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Conserved domains on  [gi|545062089|ref|WP_021435034|]
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MULTISPECIES: single-stranded DNA-binding protein [Bacillota]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-116 1.05e-34

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 116.09  E-value: 1.05e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQK--ETDFIPVEVMGKSAEYCASYITKGRLVALKGEIR 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTP-SGTAVANFRLAVNRRYKDQDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 545062089  79 VDSYTDkKTEEKRIFTKVHTKMVTSLESSKNNKENKEE 116
Cdd:COG0629   80 TRSWED-KDGQKRYTTEVVADEIQFLGSRPSGGGGGDD 116
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-116 1.05e-34

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 116.09  E-value: 1.05e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQK--ETDFIPVEVMGKSAEYCASYITKGRLVALKGEIR 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTP-SGTAVANFRLAVNRRYKDQDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 545062089  79 VDSYTDkKTEEKRIFTKVHTKMVTSLESSKNNKENKEE 116
Cdd:COG0629   80 TRSWED-KDGQKRYTTEVVADEIQFLGSRPSGGGGGDD 116
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 4-97 4.14e-29

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 101.53  E-value: 4.14e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   4 VCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK-EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVDSY 82
Cdd:cd04496    1 VILIGRLGKDPELRYTP-SGTPVARFSLAVNRRRKDRdEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79

                         90
                 ....*....|....*
gi 545062089  83 TDkKTEEKRIFTKVH 97
Cdd:cd04496   80 ED-KDGQKRYGTEVV 93
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-92 2.99e-28

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 99.23  E-value: 2.99e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089    1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK-EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRV 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTP-NGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79

                          90
                  ....*....|...
gi 545062089   80 DSYTDKKTEEKRI 92
Cdd:pfam00436  80 RKYEDQEGQKRYV 92
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 2-119 1.25e-27

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 99.80  E-value: 1.25e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089    2 NNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK--EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRV 79
Cdd:TIGR00621   5 NKVILVGRLTRDPELRYTP-SGNAVANFTLATNRRWKDQdgEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRT 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 545062089   80 DSYTDkKTEEKRIFTKVHTKMVTSLESSKNNKENKEETPN 119
Cdd:TIGR00621  84 RKWED-QNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGG 122
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-114 3.27e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 88.70  E-value: 3.27e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTP-NGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 545062089  81 SYTDKktEEKRIF-TKVHTKMVTSLESSKNNKENK 114
Cdd:PRK06751  81 NYEGQ--DGKRVYvTEVLAESVQFLEPRNGGGEQR 113
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-116 1.05e-34

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 116.09  E-value: 1.05e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQK--ETDFIPVEVMGKSAEYCASYITKGRLVALKGEIR 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTP-SGTAVANFRLAVNRRYKDQDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 545062089  79 VDSYTDkKTEEKRIFTKVHTKMVTSLESSKNNKENKEE 116
Cdd:COG0629   80 TRSWED-KDGQKRYTTEVVADEIQFLGSRPSGGGGGDD 116
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 4-97 4.14e-29

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 101.53  E-value: 4.14e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   4 VCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK-EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVDSY 82
Cdd:cd04496    1 VILIGRLGKDPELRYTP-SGTPVARFSLAVNRRRKDRdEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79

                         90
                 ....*....|....*
gi 545062089  83 TDkKTEEKRIFTKVH 97
Cdd:cd04496   80 ED-KDGQKRYGTEVV 93
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-92 2.99e-28

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 99.23  E-value: 2.99e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089    1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK-EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRV 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTP-NGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79

                          90
                  ....*....|...
gi 545062089   80 DSYTDKKTEEKRI 92
Cdd:pfam00436  80 RKYEDQEGQKRYV 92
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 2-119 1.25e-27

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 99.80  E-value: 1.25e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089    2 NNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK--EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRV 79
Cdd:TIGR00621   5 NKVILVGRLTRDPELRYTP-SGNAVANFTLATNRRWKDQdgEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRT 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 545062089   80 DSYTDkKTEEKRIFTKVHTKMVTSLESSKNNKENKEETPN 119
Cdd:TIGR00621  84 RKWED-QNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGG 122
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-114 3.27e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 88.70  E-value: 3.27e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTP-NGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 545062089  81 SYTDKktEEKRIF-TKVHTKMVTSLESSKNNKENK 114
Cdd:PRK06751  81 NYEGQ--DGKRVYvTEVLAESVQFLEPRNGGGEQR 113
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-106 3.84e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 85.71  E-value: 3.84e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK07275   2 INNVVLVGRMTRDAELRYTP-SNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                         90       100
                 ....*....|....*....|....*..
gi 545062089  81 SYTDKKTEekRIF-TKVHTKMVTSLES 106
Cdd:PRK07275  81 NYENQQGQ--RVYvTEVVADNFQMLES 105
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-108 5.16e-22

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 83.93  E-value: 5.16e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFkYIPKSGTPVATFTIAIDRDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK06752   2 MNRVVLIGRLTKEPEL-YYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                         90       100
                 ....*....|....*....|....*....
gi 545062089  81 SYTDKktEEKRIF-TKVHTKMVTSLESSK 108
Cdd:PRK06752  81 NYEDD--QGKRIYiTEVVIESITFLERRR 107
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 1-131 4.40e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 79.34  E-value: 4.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIpKSGTPVATFTIAIDRdyvnKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK07459   3 LNSVTLVGRAGRDPEVRYF-ESGSVVCNLTLAVNR----RSRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFD 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 545062089  81 SYTDKKTEEKRIFTKVHtkmVTSLE--SSKNNKENKEETPNlqaiydDPDIPF 131
Cdd:PRK07459  78 RWTDRNTGEDRSKPVIR---VDRLEllGSKRDSEGNANPSN------SSEIPF 121
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-131 5.01e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 79.42  E-value: 5.01e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPKSGTpVATFTIAIDRDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK07274   2 YNKVILIGRLTATPELVKTANDKS-VARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 545062089  81 SYtdKKTEEKRIFTKVHTKMVTSLES--SKNNKENKEETPNLQAIYDDPDIPF 131
Cdd:PRK07274  81 KY--EKDGQTHYVTEVLCQSFQLLESraQRAMRENNVGNDLADLVLEEEELPF 131
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 2-125 1.95e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 74.11  E-value: 1.95e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   2 NNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKEGQK--ETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRV 79
Cdd:PRK08486   3 NKVILVGNLTRDVELRYLP-SGSAIATIGLATSRRFKKQDGEKgeEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTF 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 545062089  80 DSYTDkKTEEKRifTKvHTKMVTSLE-----SSKNNKENKEETPNLQAIYD 125
Cdd:PRK08486  82 ESWMD-QNGQKR--SK-HTITAESMQmldskSDNPQANAMQDNSFHENFNN 128
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-105 3.92e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 67.83  E-value: 3.92e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPKSGTpVATFTIAID---RDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEI 77
Cdd:PRK13732   6 INKVILVGRLGKDPEVRYIPNGGA-VANLQVATSeswRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQL 84

                         90       100
                 ....*....|....*....|....*...
gi 545062089  78 RVDSYTDKKTeeKRIFTKVHTKMVTSLE 105
Cdd:PRK13732  85 RTRSWEDNGI--TRYVTEILVKTTGTMQ 110
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 1-90 2.36e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 60.63  E-value: 2.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAID---RDYVNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEI 77
Cdd:PRK09010   6 VNKVILVGNLGQDPEVRYMP-NGGAVANITLATSeswRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQL 84

                         90
                 ....*....|...
gi 545062089  78 RVDSYTDKKTEEK 90
Cdd:PRK09010  85 RTRKWTDQSGQDR 97
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 1-131 2.03e-11

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 57.60  E-value: 2.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPKsGTPVATFTIAIDRdyvNKEGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIRVD 80
Cdd:PRK06293   1 MMFGYIVGRLGADPEERMTSK-GKRVVVLRLGVKS---RVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPE 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 545062089  81 SYTDKK-TEEKRIFTKVHT-KMVTSLESSKNNKENKEETPNLQAIYDDPDIPF 131
Cdd:PRK06293  77 SYVDKDgSPQSSLVVSVDTiKFSPFGRNEGSRQPSAGEDEGQQRGYDNVSIGF 129
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 1-90 2.26e-11

