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Conserved domains on  [gi|504300011|ref|WP_014487113|]
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periplasmic flagellar collar protein FlcA [Brachyspira intermedia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1008-1271 1.70e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 1.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1008 IYQDNYEqvKALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAM 1087
Cdd:COG2956    19 LLNGQPD--KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1088 EILNTAAlplyESNPFYRGkefVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFyREKDYEKAKQHYQ 1167
Cdd:COG2956    97 ELLEKLL----ELDPDDAE---ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL-EQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1168 TAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQV--L 1245
Cdd:COG2956   169 KALK-LDPD--CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDpsD 245

                         250       260
                  ....*....|....*....|....*.
gi 504300011 1246 SKRDRLGRLEMRTESDFILVSYLASL 1271
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQ 271
MSCRAMM_ClfA super family cl41352
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 71-451 1.38e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


The actual alignment was detected with superfamily member NF033609:

Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 75.72  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   71 NSDNNTSDDIDNLQLPEDFDNPLSDDPddlgLPEDLDNDKLSDDIDDLGlPEDLGNDKVSDDVDDLGLPEDLDNDKVSDd 150
Cdd:NF033609  530 NNGSGSGDGIDKPVVPEQPDEPGEIEP----IPEDSDSDPGSDSGSDSS-NSDSGSDSGSDSTSDSGSDSASDSDSASD- 603

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  151 vdnlelpEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPE 230
Cdd:NF033609  604 -------SDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 676

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  231 DLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSadidnlelpeDLDNDKVSAdiddlglpEDLDNDKVS 310
Cdd:NF033609  677 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS----------DSDSDSDSD--------SDSDSDSDS 738

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  311 ADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKI 390
Cdd:NF033609  739 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 818

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504300011  391 AMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDL----------PNIESNDDQKSNIND 451
Cdd:NF033609  819 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSesgsnnnvvpPNSPKNGTNASNKNE 889
NlpI super family cl34822
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
838-935 9.44e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG4785:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 9.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  838 IYKPVMANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRIT 917
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                          90
                  ....*....|....*...
gi 504300011  918 FGYYYRKKGEKELSVEDY 935
Cdd:COG4785   147 RGIALYYLGRYELAIADL 164
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1008-1271 1.70e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 1.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1008 IYQDNYEqvKALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAM 1087
Cdd:COG2956    19 LLNGQPD--KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1088 EILNTAAlplyESNPFYRGkefVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFyREKDYEKAKQHYQ 1167
Cdd:COG2956    97 ELLEKLL----ELDPDDAE---ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL-EQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1168 TAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQV--L 1245
Cdd:COG2956   169 KALK-LDPD--CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDpsD 245

                         250       260
                  ....*....|....*....|....*.
gi 504300011 1246 SKRDRLGRLEMRTESDFILVSYLASL 1271
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQ 271
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 71-451 1.38e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 75.72  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   71 NSDNNTSDDIDNLQLPEDFDNPLSDDPddlgLPEDLDNDKLSDDIDDLGlPEDLGNDKVSDDVDDLGLPEDLDNDKVSDd 150
Cdd:NF033609  530 NNGSGSGDGIDKPVVPEQPDEPGEIEP----IPEDSDSDPGSDSGSDSS-NSDSGSDSGSDSTSDSGSDSASDSDSASD- 603

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  151 vdnlelpEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPE 230
Cdd:NF033609  604 -------SDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 676

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  231 DLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSadidnlelpeDLDNDKVSAdiddlglpEDLDNDKVS 310
Cdd:NF033609  677 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS----------DSDSDSDSD--------SDSDSDSDS 738

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  311 ADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKI 390
Cdd:NF033609  739 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 818

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504300011  391 AMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDL----------PNIESNDDQKSNIND 451
Cdd:NF033609  819 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSesgsnnnvvpPNSPKNGTNASNKNE 889
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 85-436 1.35e-11

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 69.55  E-value: 1.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   85 LPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDK 164
Cdd:NF033609  557 IPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDS 636

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  165 VSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNL 244
Cdd:NF033609  637 ASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 716

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  245 ELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDN 324
Cdd:NF033609  717 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  325 DKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKIAMDINNDN------ 398
Cdd:NF033609  797 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNnvvppn 876

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 504300011  399 --------SNKNDIHSEKlpvlddLPLPDTlpnideGREYEYNEDL 436
Cdd:NF033609  877 spkngtnaSNKNEAKDSK------EPLPDT------GSEDEANTSL 910
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 44-333 1.96e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 62.23  E-value: 1.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   44 ASSMPAEDNGLPSIDDLDSLDGLDFQDNSDNNTSDDIDNLQLPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPED 123
Cdd:NF033609  574 SNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSD 653

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  124 LGNDKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSA 203
Cdd:NF033609  654 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 733

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  204 DIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELP 283
Cdd:NF033609  734 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 813

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 504300011  284 EDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDD 333
Cdd:NF033609  814 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSD 863
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1008-1242 3.23e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 3.23e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1008 IYQDNYEQVKALQNHINLLKkdyIDDEVYP---KLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEAR----- 1079
Cdd:TIGR02917  474 IYLGKGDLAKAREAFEKALS---IEPDFFPaaaNLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRtgnee 550

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1080 -----------------------------LKHYDRAMEILNTAALpLYESNPFYrgkefvYNMLGQIYYNLGEYGNAVKN 1130
Cdd:TIGR02917  551 eavawlekaaelnpqeiepalalaqyylgKGQLKKALAILNEAAD-AAPDSPEA------WLMLGRAQLAAGDLNKAVSS 623

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1131 FTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAYDNLAPNLRSDKLLYNLswiYYSDGEYDRAFEGFNALFQKN 1210
Cdd:TIGR02917  624 FKKLLALQPDSALALLLLADAY-AVMKNYAKAITSLKRALELKPDNTEAQIGLAQL---LLAAKRTESAKKIAKSLQKQH 699

                          250       260       270
                   ....*....|....*....|....*....|..
gi 504300011  1211 PSNSVVSYALGNSLLHLDKANLANGFYRNALS 1242
Cdd:TIGR02917  700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
838-935 9.44e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 9.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  838 IYKPVMANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRIT 917
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                          90
                  ....*....|....*...
gi 504300011  918 FGYYYRKKGEKELSVEDY 935
Cdd:COG4785   147 RGIALYYLGRYELAIADL 164
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 192-487 1.51e-06

