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Conserved domains on  [gi|505462740|ref|WP_015649676|]
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MULTISPECIES: helix-turn-helix domain-containing protein [Pseudomonas]

Protein Classification

transcriptional regulator( domain architecture ID 10007349)

helix-turn-helix-type transcriptional regulator, similar Haemophilus influenzae mu-like prophage FluMu DNA-binding protein Ner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SfsB COG3423
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
14-73 2.53e-18

Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];


:

Pssm-ID: 442649 [Multi-domain]  Cd Length: 69  Bit Score: 72.56  E-value: 2.53e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 505462740  14 WEWIKYQLRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERW 73
Cdd:COG3423    9 PADIKAALRKRGTSLAALAREAGLSSSTLSNALTRPWPKGERAIAEALGVPPEEIWPSRY 68
 
Name Accession Description Interval E-value
SfsB COG3423
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
14-73 2.53e-18

Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];


Pssm-ID: 442649 [Multi-domain]  Cd Length: 69  Bit Score: 72.56  E-value: 2.53e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 505462740  14 WEWIKYQLRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERW 73
Cdd:COG3423    9 PADIKAALRKRGTSLAALAREAGLSSSTLSNALTRPWPKGERAIAEALGVPPEEIWPSRY 68
HTH_35 pfam13693
Winged helix-turn-helix DNA-binding;
17-79 1.62e-15

Winged helix-turn-helix DNA-binding;


Pssm-ID: 433408  Cd Length: 70  Bit Score: 65.72  E-value: 1.62e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505462740   17 IKYQLRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERWLDDENP 79
Cdd:pfam13693   7 IKAALRKRGTTLAALSRSAGLSSSTLSNALTRPWPKGERIIAEALGVPPEEIWPSRYFDDTGK 69
PRK10344 PRK10344
DNA-binding transcriptional regulator SfsB;
21-75 5.10e-08

DNA-binding transcriptional regulator SfsB;


Pssm-ID: 182394  Cd Length: 92  Bit Score: 46.88  E-value: 5.10e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 505462740  21 LRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERWLD 75
Cdd:PRK10344  17 LRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71
 
Name Accession Description Interval E-value
SfsB COG3423
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
14-73 2.53e-18

Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];


Pssm-ID: 442649 [Multi-domain]  Cd Length: 69  Bit Score: 72.56  E-value: 2.53e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 505462740  14 WEWIKYQLRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERW 73
Cdd:COG3423    9 PADIKAALRKRGTSLAALAREAGLSSSTLSNALTRPWPKGERAIAEALGVPPEEIWPSRY 68
HTH_35 pfam13693
Winged helix-turn-helix DNA-binding;
17-79 1.62e-15

Winged helix-turn-helix DNA-binding;


Pssm-ID: 433408  Cd Length: 70  Bit Score: 65.72  E-value: 1.62e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505462740   17 IKYQLRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERWLDDENP 79
Cdd:pfam13693   7 IKAALRKRGTTLAALSRSAGLSSSTLSNALTRPWPKGERIIAEALGVPPEEIWPSRYFDDTGK 69
PRK10344 PRK10344
DNA-binding transcriptional regulator SfsB;
21-75 5.10e-08

DNA-binding transcriptional regulator SfsB;


Pssm-ID: 182394  Cd Length: 92  Bit Score: 46.88  E-value: 5.10e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 505462740  21 LRARGSSLAEVARSLDVSSPAVKNAKLNPYPRVERAIAAVLDLSPLVLWPERWLD 75
Cdd:PRK10344  17 LRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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