKAFLTIMDANI------------TTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFV 514
Cdd:COG0341 220 -----MTLAEIINLSInqtlsrtintslTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFI 280
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
324-530 |
4.42e-15 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 78.35 E-value: 4.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 324 SAQISGSFDEQEATDLAIV--LRAGSLPA-PVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLA-GLVAN 399
Cdd:PRK13024 528 LVRTYGILSDDEEADTEIVakLKNALKNDkGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTfSLGAI 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 400 LALVLNLVFIMAMLSLCKASLTLPGIGGIvLTL-GMAVDANVLIYERIREELRLGKSAR------NALEAGYSKAFLTim 472
Cdd:PRK13024 608 LALLHDVLIVIGFFSLFRLEVDLTFIAAI-LTIiGYSINDTVVVFDRIRENLRLYKKKDlreivnKSINQTLSRTINT-- 684
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499660903 473 daNITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFdFFLERYQVKR 530
Cdd:PRK13024 685 --SLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLW-LDLEKRRLKK 739
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
359-515 |
1.50e-14 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 73.46 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 359 TVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLA-GLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVD 437
Cdd:TIGR00966 87 AVGPSVGGELARKAVLALLAALVLILIYITVRFEWRfALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSIN 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 438 ANVLIYERIREELRL--GKSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVS 515
Cdd:TIGR00966 167 DTVVVFDRIRENLRKytRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIFIA 246
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
359-525 |
1.58e-14 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 71.87 E-value: 1.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 359 TVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYY-NLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVD 437
Cdd:pfam02355 20 TVGPTVGSELARKAVLALLFALLLILIYVGLRFeWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 438 ANVLIYERIREELR--LGKSARNALEAGYSKAF-LTIMdANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFV 514
Cdd:pfam02355 100 DTVVVFDRVRENLRkkTRATLNEIMNLSINQTLtRTIN-TSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVGTYSSIFI 178
|
170
....*....|.
gi 499660903 515 SRVIFDFFLER 525
Cdd:pfam02355 179 ASPILLDLGER 189
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
332-532 |
2.16e-13 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 71.04 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 332 DEQEATDLAIVLraGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYN--LAgLVANLALVLNLVFI 409
Cdd:PRK13021 90 TAQSNVDIQQAL--APLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEwrLA-SGALFALVHDVIFV 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 410 MAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKS------ARNALEAGYSKAFLTimdaNITTLIAAL 483
Cdd:PRK13021 167 LAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKlaiqeiNNQAIVATFSRTMVT----SGTTLMTVG 242
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499660903 484 VLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFF---LERYQVKRLS 532
Cdd:PRK13021 243 ALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLglsPEHYKVQVIS 294
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
283-519 |
1.11e-11 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 67.88 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 283 NAVGAKRFDQITASNVGKRMA------IVLDDTVYSApfireRISGGSAQISGSFDEQEATDLAIVLR-------AGSLP 349
Cdd:NF037998 350 NGLILSFNDKTTTSNFNQYLDekiknyILNNDTINGT-----KTGAGAGSNTNSNQLIVATSTETIARtiealinQTTSG 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 350 APVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIV 429
Cdd:NF037998 425 FTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIF 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 430 LTLGMAVDANVLIYERIREELRLGK-SARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASL 508
Cdd:NF037998 505 IAIGLVLESCSLLFEAFKKHLYKNKrSIEESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISL 584
|
250
....*....|.
gi 499660903 509 FTAIFVSRVIF 519
Cdd:NF037998 585 VLVIIVARLMI 595
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
376-514 |
1.24e-10 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 64.11 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 376 VIIGCVAVVLAMGIYYN--LAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLG 453
Cdd:COG1033 224 FPLALLLILLLLFLFFRslRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKG 303
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499660903 454 KSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFV 514
Cdd:COG1033 304 LDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTL 364
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
366-514 |
1.44e-09 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 60.64 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 366 LDSIHRG-IWSVIIGCVAVVLAMGIYYN--LAGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLI 442
Cdd:COG1033 600 NESVIESqIRSLLLALLLIFLLLLLAFRslRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHF 679
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499660903 443 YERIREELRLGKSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFV 514
Cdd:COG1033 680 LSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLL 751
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
332-515 |
5.44e-09 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 58.86 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 332 DEQEATdLAIVLRaGSLPAPVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLA-GLVANLALVLNLVFIM 410
Cdd:PRK13023 542 DDAEQT-VAVKLR-GEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQlALGAVLSTLHDVVILS 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 411 AMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSA--RNALEAGYSKAFLTIMDANITTLIAALVLFQF 488
Cdd:PRK13023 620 GMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAplPAIIDASINQTLSRTLLTSFVTFLAHVPLYAF 699
|
170 180
....*....|....*....|....*..
gi 499660903 489 GTGPVKGFAVTLSIGIAASLFTAIFVS 515
Cdd:PRK13023 700 GGSEIRMFALALSVGIIVASYSSIFIA 726
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
374-525 |
1.85e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 50.87 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 374 WSVIIGCVAVVLAMGIYYNLA-----GLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIRE 448
Cdd:PRK14726 672 MAATLGVLAALAAILIYIWIRfewqfAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRE 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 449 ELR------LGKSARNALEAGYSKAFLTimdaNITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFF 522
Cdd:PRK14726 752 NLRrykkmpLPILIDASINQTLSRTVLT----SATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIVF 827
|
...