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 52.99  E-value: 1.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  192 LPEDLDNDKVSadiDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDND 271
Cdd:NF033609  557 IPEDSDSDPGS---DSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD 633

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  272 KVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDD 351
Cdd:NF033609  634 SDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 713

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  352 LGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKIAMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYE 431
Cdd:NF033609  714 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 793

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 504300011  432 YNEDLPNIESNDDQKSNINDLELDDISDSLDDILEDEDSNLDDILSDDELDEEDKN 487
Cdd:NF033609  794 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849
TPR_12 pfam13424
Tetratricopeptide repeat;
1110-1171 3.86e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 3.86e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1110 VYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDAN--------YNLANVYFYREkDYEKAKQHYQTAYD 1171
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpltattlLNLGRLYLELG-RYEEALELLERALA 73
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 163-331 3.88e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 48.07  E-value: 3.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  163 DKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADID 242
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  243 NLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDL 322
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202

                         170
                  ....*....|
gi 504300011  323 DNDK-VSADI 331
Cdd:PRK05901  203 DAKLtATADP 212
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
 69-487 3.22e-04

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 45.39  E-value: 3.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   69 QDNSDNNTSDDIDNLQLPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVS 148
Cdd:COG5271   285 EDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDA 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  149 DDVDNLELPEDLDNDKVSADIDNlELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDND----KVSADID 224
Cdd:COG5271   365 EDEAAGEAADESEGADTDAAADE-ADAAADDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDEstdvTSAEDDI 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  225 NLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKvSADIDNLELPEDLDNDKVSADIDDLGLPEDL 304
Cdd:COG5271   444 ATDEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDG-DEEEAEEDAEAEADSDELTAEETSADDGADT 522

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  305 DNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDK 384
Cdd:COG5271   523 DAAADPEDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASED 602

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  385 ELEDKIAMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDLPNIESNDdqksniNDLELDDISDSLDDI 464
Cdd:COG5271   603 EAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEAS------ADESEEEAEDESETS 676

                         410       420
                  ....*....|....*....|...
gi 504300011  465 LEDEDSNLDDILSDDELDEEDKN 487
Cdd:COG5271   677 SEDAEEDADAAAAEASDDEEETE 699
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1075-1176 8.04e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.53  E-value: 8.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1075 DYEARLKHYDRAMEIlntaalplyESNPFYRGKeFVYNmLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFY 1154
Cdd:CHL00033   50 EYAEALQNYYEAMRL---------EIDPYDRSY-ILYN-IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118

                          90       100       110
                  ....*....|....*....|....*....|....
gi 504300011 1155 R------EKDYEKAKQHYQTAYD------NLAPN 1176
Cdd:CHL00033  119 RgeqaieQGDSEIAEAWFDQAAEywkqaiALAPG 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1110-1138 4.89e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 4.89e-03
                            10        20
                    ....*....|....*....|....*....
gi 504300011   1110 VYNMLGQIYYNLGEYGNAVKNFTEALAIN 1138
Cdd:smart00028    3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1008-1271 1.70e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 1.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1008 IYQDNYEqvKALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAM 1087
Cdd:COG2956    19 LLNGQPD--KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1088 EILNTAAlplyESNPFYRGkefVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFyREKDYEKAKQHYQ 1167
Cdd:COG2956    97 ELLEKLL----ELDPDDAE---ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL-EQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1168 TAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQV--L 1245
Cdd:COG2956   169 KALK-LDPD--CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDpsD 245

                         250       260
                  ....*....|....*....|....*.
gi 504300011 1246 SKRDRLGRLEMRTESDFILVSYLASL 1271
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1039-1243 8.40e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.17  E-value: 8.40e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1039 LAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNTAAlplyESNPfyrGKEFVYNMLGQIY 1118
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLL----ERDP---DRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1119 YNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFyREKDYEKAKQHYQTAydnLAPNLRSDKLLYNLSWIYYSDGEYDR 1198
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE-QEGDWEKAIEVLERL---LKLGPENAHAYCELAELYLEQGDYDE 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 504300011 1199 AFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQ 1243
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1110-1242 1.57e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.82  E-value: 1.57e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1110 VYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAydnLAPNLRSDKLLYNLSWI 1189
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAY-LRLGRYEEALADYEQA---LELDPDDAEALNNLGLA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 504300011 1190 YYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALS 1242
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE 138
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1064-1255 1.65e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.82  E-value: 1.65e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1064 PNNLESIVGYADYEARLKHYDRAMEILNTAalplYESNPFYrgkEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPD 1143
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKA----LELDPDD---AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1144 ANYNLANVYfYREKDYEKAKQHYQTAydnLAPNLRSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNS 1223
Cdd:COG0457    78 ALNNLGLAL-QALGRYEEALEDYDKA---LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                         170       180       190
                  ....*....|....*....|....*....|..
gi 504300011 1224 LLHLDKANLANGFYRNALSQVLSKRDRLGRLE 1255
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAALLAAALGE 185
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 877-1169 1.37e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 78.62  E-value: 1.37e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  877 QIKWYNKyARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYRKKGEKELSVEdytlgeeLYNDMLvytDKKKEKE 956
Cdd:COG2956     8 ALGWYFK-GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIR-------IHQKLL---ERDPDRA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  957 TIYDERGLLMISRARtlvepnyYDIAYNNYRDMINFFGDGVVPRKRamLIKIYQDNYEQVKALQNHINLLKKDYIDDEVY 1036
Cdd:COG2956    77 EALLELAQDYLKAGL-------LDRAEELLEKLLELDPDDAEALRL--LAEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1037 PKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNTAalplYESNPFYrgkEFVYNMLGQ 1116
Cdd:COG2956   148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA----LEQDPDY---LPALPRLAE 220

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 504300011 1117 IYYNLGEYGNAVKNFTEALAINSvYPDANYNLANVYFyREKDYEKAKQHYQTA 1169
Cdd:COG2956   221 LYEKLGDPEEALELLRKALELDP-SDDLLLALADLLE-RKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 842-1243 1.92e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 78.23  E-value: 1.92e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  842 VMANKYYNQGLVSISKGAYDDAERNFSEgerlkpkqikwynkyarayidretfsyalkkiqgALDIKPRDFETRITFGYY 921
Cdd:COG2956     6 AAALGWYFKGLNYLLNGQPDKAIDLLEE----------------------------------ALELDPETVEAHLALGNL 51

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  922 YRKKGEKElsvedytlgeelyndmlvytdkkkeketiydergllmisrartlvepnyydiaynnyrdminffgdgvvprk 1001
Cdd:COG2956    52 YRRRGEYD------------------------------------------------------------------------ 59

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1002 ramlikiyqdnyeqvKALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLK 1081
Cdd:COG2956    60 ---------------RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1082 HYDRAMEILNTAAlplyESNPfyrGKEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFyREKDYEK 1161
Cdd:COG2956   125 DWEKAIEVLERLL----KLGP---ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL-EQGDYEE 196

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1162 AKQHYQTAydnLAPNLRSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVsYALGNSLLHLDKANLANGFYRNAL 1241
Cdd:COG2956   197 AIAALERA---LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQL 272


                  ..
gi 504300011 1242 SQ 1243
Cdd:COG2956   273 RR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1034-1255 1.48e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.04  E-value: 1.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1034 EVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNTAAlplyESNPfyrGKEFVYNM 1113
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL----ELDP---DDAEALNN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1114 LGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAydnLAPNLRSDKLLYNLSWIYYSD 1193
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL-LELGRYDEAIEAYERA---LELDPDDADALYNLGIALEKL 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504300011 1194 GEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQVLSKRDRLGRLE 1255
Cdd:COG0457   158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 71-451 1.38e-13

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 75.72  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   71 NSDNNTSDDIDNLQLPEDFDNPLSDDPddlgLPEDLDNDKLSDDIDDLGlPEDLGNDKVSDDVDDLGLPEDLDNDKVSDd 150
Cdd:NF033609  530 NNGSGSGDGIDKPVVPEQPDEPGEIEP----IPEDSDSDPGSDSGSDSS-NSDSGSDSGSDSTSDSGSDSASDSDSASD- 603

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  151 vdnlelpEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPE 230
Cdd:NF033609  604 -------SDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 676

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  231 DLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSadidnlelpeDLDNDKVSAdiddlglpEDLDNDKVS 310
Cdd:NF033609  677 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS----------DSDSDSDSD--------SDSDSDSDS 738

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  311 ADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKI 390
Cdd:NF033609  739 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 818

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504300011  391 AMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDL----------PNIESNDDQKSNIND 451
Cdd:NF033609  819 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSesgsnnnvvpPNSPKNGTNASNKNE 889
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1039-1241 1.04e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 1.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1039 LAKYLLDKDDFYGSRILFENLLTAYPNN--LESIVGYADYEARLKHYDRAMEILNTAALPLYESNPFYRGKEFVYNMLGQ 1116
Cdd:COG3914     7 LALAALAAAALLAAAAAAELALAAELEAaaLAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1117 IYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAYdNLAPNLRSdkLLYNLSWIYYSDGEY 1196
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLL-LALGRLEEALAALRRAL-ALNPDFAE--AYLNLGEALRRLGRL 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 504300011 1197 DRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNAL 1241
Cdd:COG3914   163 EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1110-1243 1.44e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 1.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1110 VYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFYReKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWI 1189
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-GDLDEAIVLLHEALE-LDPD--EPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 504300011 1190 YYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQ 1243
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1009-1234 1.63e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 1.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1009 YQDNYEQVKALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAME 1088
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALA 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1089 ILNTAAlplyESNPfyrgkEFV--YNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFyREKDYEKAKQHY 1166
Cdd:COG3914   134 ALRRAL----ALNP-----DFAeaYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ-DLGRLEEAIAAY 203

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1167 QTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRA--FEGFNALFQKNPSNSVVSYALgnSLLHLDKANLAN 1234
Cdd:COG3914   204 RRALE-LDPD--NADAHSNLLFALRQACDWEVYdrFEELLAALARGPSELSPFALL--YLPDDDPAELLA 268
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1111-1214 2.34e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.41  E-value: 2.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1111 YNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFYREkDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIY 1190
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEELLERALA-LDPD--NPEALYLLGLAA 95

                          90       100
                  ....*....|....*....|....
gi 504300011 1191 YSDGEYDRAFEGFNALFQKNPSNS 1214
Cdd:COG4235    96 FQQGDYAEAIAAWQKLLALLPADA 119
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1067-1213 3.36e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.21  E-value: 3.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1067 LESIVGYADYEARLKHYDRAMEILNtAALPLYESNPFYrgkefvYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANY 1146
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLE-KALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504300011 1147 NLANVYfYREKDYEKAKQHYQTAydnLAPNLRSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSN 1213
Cdd:COG4783    77 NLGLAL-LKAGDYDEALALLEKA---LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1075-1238 6.58e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 6.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1075 DYEARLKHYDRAMEIlntaalplyesNPFYrgkEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfY 1154
Cdd:COG3914    93 RYEEALALYRRALAL-----------NPDN---AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL-R 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1155 REKDYEKAKQHYQTAYdNLAPNLRsdKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLAN 1234
Cdd:COG3914   158 RLGRLEEAIAALRRAL-ELDPDNA--EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYD 234


                  ....
gi 504300011 1235 GFYR 1238
Cdd:COG3914   235 RFEE 238
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1038-1169 8.92e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 8.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1038 KLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNtAALPLYESNPFYrgkefvYNMLGQI 1117
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLH-EALELDPDEPEA------RLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 504300011 1118 YYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTA 1169
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY-RALGRPDEAIAALEKA 132
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1056-1176 1.14e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.49  E-value: 1.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1056 FENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNTAaLPLYESNPFYrgkefvYNMLGQIYYNLGEYGNAVKNFTEAL 1135
Cdd:COG4235     6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKA-LRLDPDNADA------LLDLAEALLAAGDTEEAEELLERAL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 504300011 1136 AINSVYPDANYNLANVYFyREKDYEKAKQHYQTAYDNLAPN 1176
Cdd:COG4235    79 ALDPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPAD 118
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 85-436 1.35e-11

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 69.55  E-value: 1.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   85 LPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDK 164
Cdd:NF033609  557 IPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDS 636

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  165 VSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNL 244
Cdd:NF033609  637 ASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 716

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  245 ELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDN 324
Cdd:NF033609  717 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  325 DKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKIAMDINNDN------ 398
Cdd:NF033609  797 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNnvvppn 876

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 504300011  399 --------SNKNDIHSEKlpvlddLPLPDTlpnideGREYEYNEDL 436
Cdd:NF033609  877 spkngtnaSNKNEAKDSK------EPLPDT------GSEDEANTSL 910
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1053-1213 1.83e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.24  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1053 RILFENLLTAYPNNLESIVGYADYEARLKHYDRAmeilnTAALPLYESNPFYRGKEFVYNMLGQIYYNLGEYGNAVKNFT 1132
Cdd:COG4785    23 AILLAALLFAAVLALAIALADLALALAAAALAAA-----ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFD 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1133 EALAINSVYPDANYNLAnVYFYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPS 1212
Cdd:COG4785    98 QALELDPDLAEAYNNRG-LAYLLLGDYDAALEDFDRALE-LDPD--YAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173


                  .
gi 504300011 1213 N 1213
Cdd:COG4785   174 D 174
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1073-1211 2.89e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 60.36  E-value: 2.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1073 YADYEARLKHYDRAMEILNTAALPLYESNPFYRGKEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVY 1152
Cdd:COG5010    19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 504300011 1153 fYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNP 1211
Cdd:COG5010    99 -SRSGDKDEAKEYYEKALA-LSPD--NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 44-333 1.96e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 62.23  E-value: 1.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   44 ASSMPAEDNGLPSIDDLDSLDGLDFQDNSDNNTSDDIDNLQLPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPED 123
Cdd:NF033609  574 SNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSD 653

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  124 LGNDKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSA 203
Cdd:NF033609  654 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 733

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  204 DIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELP 283
Cdd:NF033609  734 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 813

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 504300011  284 EDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDD 333
Cdd:NF033609  814 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSD 863
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1005-1199 2.05e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 2.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1005 LIKIYQDNYEQvkALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYD 1084
Cdd:COG0457    16 LAYRRLGRYEE--AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1085 RAMEILNTAAlplyESNPFYrgkEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQ 1164
Cdd:COG0457    94 EALEDYDKAL----ELDPDD---AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL-EKLGRYEEALE 165

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 504300011 1165 HYQTAYDNLAPNLRSDKLLYNLSWIYYSDGEYDRA 1199
Cdd:COG0457   166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1117-1212 2.40e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.56  E-value: 2.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1117 IYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQhYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEY 1196
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL-LEQGRYDEAIA-LEKALK-LDPN--NAEALLNLAELLLELGDY 75

                          90
                  ....*....|....*.
gi 504300011 1197 DRAFEGFNALFQKNPS 1212
Cdd:COG3063    76 DEALAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1008-1242 3.23e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.64  E-value: 3.23e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1008 IYQDNYEQVKALQNHINLLKkdyIDDEVYP---KLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEAR----- 1079
Cdd:TIGR02917  474 IYLGKGDLAKAREAFEKALS---IEPDFFPaaaNLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRtgnee 550

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1080 -----------------------------LKHYDRAMEILNTAALpLYESNPFYrgkefvYNMLGQIYYNLGEYGNAVKN 1130
Cdd:TIGR02917  551 eavawlekaaelnpqeiepalalaqyylgKGQLKKALAILNEAAD-AAPDSPEA------WLMLGRAQLAAGDLNKAVSS 623

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1131 FTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAYDNLAPNLRSDKLLYNLswiYYSDGEYDRAFEGFNALFQKN 1210
Cdd:TIGR02917  624 FKKLLALQPDSALALLLLADAY-AVMKNYAKAITSLKRALELKPDNTEAQIGLAQL---LLAAKRTESAKKIAKSLQKQH 699

                          250       260       270
                   ....*....|....*....|....*....|..
gi 504300011  1211 PSNSVVSYALGNSLLHLDKANLANGFYRNALS 1242
Cdd:TIGR02917  700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1005-1138 1.45e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 1.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1005 LIKIYQDNYEQVKALQNHinLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYD 1084
Cdd:COG4783    12 QALLLAGDYDEAEALLEK--ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 504300011 1085 RAMEILNTaALPLYESNPfyrgkeFVYNMLGQIYYNLGEYGNAVKNFTEALAIN 1138
Cdd:COG4783    90 EALALLEK-ALKLDPEHP------EAYLRLARAYRALGRPDEAIAALEKALELD 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1079-1178 4.85e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.09  E-value: 4.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1079 RLKHYDRAMEILNtAALPLYESNPFyrgkefVYNMLGQIYYNLGEYGNAVKnFTEALAINSVYPDANYNLANVYfYREKD 1158
Cdd:COG3063     4 KLGDLEEAEEYYE-KALELDPDNAD------ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELL-LELGD 74

                          90       100
                  ....*....|....*....|
gi 504300011 1159 YEKAKQHYQTAYDNLAPNLR 1178
Cdd:COG3063    75 YDEALAYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1017-1172 2.52e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 2.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1017 KALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNTAalp 1096
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA--- 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504300011 1097 lYESNPFYrgkEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAYDN 1172
Cdd:COG5010    81 -LQLDPNN---PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL-LSLGQDDEAKAALQRALGT 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1114-1241 3.11e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.50  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1114 LGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSD 1193
Cdd:COG5010    25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ-LDPN--NPELYYNLALLYSRS 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 504300011 1194 GEYDRAFEGFNALFQKNPSNSVVSYALGNSLLHLDKANLANGFYRNAL 1241
Cdd:COG5010   102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1079-1172 3.45e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.99  E-value: 3.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1079 RLKHYDRAMEILNTaalpLYESNPFYRGKEFVYNMLGQIYYNLGEYGNAVKNFTEALAI---NSVYPDANYNLANVYfYR 1155
Cdd:COG1729     5 KAGDYDEAIAAFKA----FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSY-LE 79

                          90
                  ....*....|....*..
gi 504300011 1156 EKDYEKAKQHYQTAYDN 1172
Cdd:COG1729    80 LGDYDKARATLEELIKK 96
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 840-1230 5.07e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 5.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   840 KPVMANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKwyNKYARAYID--RETFSYALKKIQGALDIKPRDFETRIT 917
Cdd:TIGR02917  223 RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL--AHYLKALVDfqKKNYEDARETLQDALKSAPEYLPALLL 300

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   918 FG--YYYRKkgekelsveDYTLGEELYNDMLVYTdkkkeKETIYDERGLLMIsrartLVEPNYYDIAYNNYRDMInfFGD 995
Cdd:TIGR02917  301 AGasEYQLG---------NLEQAYQYLNQILKYA-----PNSHQARRLLASI-----QLRLGRVDEAIATLSPAL--GLD 359

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   996 GVVPRKRAMLIKIY--QDNYEQVKALQNHINLLKKDYIDdeVYPKLAKYLLDKDDfygSRILFENLLTAypNNLESIVGY 1073
Cdd:TIGR02917  360 PDDPAALSLLGEAYlaLGDFEKAAEYLAKATELDPENAA--ARTQLGISKLSQGD---PSEAIADLETA--AQLDPELGR 432

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1074 ADY-----EARLKHYDRAMeilnTAALPLYESNPfyrGKEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNL 1148
Cdd:TIGR02917  433 ADLllilsYLRSGQFDKAL----AAAKKLEKKQP---DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1149 ANvYFYREKDYEKAKQHYQTAYDNLAPNLRsdkLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGNSLL--- 1225
Cdd:TIGR02917  506 AR-IDIQEGNPDDAIQRFEKVLTIDPKNLR---AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLgkg 581


                   ....*
gi 504300011  1226 HLDKA 1230
Cdd:TIGR02917  582 QLKKA 586
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1153-1247 8.27e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.83  E-value: 8.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1153 FYREKDYEKAKQHYQTAYDNLAPNLRSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYAL---GNSLLHLDK 1229
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALlklGLSYLELGD 82

                          90
                  ....*....|....*...
gi 504300011 1230 ANLAngfyRNALSQVLSK 1247
Cdd:COG1729    83 YDKA----RATLEELIKK 96
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
838-935 9.44e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 9.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  838 IYKPVMANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRIT 917
Cdd:COG4785    67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                          90
                  ....*....|....*...
gi 504300011  918 FGYYYRKKGEKELSVEDY 935
Cdd:COG4785   147 RGIALYYLGRYELAIADL 164
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 1010-1177 1.19e-06

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 51.18  E-value: 1.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1010 QDNYEQvkALQNHINLLKKDYIDDEVYPKLAKYL-----LDKDDFYgsrilFENLLTAYPNNLESIVGYADYEARLKHYD 1084
Cdd:TIGR02521   44 QGDLEV--AKENLDKALEHDPDDYLAYLALALYYqqlgeLEKAEDS-----FRRALTLNPNNGDVLNNYGTFLCQQGKYE 116

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1085 RAMEILNTAAlplyeSNPFYRGKEFVYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAK- 1163
Cdd:TIGR02521  117 QAMQQFEQAI-----EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY-YLRGQYKDARa 190

                          170
                   ....*....|....*.
gi 504300011  1164 --QHYQTAYDNLAPNL 1177
Cdd:TIGR02521  191 ylERYQQTYNQTAESL 206
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 192-487 1.51e-06

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 52.99  E-value: 1.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  192 LPEDLDNDKVSadiDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDND 271
Cdd:NF033609  557 IPEDSDSDPGS---DSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASD 633

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  272 KVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDD 351
Cdd:NF033609  634 SDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 713

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  352 LGLPEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKIAMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYE 431
Cdd:NF033609  714 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 793

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 504300011  432 YNEDLPNIESNDDQKSNINDLELDDISDSLDDILEDEDSNLDDILSDDELDEEDKN 487
Cdd:NF033609  794 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1127-1243 3.09e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 3.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1127 AVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNAL 1206
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAY-LRLGRYDEALAAYEKALR-LDPD--NADALLDLAEALLAAGDTEEAEELLERA 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 504300011 1207 FQKNPSNSVVSYALGNSLLHLDKANLANGFYRNALSQ 1243
Cdd:COG4235    78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
TPR_12 pfam13424
Tetratricopeptide repeat;
1110-1171 3.86e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 3.86e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1110 VYNMLGQIYYNLGEYGNAVKNFTEALAINSVYPDAN--------YNLANVYFYREkDYEKAKQHYQTAYD 1171
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpltattlLNLGRLYLELG-RYEEALELLERALA 73
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1143-1243 4.76e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 4.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1143 DANYNLANVYfYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYALGN 1222
Cdd:COG4783     5 EALYALAQAL-LLAGDYDEAEALLEKALE-LDPD--NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100
                  ....*....|....*....|.
gi 504300011 1223 SLLHLDKANLANGFYRNALSQ 1243
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKL 101
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1039-1213 7.78e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.47  E-value: 7.78e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1039 LAKYLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEILNTAAlplyESNPFYrgkEFVYNMLGQIY 1118
Cdd:TIGR02917  165 LAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI----ALRPNN---IAVLLALATIL 237

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1119 YNLGEYGNAVKNFTEALAINSVYPDANYNLANVYfYREKDYEKAKQHYQTAYdNLAPNLRSDKLLynLSWIYYSDGEYDR 1198
Cdd:TIGR02917  238 IEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD-FQKKNYEDARETLQDAL-KSAPEYLPALLL--AGASEYQLGNLEQ 313

                          170
                   ....*....|....*
gi 504300011  1199 AFEGFNALFQKNPSN 1213
Cdd:TIGR02917  314 AYQYLNQILKYAPNS 328
TPR_11 pfam13414
TPR repeat;
1115-1153 8.79e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.00  E-value: 8.79e-06
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 504300011  1115 GQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYF 1153
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 849-1235 2.44e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.93  E-value: 2.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   849 NQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYRKKGEK 928
Cdd:TIGR02917  504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   929 ELSvedytlgEELYNDMLvytDKKKEKETIYDergLLmisrARTLVEPNYYDIAYNNYRDMINFFGDGVVPRKRamLIKI 1008
Cdd:TIGR02917  584 KKA-------LAILNEAA---DAAPDSPEAWL---ML----GRAQLAAGDLNKAVSSFKKLLALQPDSALALLL--LADA 644

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1009 YQDNYEQVKALQNHINLLKKDYIDDEVYPKLAKYLLDKDDFYGSRILFENLLTAYPNN--LESIVG--YA---DYEARLK 1081
Cdd:TIGR02917  645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAalGFELEGdlYLrqkDYPAAIQ 724

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1082 HYDRAMEI---------LNTA---------ALPLYESNPFYRGKEFVYN-MLGQIYYNLGEYGNAVKNFTEALAINSVYP 1142
Cdd:TIGR02917  725 AYRKALKRapssqnaikLHRAllasgntaeAVKTLEAWLKTHPNDAVLRtALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  1143 DANYNLAnvYFYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYalgn 1222
Cdd:TIGR02917  805 VVLNNLA--WLYLELKDPRALEYAERALK-LAPN--IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY---- 875

