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Conserved domains on  [gi|506525256|ref|WP_015992339|]
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HK97-gp10 family putative phage morphogenesis protein [Sinorhizobium meliloti]

Protein Classification

HK97 gp10 family phage protein( domain architecture ID 10522339)

HK97 gp10 family phage protein similar to Bacillus subtilis phage-like element PBSX protein XkdI

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HK97-gp10_like pfam04883
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 6-94 6.72e-08

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


:

Pssm-ID: 428172  Cd Length: 80  Bit Score: 46.94  E-value: 6.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506525256    6 RELNKAVAAMPKRVENAARKAMEKGASELVEMMRRLVPVD-QGDLRNSiaWKWGNAPKGavvlaesqEDSRGLKITVYAT 84
Cdd:pfam04883   1 DKLIKKLEKLSKVAEKAAKKALKAAAAEVADEAKKNAPVDtTGKLRDS--IKVGVNLVK--------EKGGELVVEVGSN 70

                          90
                  ....*....|
gi 506525256   85 DYKARWIEFG 94
Cdd:pfam04883  71 AEYAHLVEFG 80
 
Name Accession Description Interval E-value
HK97-gp10_like pfam04883
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 6-94 6.72e-08

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


Pssm-ID: 428172  Cd Length: 80  Bit Score: 46.94  E-value: 6.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506525256    6 RELNKAVAAMPKRVENAARKAMEKGASELVEMMRRLVPVD-QGDLRNSiaWKWGNAPKGavvlaesqEDSRGLKITVYAT 84
Cdd:pfam04883   1 DKLIKKLEKLSKVAEKAAKKALKAAAAEVADEAKKNAPVDtTGKLRDS--IKVGVNLVK--------EKGGELVVEVGSN 70

                          90
                  ....*....|
gi 506525256   85 DYKARWIEFG 94
Cdd:pfam04883  71 AEYAHLVEFG 80
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 2-127 2.22e-06

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 43.56  E-value: 2.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506525256    2 VKGVRELNKAVAAMPKRVE-NAARKAMEKGASELVEMMRRLVPVDQGDLRnsiawkwgnapkGAVVLAESQEDSRGLK-- 78
Cdd:TIGR01725   1 FTGLDELLQKLEKLGKKVDkEKVRKALKAGANVIRAKLKSNAPVSKGKKH------------GSLRDSIVKQKDNGVLsv 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 506525256   79 -ITVYATDYKARWIEFGTVKMGAQPFFFPSYRSLRKRIQSRIKREMKKAI 127
Cdd:TIGR01725  69 tVGPGKTAWYARFLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALI 118
 
Name Accession Description Interval E-value
HK97-gp10_like pfam04883
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 6-94 6.72e-08

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


Pssm-ID: 428172  Cd Length: 80  Bit Score: 46.94  E-value: 6.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506525256    6 RELNKAVAAMPKRVENAARKAMEKGASELVEMMRRLVPVD-QGDLRNSiaWKWGNAPKGavvlaesqEDSRGLKITVYAT 84
Cdd:pfam04883   1 DKLIKKLEKLSKVAEKAAKKALKAAAAEVADEAKKNAPVDtTGKLRDS--IKVGVNLVK--------EKGGELVVEVGSN 70

                          90
                  ....*....|
gi 506525256   85 DYKARWIEFG 94
Cdd:pfam04883  71 AEYAHLVEFG 80
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 2-127 2.22e-06

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 43.56  E-value: 2.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506525256    2 VKGVRELNKAVAAMPKRVE-NAARKAMEKGASELVEMMRRLVPVDQGDLRnsiawkwgnapkGAVVLAESQEDSRGLK-- 78
Cdd:TIGR01725   1 FTGLDELLQKLEKLGKKVDkEKVRKALKAGANVIRAKLKSNAPVSKGKKH------------GSLRDSIVKQKDNGVLsv 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 506525256   79 -ITVYATDYKARWIEFGTVKMGAQPFFFPSYRSLRKRIQSRIKREMKKAI 127
Cdd:TIGR01725  69 tVGPGKTAWYARFLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALI 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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