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 57.64  E-value: 2.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIpKSGTPVATFTIAIDRDYVNKEG--QKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIR 78
Cdd:PRK08763   5 INKVILVGNLGNDPDIKYT-QSGMTITRISLATTSVRKDREGntQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIR 83

                         90
                 ....*....|..
gi 545062089  79 VDSYTDKKTEEK 90
Cdd:PRK08763  84 YDKFTGQDGQER 95
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 2-90 5.05e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 54.42  E-value: 5.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   2 NNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK---EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEIR 78
Cdd:PRK06958   5 NKVILVGNLGADPEVRYLP-SGDAVANIRLATTDRYKDKasgEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIR 83

                         90
                 ....*....|..
gi 545062089  79 VDSYTDKKTEEK 90
Cdd:PRK06958  84 TRKWQGQDGQDR 95
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 1-100 1.15e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 53.39  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNKE-GQK--ETDFIPVEVMGKSAEYCASYITKGRLVALKGEI 77
Cdd:PRK05733   5 VNKVILVGTCGQDPEVRYLP-NGNAVTNLSLATSEQWTDKQsGQKveRTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKL 83

                         90       100
                 ....*....|....*....|...
gi 545062089  78 RVDSYtdKKTEEKRIFTKVHTKM 100
Cdd:PRK05733  84 QTREW--EKDGIKRYTTEIVVDM 104
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 3-91 3.76e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 51.96  E-value: 3.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   3 NVCLVGRLTKDPEFKYIPkSGTPVATFTIA-IDRDYVNKEGQ---KETDFIPVEVMGKSAEYCASYITKGRLVALKGEIR 78
Cdd:PRK07772   6 TITVVGNLTADPELRFTP-SGAAVANFTVAsTPRTFDRQTNEwkdGEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLK 84

                         90
                 ....*....|...
gi 545062089  79 VDSYTDKKTeEKR 91
Cdd:PRK07772  85 QRSYETREG-EKR 96
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 1-90 1.14e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 45.34  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIPkSGTPVATFTIAIDRDYVNK---EGQKETDFIPVEVMGKSAEYCASYITKGRLVALKGEI 77
Cdd:PRK06863   4 INKVIIVGHLGNDPEIRTMP-NGEAVANISVATSESWTDKntgERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRL 82

                         90
                 ....*....|...
gi 545062089  78 RVDSYTDKKTEEK 90
Cdd:PRK06863  83 KTRKWQDQNGQDR 95
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 1-90 2.00e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 41.71  E-value: 2.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKYIpKSGTPVATFTIAID---RDYVNKEGQKETDFIPV----EVMGKSAEycaSYITKGRLVAL 73
Cdd:PRK06341   5 VNKVILIGNLGADPEIRRT-QDGRPIANLRIATSetwRDRNSGERKEKTEWHRVvifnEGLCKVAE---QYLKKGAKVYI 80

                         90
                 ....*....|....*..
gi 545062089  74 KGEIRVDSYTDKKTEEK 90
Cdd:PRK06341  81 EGQLQTRKWTDQSGVER 97
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 1-131 5.15e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 37.78  E-value: 5.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545062089   1 MNNVCLVGRLTKDPEFKyIPKSGTPVATFTIA---IDRDYVNKEGQKETDFIPVEVMGKS-AEYCASYITKGRLVALKGE 76
Cdd:PRK06642   5 LNKVILIGNVGRDPEIR-TTGEGKKIINLSLAtteTWKDRITSERKERTEWHRVVIFSEGlVSVVERYVTKGSKLYIEGS 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 545062089  77 IRVDSYTDKKTEEK---RIFTKVHTKMVTSLESSKNNKENKE---------ETPNLQAIYDDPD--IPF 131
Cdd:PRK06642  84 LQTRKWNDNSGQEKyttEVVLQNFNSQLILLDSKNSNNHNQDsghseykhpETKNHSFDHSDLDdeIPF 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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