                          410
                   ....*....|...
gi 504300011  1223 sllHLDKANLANG 1235
Cdd:TIGR02917  876 ---HLALALLATG 885
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 847-945 2.51e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 2.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  847 YYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYRKKG 926
Cdd:COG4783    41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                          90
                  ....*....|....*....
gi 504300011  927 EKELSVEDYTLGEELYNDM 945
Cdd:COG4783   121 RPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1152-1242 2.83e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1152 YFYREKDYEKAKQHYQTAYDnLAPNlrSDKLLYNLSWIYYSDGEYDRAFEgFNALFQKNPSNSVVSYALGNSLLHLDKAN 1231
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALE-LDPD--NADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                          90
                  ....*....|.
gi 504300011 1232 LANGFYRNALS 1242
Cdd:COG3063    77 EALAYLERALE 87
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1000-1170 3.73e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 3.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1000 RKRAMLIKIYQDNYEQVKALQNHINLLKKDYIDDEVYPKLAKYLLD-------KDDFYGSRILFENLLTAYPNNLESIVG 1072
Cdd:COG4785    33 AVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYErgvaydsLGDYDLAIADFDQALELDPDLAEAYNN 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1073 YADYEARLKHYDRAMEILNTAalplYESNPFYrgkEFVYNMLGQIYYNLGEYGNAVKNFTEALAINsvyPDANYNLANVY 1152
Cdd:COG4785   113 RGLAYLLLGDYDAALEDFDRA----LELDPDY---AYAYLNRGIALYYLGRYELAIADLEKALELD---PNDPERALWLY 182

                         170
                  ....*....|....*....
gi 504300011 1153 F-YREKDYEKAKQHYQTAY 1170
Cdd:COG4785   183 LaERKLDPEKALALLLEDW 201
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 163-331 3.88e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 48.07  E-value: 3.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  163 DKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADID 242
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  243 NLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDL 322
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202

                         170
                  ....*....|
gi 504300011  323 DNDK-VSADI 331
Cdd:PRK05901  203 DAKLtATADP 212
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 145-313 4.41e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 47.68  E-value: 4.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  145 DKVSDDVDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADID 224
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  225 NLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDL 304
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202

                         170
                  ....*....|
gi 504300011  305 DNDK-VSADI 313
Cdd:PRK05901  203 DAKLtATADP 212
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
847-935 4.81e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 4.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  847 YYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYRKKG 926
Cdd:COG0457    45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124


                  ....*....
gi 504300011  927 EKELSVEDY 935
Cdd:COG0457   125 RYDEAIEAY 133
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 181-348 6.38e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 47.30  E-value: 6.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  181 DKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADID 260
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  261 NLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDL 340
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202


                  ....*....
gi 504300011  341 DNDL-VSND 348
Cdd:PRK05901  203 DAKLtATAD 211
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 844-935 8.15e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 8.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  844 ANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYR 923
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90
                  ....*....|..
gi 504300011  924 KKGEKELSVEDY 935
Cdd:COG4783    84 KAGDYDEALALL 95
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
840-935 8.83e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 8.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  840 KPVMANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFG 919
Cdd:COG0457    72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                          90
                  ....*....|....*.
gi 504300011  920 YYYRKKGEKELSVEDY 935
Cdd:COG0457   152 IALEKLGRYEEALELL 167
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 127-295 1.33e-04

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 46.14  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  127 DKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADID 206
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  207 NLELPENLDNDKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDL 286
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202

                         170
                  ....*....|
gi 504300011  287 DNDK-VSADI 295
Cdd:PRK05901  203 DAKLtATADP 212
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
839-935 1.97e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  839 YKPVMANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITF 918
Cdd:COG0457     3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                          90
                  ....*....|....*..
gi 504300011  919 GYYYRKKGEKELSVEDY 935
Cdd:COG0457    83 GLALQALGRYEEALEDY 99
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 844-935 2.07e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 2.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  844 ANKYYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYR 923
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                          90
                  ....*....|..
gi 504300011  924 KKGEKELSVEDY 935
Cdd:COG4235    97 QQGDYAEAIAAW 108
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 847-935 3.02e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 3.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  847 YYNQGLVSISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALKKIQGALDIKPRDFETRITFGYYYRKKG 926
Cdd:COG3914   115 LFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194


                  ....*....
gi 504300011  927 EKELSVEDY 935
Cdd:COG3914   195 RLEEAIAAY 203
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
 69-487 3.22e-04

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 45.39  E-value: 3.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   69 QDNSDNNTSDDIDNLQLPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVS 148
Cdd:COG5271   285 EDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDA 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  149 DDVDNLELPEDLDNDKVSADIDNlELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDND----KVSADID 224
Cdd:COG5271   365 EDEAAGEAADESEGADTDAAADE-ADAAADDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDEstdvTSAEDDI 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  225 NLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKvSADIDNLELPEDLDNDKVSADIDDLGLPEDL 304
Cdd:COG5271   444 ATDEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDG-DEEEAEEDAEAEADSDELTAEETSADDGADT 522

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  305 DNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDK 384
Cdd:COG5271   523 DAAADPEDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADADETEESADESEEAEASED 602

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  385 ELEDKIAMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDLPNIESNDdqksniNDLELDDISDSLDDI 464
Cdd:COG5271   603 EAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEAS------ADESEEEAEDESETS 676

                         410       420
                  ....*....|....*....|...
gi 504300011  465 LEDEDSNLDDILSDDELDEEDKN 487
Cdd:COG5271   677 SEDAEEDADAAAAEASDDEEETE 699
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 1113-1172 4.66e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.01  E-value: 4.66e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504300011  1113 MLGQIYYNLGEYGNAVKNFTEALAINSVYPD---ANYNLANVYfYREKDYEKAKQHYQTAYDN 1172
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAA-LRQGRLAEAAAAYRAALRA 63
TPR COG0790
TPR repeat [General function prediction only];
1112-1209 6.85e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.99  E-value: 6.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1112 NMLGQIYYNlgeyGNAV-KNFTEAL-----AINSVYPDANYNLANVYFY---REKDYEKAKQHYQTAYDnlAPNLRSdkl 1182
Cdd:COG0790    67 YNLGLMYAE----GRGVpKDYEKALewfekAAEQGDAEAQYNLGLMYEEglgVPQDYAKALEWYEKAAE--QGDADA--- 137

                          90       100       110
                  ....*....|....*....|....*....|..
gi 504300011 1183 LYNLSWIYYsDGE-----YDRAFEgfnaLFQK 1209
Cdd:COG0790   138 QYNLGLLYL-NGEgvpkdPAKAAE----WYRK 164
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
 48-694 6.94e-04

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 44.24  E-value: 6.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   48 PAEDNGLPSIDDLDSLDGLDFQDNSDNNTSDDIDNLQLPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPEDLGND 127
Cdd:COG5271   301 PESDDDADDSTLAALEGAAEDTEIATADELAAADDEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGAD 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  128 KVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLEL--PEDLDNDKVSADI 205
Cdd:COG5271   381 TDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEEEADEDASAGETEDESTDVTSAEDDIATdeEADSLADEEEEAE 460

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  206 DNLELPENLDNDKVSADIDNLEFPEDLDNDKvSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPED 285
Cdd:COG5271   461 AELDTEEDTESAEEDADGDEATDEDDASDDG-DEEEAEEDAEAEADSDELTAEETSADDGADTDAAADPEDSDEDALEDE 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  286 LDNDKVSADIDDLGLPEDLDNDKVSADIDDL------GLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHD 359
Cdd:COG5271   540 TEGEENAPGSDQDADETDEPEATAEEDEPDEaeaeteDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADA 619

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  360 LGLPEDLDDDKVSANIDDLELPEDKELEDKIAMDINNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDLPNI 439
Cdd:COG5271   620 DGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEAEDESETSSEDAEEDADAAAAEASDDEEETE 699

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  440 ESNDDQKSNINDLELDDISDSLDDILEDEDSNLDDILSDDELDEEDKNEVKEEAKAEEPQDDIDLDDLSLDSIMDEDKEE 519
Cdd:COG5271   700 EADEDAETASEEADAEEADTEADGTAEEAEEAAEEAESADEEAASLPDEADAEEEAEEAEEAEEDDADGLEEALEEEKAD 779

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  520 EPKDEVDEVKEETKTEEPQDDIDLDDLSLDSIMDEDKEGEPKDEVNEVKEEAKAEEPQDDIDLDDLSLDSIMDEDKKEEP 599
Cdd:COG5271   780 AEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEAEADEEEDLDGEDEETADEALEDIEAGIAEDDEEDDDAAAAKDVD 859

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  600 KDEVNEVKEETKTEEPHDNMDLDDLSLDSILDEDKEEEPKDEVAEVKEETKAEEPHDDINLDDLSLDDAIEEYEQSPKDD 679
Cdd:COG5271   860 ADLDLDADLAADEHEAEEAQEAETDADADADAGEADSSGESSAAAEDDDAAEDADSDDGANDEDDDDDAEEERKDAEEDE 939

                         650
                  ....*....|....*
gi 504300011  680 LDLDDVIEDIDDKNE 694
Cdd:COG5271   940 LGAAEDDLDALALDE 954
COG3899 COG3899
Predicted ATPase [General function prediction only];
1074-1255 7.29e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.08  E-value: 7.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1074 ADYEARLKHYDRAMEILNTAALPLYESNpfyrgkefVYNMLGQIYYNLGEYGNAVKNFTEALAINSVY----------PD 1143
Cdd:COG3899   719 GAYAEALRYLERALELLPPDPEEEYRLA--------LLLELAEALYLAGRFEEAEALLERALAARALAalaalrhgnpPA 790

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1144 ANYNLANVYFYREKDYEKAKQHYQTAYDNL----APNLRSdKLLYNLSWIYYSDGEYDRAFEGFNALFQKNPSNSVVSYA 1219
Cdd:COG3899   791 SARAYANLGLLLLGDYEEAYEFGELALALAerlgDRRLEA-RALFNLGFILHWLGPLREALELLREALEAGLETGDAALA 869

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 504300011 1220 LGNSLLHLDKANLANGFYRNALSQVLSKRDRLGRLE 1255
Cdd:COG3899   870 LLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALA 905
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 253-407 7.53e-04

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 43.83  E-value: 7.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  253 DKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADID 332
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504300011  333 DLGLPEDLDNDLVSNDLDDLglpEDHDLGLPEDLDDDKVSANIDDLELPEDKELEDKiAMDINNDNSNKNDIHSE 407
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDL---DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK-ELEKLSDDDDFVWDEDD 193
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1075-1176 8.04e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.53  E-value: 8.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1075 DYEARLKHYDRAMEIlntaalplyESNPFYRGKeFVYNmLGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFY 1154
Cdd:CHL00033   50 EYAEALQNYYEAMRL---------EIDPYDRSY-ILYN-IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118

                          90       100       110
                  ....*....|....*....|....*....|....
gi 504300011 1155 R------EKDYEKAKQHYQTAYD------NLAPN 1176
Cdd:CHL00033  119 RgeqaieQGDSEIAEAWFDQAAEywkqaiALAPG 152
TPR_12 pfam13424
Tetratricopeptide repeat;
1144-1201 1.24e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.91  E-value: 1.24e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504300011  1144 ANYNLANVYfYREKDYEKAKQHYQTAYDNLAPNLRSDKL-----LYNLSWIYYSDGEYDRAFE 1201
Cdd:pfam13424    5 ALNNLAAVL-RRLGRYDEALELLEKALEIARRLLGPDHPltattLLNLGRLYLELGRYEEALE 66
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
855-935 1.27e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  855 ISKGAYDDAERNFSEGERLKPKQIKWYNKYARAYIDRETFSYALkKIQGALDIKPRDFETRITFGYYYRKKGEKELSVED 934
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81


                  .
gi 504300011  935 Y 935
Cdd:COG3063    82 L 82
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 218-359 1.30e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 43.06  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  218 KVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADIDD 297
Cdd:PRK05901   62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDD 141

