NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|526880382|ref|WP_020862642|]
View 

DxFTY motif-containing membrane protein [Mycoplasma mycoides]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YdbT super family cl28701
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 62-125 3.27e-03

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


The actual alignment was detected with superfamily member COG3428:

Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 37.76  E-value: 3.27e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 526880382  62 LTYLYLFLICLAYLIIVflinLLLVLFKVIKSDSFTYSFGLAFVGILIILTGNLFYYWNTTLVI 125
Cdd:COG3428   11 LSILVRLLKALALLLPV----LLLLLAGVGAGGGLLWVLLIALVLLLLLLLVSYLRWRTTRYRI 70
 
Name Accession Description Interval E-value
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 62-125 3.27e-03

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 37.76  E-value: 3.27e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 526880382  62 LTYLYLFLICLAYLIIVflinLLLVLFKVIKSDSFTYSFGLAFVGILIILTGNLFYYWNTTLVI 125
Cdd:COG3428   11 LSILVRLLKALALLLPV----LLLLLAGVGAGGGLLWVLLIALVLLLLLLLVSYLRWRTTRYRI 70
 
Name Accession Description Interval E-value
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 62-125 3.27e-03

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 37.76  E-value: 3.27e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 526880382  62 LTYLYLFLICLAYLIIVflinLLLVLFKVIKSDSFTYSFGLAFVGILIILTGNLFYYWNTTLVI 125
Cdd:COG3428   11 LSILVRLLKALALLLPV----LLLLLAGVGAGGGLLWVLLIALVLLLLLLLVSYLRWRTTRYRI 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH