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Conserved domains on  [gi|504762637|ref|WP_014949739|]
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MULTISPECIES: flavodoxin FldA [Alteromonas]

Protein Classification

flavodoxin( domain architecture ID 10013166)

flavodoxin is a low-potential electron donor to a number of redox enzymes; such as Escherichia coli flavodoxin 1 (FldA) that is involved in the reactivation of inactive cob(II)alamin in methionine synthase, and Azotobacter chroococcum flavodoxin B (NifF) that is the electron donor to nitrogenase

CATH:  3.40.50.360
Gene Ontology:  GO:0010181|GO:0009055
PubMed:  16465441
SCOP:  3001217

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 5.87e-109

flavodoxin FldA; Validated


:

Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 307.91  E-value: 5.87e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDFND 80
Cdd:PRK09267   1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  81 KLVAIFGCGDQEDYAEYFLDAMGMVRDIVEAKGAILVGQWSTEGYDFEASKGMaDDNHFVGLGIDEDRQPELTDSRVKAW 160
Cdd:PRK09267  81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDERIEAW 159

                        170
                 ....*....|
gi 504762637 161 CKQIHDELCL 170
Cdd:PRK09267 160 VKQIKPEFGL 169
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 5.87e-109

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 307.91  E-value: 5.87e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDFND 80
Cdd:PRK09267   1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  81 KLVAIFGCGDQEDYAEYFLDAMGMVRDIVEAKGAILVGQWSTEGYDFEASKGMaDDNHFVGLGIDEDRQPELTDSRVKAW 160
Cdd:PRK09267  81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDERIEAW 159

                        170
                 ....*....|
gi 504762637 161 CKQIHDELCL 170
Cdd:PRK09267 160 VKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-168 2.17e-83

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 243.04  E-value: 2.17e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637    3 SVGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDFNDKL 82
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   83 VAIFGCGDQEDYAEYFLDAMGMVRDIVEAKGAILVGQWSTEGYDFEASKGMADDNHFVGLGIDEDRQPELTDSRVKAWCK 162
Cdd:TIGR01752  81 VALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVE 160


                  ....*.
gi 504762637  163 QIHDEL 168
Cdd:TIGR01752 161 QIKPEF 166
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-164 1.59e-47

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 151.21  E-value: 1.59e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   4 VGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWyYGEAQCDWDDFFPELEQiDFNDKLV 83
Cdd:COG0716    1 ILIVYGSTTGNTEKVAEAIAEALGAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLSGKKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  84 AIFGCGDQEDYAeyflDAMGMVRDIVEAKGAILVgqwstEGYDFEaskgmaddnhfvglgIDEDRQPELTDSRVKAWCKQ 163
Cdd:COG0716   79 ALFGTGDSSGYG----DALGELKELLEEKGAKVV-----GGYDFE---------------GSKAPDAEDTEERAEEWLKQ 134


                 .
gi 504762637 164 I 164
Cdd:COG0716  135 L 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-160 1.48e-24

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 92.82  E-value: 1.48e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637    6 LFFGSDTGNTEHVAKMIQKELGKQLIDVKDI----AKSSKEDIAEFDLLIFGIPTWYYGEAQ------CDWDDFFPELEQ 75
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVdlddVDETLSEIEEEDLLLVVVSTWGEGEPPdnakpfVDWLLLFGTLED 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   76 IDFNDKLVAIFGCGDQEDYaeYFLDAMGMVRDIVEAKGAILVgqwstegydfeaskgmaddnhFVGLGIDEDRQPELTDS 155
Cdd:pfam00258  81 GDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRV---------------------GPLGEGDEDPQEDGLEE 137


                  ....*
gi 504762637  156 RVKAW 160
Cdd:pfam00258 138 AFEAW 142
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 6-121 1.87e-09

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 54.87  E-value: 1.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   6 LFFgSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQ--CDWddffpeLEQIDF--NDK 81
Cdd:NF038196   2 FYF-SGTGNSLYVAKRIAEELGDELISISKAIKEGDFKLKEDEPIGFVFPVYAWGLPRivEDF------IKKLKLkgNKY 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 504762637  82 LVAIFGCGDQEDYaeyfldAMGMVRDIVEAKGAILVGQWS 121
Cdd:NF038196  75 IFAVATCGGSIGN------ALAQLKKLLKKKGLKLSGGFS 108
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 5.87e-109

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 307.91  E-value: 5.87e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDFND 80
Cdd:PRK09267   1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  81 KLVAIFGCGDQEDYAEYFLDAMGMVRDIVEAKGAILVGQWSTEGYDFEASKGMaDDNHFVGLGIDEDRQPELTDSRVKAW 160
Cdd:PRK09267  81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDERIEAW 159

                        170
                 ....*....|
gi 504762637 161 CKQIHDELCL 170
Cdd:PRK09267 160 VKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-168 2.17e-83

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 243.04  E-value: 2.17e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637    3 SVGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDFNDKL 82
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   83 VAIFGCGDQEDYAEYFLDAMGMVRDIVEAKGAILVGQWSTEGYDFEASKGMADDNHFVGLGIDEDRQPELTDSRVKAWCK 162
Cdd:TIGR01752  81 VALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVE 160


                  ....*.
gi 504762637  163 QIHDEL 168
Cdd:TIGR01752 161 QIKPEF 166
PRK12359 PRK12359
flavodoxin FldB; Provisional
 4-168 5.42e-62

flavodoxin FldB; Provisional


Pssm-ID: 183471 [Multi-domain]  Cd Length: 172  Bit Score: 189.01  E-value: 5.42e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   4 VGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDFNDKLV 83
Cdd:PRK12359   3 IGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  84 AIFGCGDQEDYAEYFLDAMGMVRDIVEAKGAILVGQWSTEGYDFEASKGMADDN-HFVGLGIDEDRQPELTDSRVKAWCK 162
Cdd:PRK12359  83 ALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGqLFVGLALDEVNQYDLSDERIQQWCE 162


                 ....*.
gi 504762637 163 QIHDEL 168
Cdd:PRK12359 163 QILLEM 168
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-164 1.59e-47

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 151.21  E-value: 1.59e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   4 VGLFFGSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWyYGEAQCDWDDFFPELEQiDFNDKLV 83
Cdd:COG0716    1 ILIVYGSTTGNTEKVAEAIAEALGAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLSGKKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  84 AIFGCGDQEDYAeyflDAMGMVRDIVEAKGAILVgqwstEGYDFEaskgmaddnhfvglgIDEDRQPELTDSRVKAWCKQ 163
Cdd:COG0716   79 ALFGTGDSSGYG----DALGELKELLEEKGAKVV-----GGYDFE---------------GSKAPDAEDTEERAEEWLKQ 134


                 .
gi 504762637 164 I 164
Cdd:COG0716  135 L 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-160 1.48e-24

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 92.82  E-value: 1.48e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637    6 LFFGSDTGNTEHVAKMIQKELGKQLIDVKDI----AKSSKEDIAEFDLLIFGIPTWYYGEAQ------CDWDDFFPELEQ 75
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVdlddVDETLSEIEEEDLLLVVVSTWGEGEPPdnakpfVDWLLLFGTLED 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   76 IDFNDKLVAIFGCGDQEDYaeYFLDAMGMVRDIVEAKGAILVgqwstegydfeaskgmaddnhFVGLGIDEDRQPELTDS 155
Cdd:pfam00258  81 GDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRV---------------------GPLGEGDEDPQEDGLEE 137


                  ....*
gi 504762637  156 RVKAW 160
Cdd:pfam00258 138 AFEAW 142
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
 8-118 3.84e-17

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 73.53  E-value: 3.84e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637    8 FGSDTGNTEHVAKMIQKELGKQLIDV--KDIAKSSKEDIAEFDLLIFGIPTWYYGE-AQCDWDDFFPELEQIDFNDKLVA 84
Cdd:TIGR01753   5 YASMTGNTEEMANIIAEGLKEAGAEVdlLEVADADAEDLLSYDAVLLGCSTWGDEDlEQDDFEPFFEELEDIDLGGKKVA 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 504762637   85 IFGCGDQEDyaeYFLDAMGMVRDIVEAKGAILVG 118
Cdd:TIGR01753  85 LFGSGDWGY---EFCEAVDDWEERLKEAGATIIA 115
PRK06703 PRK06703
flavodoxin; Provisional
 1-117 2.14e-13

flavodoxin; Provisional


Pssm-ID: 235854 [Multi-domain]  Cd Length: 151  Bit Score: 64.01  E-value: 2.14e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQKEL-GKQL-IDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDF 78
Cdd:PRK06703   1 MAKILIAYASMSGNTEDIADLIKVSLdAFDHeVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 504762637  79 NDKLVAIFGCGdqeDYA-EYFLDAMGMVRDIVEAKGAILV 117
Cdd:PRK06703  81 SGKKVAVFGSG---DTAyPLFCEAVTIFEERLVERGAELV 117
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 6-121 1.87e-09

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 54.87  E-value: 1.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   6 LFFgSDTGNTEHVAKMIQKELGKQLIDVKDIAKSSKEDIAEFDLLIFGIPTWYYGEAQ--CDWddffpeLEQIDF--NDK 81
Cdd:NF038196   2 FYF-SGTGNSLYVAKRIAEELGDELISISKAIKEGDFKLKEDEPIGFVFPVYAWGLPRivEDF------IKKLKLkgNKY 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 504762637  82 LVAIFGCGDQEDYaeyfldAMGMVRDIVEAKGAILVGQWS 121
Cdd:NF038196  75 IFAVATCGGSIGN------ALAQLKKLLKKKGLKLSGGFS 108
PRK06756 PRK06756
flavodoxin; Provisional
 1-90 1.04e-08

flavodoxin; Provisional


Pssm-ID: 168663 [Multi-domain]  Cd Length: 148  Bit Score: 51.42  E-value: 1.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQ---KELGKQlIDVKDIAKSSKEDIAE-FDLLIFGIPTWYYGEAQCDWDDFFPELEQI 76
Cdd:PRK06756   1 MSKLVMIFASMSGNTEEMADHIAgviRETENE-IEVIDIMDSPEASILEqYDGIILGAYTWGDGDLPDDFLDFYDAMDSI 79

                         90
                 ....*....|....
gi 504762637  77 DFNDKLVAIFGCGD 90
Cdd:PRK06756  80 DLTGKKAAVFGSCD 93
PRK06242 PRK06242
flavodoxin; Provisional
 13-127 2.02e-08

flavodoxin; Provisional


Pssm-ID: 180484 [Multi-domain]  Cd Length: 150  Bit Score: 50.68  E-value: 2.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  13 GNTEHVAKMIQKELGKQLIDVKDIaksSKEDIAEFDLLIF--GIptwYYGEAQCDWDDFFPELEQIDfNDKLVAIFGCGD 90
Cdd:PRK06242  13 GNTEKIAKAIAEVLDAEVIDPGDV---NPEDLSEYDLIGFgsGI---YFGKFHKSLLKLIEKLPPVS-GKKAFIFSTSGL 85

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 504762637  91 QedyaeyFLDAMGMVRDIVEAKGAILVGQWSTEGYDF 127
Cdd:PRK06242  86 P------FLKYHKALKKKLKEKGFEIVGEFSCKGFDT 116
NorV COG0426
Flavorubredoxin [Energy production and conversion];
4-114 8.21e-08

Flavorubredoxin [Energy production and conversion];


Pssm-ID: 440195 [Multi-domain]  Cd Length: 390  Bit Score: 50.60  E-value: 8.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   4 VGLFFGSDTGNTEHVAKMIQKELGKQLIDVK--DIAKSSKEDIAE----FDLLIFGIPTwYYGEAQCDWDDFFPELEQID 77
Cdd:COG0426  249 VVIVYASMYGNTEKMAEAIAEGLTEEGVKVKlyDLEKTDPSEIITeifdAKGIVIGSPT-YNGGAFPPIADLLGYLKGLA 327

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 504762637  78 FNDKLVAIFGC----GDQEDYAEYFLDAMGM--VRDIVEAKGA 114
Cdd:COG0426  328 PKNKLAGAFGSygwsGEAVKLLEEKLEDAGFevVFEPLRVKFK 370
PRK09271 PRK09271
flavodoxin; Provisional
 6-101 8.82e-07

flavodoxin; Provisional


Pssm-ID: 181744  Cd Length: 160  Bit Score: 46.34  E-value: 8.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   6 LFFGSDTGNTEHVAKMIQ---KELGKQL----IDVKDIAKSSKeDIAEFDLLIFGIPTWYYGEAQCDWDDFFPELEQIDF 78
Cdd:PRK09271   5 LAYASLSGNTREVAREIEercEEAGHEVdwveTDVQTLAEYPL-DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIG 83

