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Conserved domains on  [gi|654307685|ref|WP_027821221|]
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MULTISPECIES: DUF5388 domain-containing protein [Lactobacillaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5388 super family cl38646
Family of unknown function (DUF5388); This is a family of unknown function found in ...
 38-108 7.05e-18

Family of unknown function (DUF5388); This is a family of unknown function found in Lactobacillales.


The actual alignment was detected with superfamily member pfam17363:

Pssm-ID: 375154  Cd Length: 70  Bit Score: 71.58  E-value: 7.05e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654307685   38 SAEKIPTFDVNMRVDNHTRNAVLALSkATADKRSASEMVSLMIESYLESLTPQTRDTYDELVSMMETKDKL 108
Cdd:pfam17363   1 SANDSVTFDANVRVDNHIRNKIQALA-NIGLAKSQKEAVDNAVDSFIDSLSPSDRKRFKFQLETLEEKDVL 70
 
Name Accession Description Interval E-value
DUF5388 pfam17363
Family of unknown function (DUF5388); This is a family of unknown function found in ...
 38-108 7.05e-18

Family of unknown function (DUF5388); This is a family of unknown function found in Lactobacillales.


Pssm-ID: 375154  Cd Length: 70  Bit Score: 71.58  E-value: 7.05e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654307685   38 SAEKIPTFDVNMRVDNHTRNAVLALSkATADKRSASEMVSLMIESYLESLTPQTRDTYDELVSMMETKDKL 108
Cdd:pfam17363   1 SANDSVTFDANVRVDNHIRNKIQALA-NIGLAKSQKEAVDNAVDSFIDSLSPSDRKRFKFQLETLEEKDVL 70
 
Name Accession Description Interval E-value
DUF5388 pfam17363
Family of unknown function (DUF5388); This is a family of unknown function found in ...
 38-108 7.05e-18

Family of unknown function (DUF5388); This is a family of unknown function found in Lactobacillales.


Pssm-ID: 375154  Cd Length: 70  Bit Score: 71.58  E-value: 7.05e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654307685   38 SAEKIPTFDVNMRVDNHTRNAVLALSkATADKRSASEMVSLMIESYLESLTPQTRDTYDELVSMMETKDKL 108
Cdd:pfam17363   1 SANDSVTFDANVRVDNHIRNKIQALA-NIGLAKSQKEAVDNAVDSFIDSLSPSDRKRFKFQLETLEEKDVL 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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