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504300011  298 LGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHD 359
Cdd:PRK05901  142 LDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKD 203
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 116-241 1.31e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 43.06  E-value: 1.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  116 DDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPED 195
Cdd:PRK05901   86 AAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDV 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 504300011  196 LDNDKVSADIDNLELPEnldnDKVSADIDNLEFPEDLDNDKV-----SADI 241
Cdd:PRK05901  166 DDEDEEKKEAKELEKLS----DDDDFVWDEDDSEALRQARKDakltaTADP 212
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 96-223 1.37e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 43.06  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   96 DPDDLGLPEDLDNDKLSDDIDDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVSDDVDNLELPEDLDNDKVSADIDNLELP 175
Cdd:PRK05901   84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 504300011  176 EDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDK-VSADI 223
Cdd:PRK05901  164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLtATADP 212
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 217-380 1.49e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 42.67  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  217 DKVSADIDNLEFPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLDLPEDLDNDKVSADIDNLELPEDLDNDKVSADID 296
Cdd:PRK05901   43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  297 DLGLPEDLDNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLVSNDLDDLGLPEDHDLGLPEDLDDDKVSANID 376
Cdd:PRK05901  123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202


                  ....
gi 504300011  377 DLEL 380
Cdd:PRK05901  203 DAKL 206
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 1110-1138 2.86e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.73  E-value: 2.86e-03
                           10        20
                   ....*....|....*....|....*....
gi 504300011  1110 VYNMLGQIYYNLGEYGNAVKNFTEALAIN 1138
Cdd:pfam07719    3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1042-1138 3.45e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1042 YLLDKDDFYGSRILFENLLTAYPNNLESIVGYADYEARLKHYDRAMEIlnTAALPLYESNPFyrgkefVYNMLGQIYYNL 1121
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL--EKALKLDPNNAE------ALLNLAELLLEL 72

                          90
                  ....*....|....*..
gi 504300011 1122 GEYGNAVKNFTEALAIN 1138
Cdd:COG3063    73 GDYDEALAYLERALELD 89
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1075-1176 3.61e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1075 DYEARLKHYDRAMEIlntaalplyESNPFYRGkEFVYNMlGQIYYNLGEYGNAVKNFTEALAINSVYPDANYNLANVYFY 1154
Cdd:PRK02603   50 EYAEALENYEEALKL---------EEDPNDRS-YILYNM-GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK 118

                          90       100       110
                  ....*....|....*....|....*....|....
gi 504300011 1155 R------EKDYEKAKQHYQTAYD------NLAPN 1176
Cdd:PRK02603  119 RgekaeeAGDQDEAEALFDKAAEywkqaiRLAPN 152
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 1057-1169 3.63e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.05  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011 1057 ENLLTAYPNNLESivgyaDYEARLKHydraMEilntAALPLYESNPFYrgkefvYNMLGQIYYNLGEYGNAVKNFTEALA 1136
Cdd:COG3071   226 PRLVRLYGRLQGG-----DPAKQLKR----AE----KWLKKHPNDPDL------LLALGRLCLRNQLWGKAREYLEAALA 286

                          90       100       110
                  ....*....|....*....|....*....|...
gi 504300011 1137 INSVyPDANYNLANVYfYREKDYEKAKQHYQTA 1169
Cdd:COG3071   287 LRPS-AEAYAELARLL-EQLGDPEEAAEHYRKA 317
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 1110-1138 4.89e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 4.89e-03
                            10        20
                    ....*....|....*....|....*....
gi 504300011   1110 VYNMLGQIYYNLGEYGNAVKNFTEALAIN 1138
Cdd:smart00028    3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
 69-565 5.20e-03

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 41.54  E-value: 5.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011   69 QDNSDNNTSDDIDNLQLPEDFDNPLSDDPDDLGLPEDLDNDKLSDDIDDLGLPEDLGNDKVSDDVDDLGLPEDLDNDKVS 148
Cdd:COG5271   511 AEETSADDGADTDAAADPEDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAEAETEDATENADADETEES 590

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  149 DDVDNlELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPEDLDNDKVSADIDNLELPENLDNDKVSADIDNLEF 228
Cdd:COG5271   591 ADESE-EAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASADESEEEA 669

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  229 PEDLDNDKVSADIDNLELPEDLDND---KVSADIDNLDLPEDLDNDKVSADIDNLEL-PEDLDNDKVSADIDDLGLPEDL 304
Cdd:COG5271   670 EDESETSSEDAEEDADAAAAEASDDeeeTEEADEDAETASEEADAEEADTEADGTAEeAEEAAEEAESADEEAASLPDEA 749

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  305 DNDKVSADIDDLGLPEDLDNDKVSADIDDLGLPEDLDNDLvSNDLDDLGLPEDHDLGLPEDLDDDKVSANIDDLELPEDK 384
Cdd:COG5271   750 DAEEEAEEAEEAEEDDADGLEEALEEEKADAEEAATDEEA-EAAAEEKEKVADEDQDTDEDALLDEAEADEEEDLDGEDE 828

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  385 ELEDKIAMDI---NNDNSNKNDIHSEKLPVLDDLPLPDTLPNIDEGREYEYNEDLPNIESNDDQKSNINDLELDDISDSL 461
Cdd:COG5271   829 ETADEALEDIeagIAEDDEEDDDAAAAKDVDADLDLDADLAADEHEAEEAQEAETDADADADAGEADSSGESSAAAEDDD 908

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504300011  462 DDILEDEDSNLDDILSDDELDEEDKNEVKEEAKAEEPQDDIDLDDLSLDSIMDEDKEEEPKDEVDEVKEETKTEEPQDDI 541
Cdd:COG5271   909 AAEDADSDDGANDEDDDDDAEEERKDAEEDELGAAEDDLDALALDEAGDEESDDAAADDAGDDSLADDDEALADAADDAE 988

                         490       500
                  ....*....|....*....|....
gi 504300011  542 DLDDLSLDSIMDEDKEGEPKDEVN 565
Cdd:COG5271   989 ADDSELDASESTGEAEGDEDDDEL 1012
TPR_1 pfam00515
Tetratricopeptide repeat;
1110-1138 5.65e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 5.65e-03
                           10        20
                   ....*....|....*....|....*....
gi 504300011  1110 VYNMLGQIYYNLGEYGNAVKNFTEALAIN 1138
Cdd:pfam00515    3 ALYNLGNAYFKLGKYDEALEYYEKALELN 31
TPR_12 pfam13424
Tetratricopeptide repeat;
1075-1137 8.17e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 8.17e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504300011  1075 DYEARLKHYDRAMEILNTAalplyeSNPFYRGKEFVYNMLGQIYYNLGEYGNAVKNFTEALAI 1137
Cdd:pfam13424   18 RYDEALELLEKALEIARRL------LGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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