                         90       100
                 ....*....|....*....|...
gi 504762637  79 NDKLVAIFGCGDQEDYAEYFLDA 101
Cdd:PRK09271  84 KPPNVAVFGTGETQWGEEYYCGA 106
WrbA COG0655
Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and ...
 10-105 6.27e-05

Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and conversion];


Pssm-ID: 440420 [Multi-domain]  Cd Length: 181  Bit Score: 41.45  E-value: 6.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637  10 SDTGNTEHVAKMIQKELGKQLIDV------------------------KDIAKSSKEDIAEFDLLIFGIPTWYY---GEA 62
Cdd:COG0655   10 RKNGNTAALAEAVAEGAEEAGAEVelirladldikpcigcggtgkcviKDDMNAIYEKLLEADGIIFGSPTYFGnmsAQL 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 504762637  63 QCDWDDFFPELEQID-FNDKLVAIF---GCGDQE---DYAEYFLDAMGMV 105
Cdd:COG0655   90 KAFIDRLYALWAKGKlLKGKVGAVFttgGHGGAEatlLSLNTFLLHHGMI 139
PRK05568 PRK05568
flavodoxin; Provisional
 1-87 3.23e-04

flavodoxin; Provisional


Pssm-ID: 235508 [Multi-domain]  Cd Length: 142  Bit Score: 39.02  E-value: 3.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQKELGKQLIDVK--DIAKSSKEDIAEFDLLIFGIPTwyYGEAQCDWDDFFPELEQI-- 76
Cdd:PRK05568   1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKllNVSEASVDDVKGADVVALGSPA--MGDEVLEEGEMEPFVESIss 78

                         90
                 ....*....|.
gi 504762637  77 DFNDKLVAIFG 87
Cdd:PRK05568  79 LVKGKKLVLFG 89
PRK05569 PRK05569
flavodoxin; Provisional
 1-102 4.13e-04

flavodoxin; Provisional


Pssm-ID: 135442 [Multi-domain]  Cd Length: 141  Bit Score: 38.66  E-value: 4.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQ---KELGKQlIDVKDIAKSSKEDIAEFDLLIFGIPTwyYGEAQCDWDDFFPELEQID 77
Cdd:PRK05569   1 MKKVSIIYWSCGGNVEVLANTIAdgaKEAGAE-VTIKHVADAKVEDVLEADAVAFGSPS--MDNNNIEQEEMAPFLDQFK 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 504762637  78 F---NDKLVAIFGC--GDQEDYAEYFLDAM 102
Cdd:PRK05569  78 LtpnENKKCILFGSygWDNGEFMKLWKDRM 107
CysJ COG0369
Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases ...
 8-97 1.26e-03

Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases [Nucleotide transport and metabolism, Inorganic ion transport and metabolism]; Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440138 [Multi-domain]  Cd Length: 561  Bit Score: 38.59  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504762637   8 FGSDTGNTEHVAKMIQKELGKQLIDVK--DIAKSSKEDIAEFDLLIFGIPTWYYGEAQCDWDDFF--------PELEQID 77
Cdd:COG0369   33 YGSQTGNAEGLAEQLAERAKAAGLAVTlaSLDDYKPKDLAKEGLLLIVTSTYGEGEPPDNARAFYeflhskkaPKLDGLR 112

                         90       100
                 ....*....|....*....|
gi 504762637  78 FndklvAIFGCGDQeDYAEY 97
Cdd:COG0369  113 Y-----AVLGLGDS-SYETF 126
PRK08105 PRK08105
flavodoxin; Provisional
 1-34 4.93e-03

flavodoxin; Provisional


Pssm-ID: 181230 [Multi-domain]  Cd Length: 149  Bit Score: 35.63  E-value: 4.93e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 504762637   1 MASVGLFFGSDTGNTEHVAKMIQKELGKQLIDVK 34
Cdd:PRK08105   1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVT 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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