gi 499660903 523 LER 525
Cdd:PRK14726 828 KLR 830
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
359-533 |
1.85e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 50.61 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 359 TVGPSLGLDsIHRGI---WSVIIGCVAVVLAMGIYYNLAGLVANL----ALVLNLVFIMAMLSLCKASLTLPGIGGIVLT 431
Cdd:TIGR00921 178 TGSPAINYD-IEREFgkdMGTTMAISGILVVLVLLLDFKRWWRPLlplvIILFGVAWVLGIMGWLGIPLYATTLLAVPML 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 432 LGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTA 511
Cdd:TIGR00921 257 IGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLT 336
|
170 180
....*....|....*....|....*
gi 499660903 512 IFVSRVI---FDFFLERYQVKRLSI 533
Cdd:TIGR00921 337 LLVLPALlqsIDIGREKVKKEIIAI 361
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
370-516 |
1.97e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 47.54 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 370 HRGIWSVIIGCVAVVLAMGI-YYNL-AGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIR 447
Cdd:COG4258 639 NDALWLLLLALLLILLLLLLrLRSLrRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYALFFTEGLL 718
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499660903 448 EELRLgksarnaleagySKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSR 516
Cdd:COG4258 719 DKGEL------------ARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLALLLAPLLAP 775
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
368-512 |
3.25e-04 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 43.44 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 368 SIHRGIWSVIIGCVAVVLAMGIYY-NL-AGLVANLALVLNLVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYER 445
Cdd:pfam00873 329 SIEEVVKTLLEAIVLVILVMFLFLqNWrATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVVEN 408
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499660903 446 IREELRL-GKSARNALEAGYSKAFLTIMdANITTLIAALVLFQFGTGpVKG-----FAVTLSIGIAASLFTAI 512
Cdd:pfam00873 409 IERVLEEnGLKPLEAAYKSMGEIGGALV-AIALVLSAVFLPILFLGG-LTGrifrqFAITIVLAILLSVLVAL 479
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
376-512 |
6.78e-04 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 42.45 E-value: 6.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 376 VIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIMAmlslckasltlpgiggivltLGMAVDANVLIYERIREELRLGKS 455
Cdd:COG2409 200 LLTAGLAVGVALGLLALLAAFTDVSSFAPNLLTMLG--------------------LGVGIDYALFLVSRYREELRAGED 259
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 499660903 456 ARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAI 512
Cdd:COG2409 260 REEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAAL 316
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
371-512 |
1.88e-03 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 40.35 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 371 RGIWSVIIGCVAVVLAMGIYYNLA-----------GLVANLALVLNLVFIMAMlSLCKASLTLpgigGIVLTLGMAVDAN 439
Cdd:pfam03176 144 LGLIEAVTLVVIFIILLIVYRSVVaallplltvglSLGAAQGLVAILAHILGI-GLSTFALNL----LVVLLIAVGTDYA 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499660903 440 VLIYERIREELRLGKSARNALEAGYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAI 512
Cdd:pfam03176 219 LFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAAL 291
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
396-531 |
1.91e-03 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 41.00 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 396 LVANLALVLNLVFImamlsLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELR------LGKSARNALEAGYSKAFL 469
Cdd:PRK12911 1271 LLATCAVLVALHFF-----LQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQeklftpMPILINDALQKTLGRTVM 1345
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499660903 470 TimdaNITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKRL 531
Cdd:PRK12911 1346 T----TATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERNSL 1403
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
420-515 |
2.35e-03 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 40.86 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 420 LTLpgiGGIVLTLGMAVDA------NVliyERIREElrlGKSARNALEAGYSKAFLTIMdANITTLIAALVLFQFGTGPV 493
Cdd:COG0841 386 LTL---FALVLAIGIVVDDaivvveNI---ERHMEE---GLSPLEAAIKGAREVAGAVI-ASTLTLVAVFLPLAFMGGIT 455
|
90 100
....*....|....*....|....*.
gi 499660903 494 ----KGFAVTLSIGIAASLFTAIFVS 515
Cdd:COG0841 456 gqlfRQFALTVAIALLISLFVALTLT 481
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
358-510 |
5.30e-03 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 39.14 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 358 RTVGPSLGLDSIHRGIWSVIIGCVAV-VLAMGIYYNLaglVANLALVL----NLVFIMAMLSLCKASLTLPGIGGIVLTL 432
Cdd:PRK08578 122 KQIGPTFGSQFQEQALKAVGFAFIGMaVVVFLIFRTP---VPSLAVILsafsDIIIALALMNLFGIELSLATVAALLMLI 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 433 GMAVDANVLIYERIREelRLGKsarnaLEAGYSKAFLTIMDANITTLIAALVLFQFGTGPV----KGFAVTLSIGIAASL 508
Cdd:PRK08578 199 GYSVDSDILLTTRVLK--RRGT-----FDESIKRAMRTGITMTLTTIAAMAVLYIVSTIPQaevlANIAAVLIFGLLADL 271
|
..
gi 499660903 509 FT 510
Cdd:PRK08578 272 MN 273
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
318-514 |
9.84e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 38.66 E-value: 9.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 318 ERISGGSAQISGSFDEQEATDLA----IVLRAGSLPAPVTILENRTVGPSLGLDSIHRGI-----WSVIIGCVAVVLAMG 388
Cdd:TIGR00921 506 GYISGGQIKVAVIQVQLKQGEPKvqgrKILRDVQHEHPPPGVKVGVTGLPVAFAEMHELVnegmrRMTIAGAILVLMILL 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499660903 389 IYYN-----LAGLVANLALVLNLVFIMAmLSLCKASLTLPGIGGIVLTLGMavDANVLIYERIREElRLGKSARNALEAG 463
Cdd:TIGR00921 586 AVFRnpikaVFPLIAIGSGILWAIGLMG-LRGIPSFLAMATTISIILGLGM--DYSIHLAERYFEE-RKEHGPKEAITHT 661
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 499660903 464 YSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFV 514
Cdd:TIGR00921 662 MERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVV 712
|
|
| |
