NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|736793166|ref|WP_034795404|]
View 

YjcB family protein [Ewingella americana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YjcB super family cl24494
Family of unknown function; This family of proteins is found in bacteria. Proteins in this ...
 1-89 2.19e-36

Family of unknown function; This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


The actual alignment was detected with superfamily member pfam15940:

Pssm-ID: 435031  Cd Length: 88  Bit Score: 117.96  E-value: 2.19e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736793166   1 MGTLATGLMMMRWELLSAFLMFCTSQLNIRCRQSSHNVMAFVCSGIGLTVTCFFVMSLMGISYNaeAVAQFWSVSKDVFF 80
Cdd:pfam15940  1 MGTLTTGVLLMRWELLSAVLMFLASQLNIQCRRSDYNGLAVICSGLGIVAACWFAMGLLGITLA--DVAAIWANTKDVMI 78


                 ....*....
gi 736793166  81 DVMSKTPTD 89
Cdd:pfam15940 79 EMMSQTPPD 87
 
Name Accession Description Interval E-value
YjcB pfam15940
Family of unknown function; This family of proteins is found in bacteria. Proteins in this ...
 1-89 2.19e-36

Family of unknown function; This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 435031  Cd Length: 88  Bit Score: 117.96  E-value: 2.19e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736793166   1 MGTLATGLMMMRWELLSAFLMFCTSQLNIRCRQSSHNVMAFVCSGIGLTVTCFFVMSLMGISYNaeAVAQFWSVSKDVFF 80
Cdd:pfam15940  1 MGTLTTGVLLMRWELLSAVLMFLASQLNIQCRRSDYNGLAVICSGLGIVAACWFAMGLLGITLA--DVAAIWANTKDVMI 78


                 ....*....
gi 736793166  81 DVMSKTPTD 89
Cdd:pfam15940 79 EMMSQTPPD 87
 
Name Accession Description Interval E-value
YjcB pfam15940
Family of unknown function; This family of proteins is found in bacteria. Proteins in this ...
 1-89 2.19e-36

Family of unknown function; This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 435031  Cd Length: 88  Bit Score: 117.96  E-value: 2.19e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736793166   1 MGTLATGLMMMRWELLSAFLMFCTSQLNIRCRQSSHNVMAFVCSGIGLTVTCFFVMSLMGISYNaeAVAQFWSVSKDVFF 80
Cdd:pfam15940  1 MGTLTTGVLLMRWELLSAVLMFLASQLNIQCRRSDYNGLAVICSGLGIVAACWFAMGLLGITLA--DVAAIWANTKDVMI 78


                 ....*....
gi 736793166  81 DVMSKTPTD 89
Cdd:pfam15940 79 EMMSQTPPD 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH