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Conserved domains on  [gi|851216951|ref|WP_048112081|]
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tetratricopeptide repeat protein [Candidatus Methanoplasma termitum]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11434433)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
89-325 2.23e-50

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 172.03  E-value: 2.23e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951  89 KNVNAAELDKLISLKLRGEQRNTDACRELFDIYTEGRPPAKKNHRVAIKWYTICAEEDDVFAQNTVGFMYLMGKGVSKDK 168
Cdd:COG0790    4 AAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 169 DKAVFWLKKAAENGSADAMYHMGEMYETGLCfTEPDIKQALIWYQLAAEAGSADAQYSLAAIHSVQKTRQFDPAKTVHYL 248
Cdd:COG0790   84 EKALEWFEKAAEQGDAEAQYNLGLMYEEGLG-VPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWY 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 851216951 249 EKASAQGHGEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAA 325
Cdd:COG0790  163 RKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
267-479 8.87e-42

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 149.31  E-value: 8.87e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 267 YAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAASCNGYAQYALAVMYGNGDYYN 346
Cdd:COG0790    1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 347 KDDKMAVKYFTEAAEMGEVNSQYSLGCFYYEGRGVEKSEKDAALWLGQAAEQGHPGAKAFLGMLTINGRGVEQDIDEGMR 426
Cdd:COG0790   81 KDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAE 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 851216951 427 LLNESADYGYFEGQFYLGKIYMEGKIVKRNIPRAKKYLSMAAKQGDPDAKKLL 479
Cdd:COG0790  161 WYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNL 213
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
89-325 2.23e-50

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 172.03  E-value: 2.23e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951  89 KNVNAAELDKLISLKLRGEQRNTDACRELFDIYTEGRPPAKKNHRVAIKWYTICAEEDDVFAQNTVGFMYLMGKGVSKDK 168
Cdd:COG0790    4 AAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 169 DKAVFWLKKAAENGSADAMYHMGEMYETGLCfTEPDIKQALIWYQLAAEAGSADAQYSLAAIHSVQKTRQFDPAKTVHYL 248
Cdd:COG0790   84 EKALEWFEKAAEQGDAEAQYNLGLMYEEGLG-VPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWY 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 851216951 249 EKASAQGHGEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAA 325
Cdd:COG0790  163 RKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
267-479 8.87e-42

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 149.31  E-value: 8.87e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 267 YAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAASCNGYAQYALAVMYGNGDYYN 346
Cdd:COG0790    1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 347 KDDKMAVKYFTEAAEMGEVNSQYSLGCFYYEGRGVEKSEKDAALWLGQAAEQGHPGAKAFLGMLTINGRGVEQDIDEGMR 426
Cdd:COG0790   81 KDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAE 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 851216951 427 LLNESADYGYFEGQFYLGKIYMEGKIVKRNIPRAKKYLSMAAKQGDPDAKKLL 479
Cdd:COG0790  161 WYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNL 213
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 257-291 1.01e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 45.24  E-value: 1.01e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 851216951   257 GEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSG 291
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 184-219 7.09e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 42.51  E-value: 7.09e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 851216951  184 ADAMYHMGEMYETGLcFTEPDIKQALIWYQLAAEAG 219
Cdd:pfam08238   1 AEAQYRLGYLYLYGL-GVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 438-472 9.83e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.16  E-value: 9.83e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 851216951   438 EGQFYLGKIYMEGKIVKRNIPRAKKYLSMAAKQGD 472
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 330-363 9.46e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.43  E-value: 9.46e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 851216951  330 YAQYALAVMYGNGDYYNKDDKMAVKYFTEAAEMG 363
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
89-325 2.23e-50

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 172.03  E-value: 2.23e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951  89 KNVNAAELDKLISLKLRGEQRNTDACRELFDIYTEGRPPAKKNHRVAIKWYTICAEEDDVFAQNTVGFMYLMGKGVSKDK 168
Cdd:COG0790    4 AAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 169 DKAVFWLKKAAENGSADAMYHMGEMYETGLCfTEPDIKQALIWYQLAAEAGSADAQYSLAAIHSVQKTRQFDPAKTVHYL 248
Cdd:COG0790   84 EKALEWFEKAAEQGDAEAQYNLGLMYEEGLG-VPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWY 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 851216951 249 EKASAQGHGEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAA 325
Cdd:COG0790  163 RKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
211-433 5.11e-49

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 168.18  E-value: 5.11e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 211 WYQLAAEAGSADAQYSLAAIHSVQKTRQFDPAKTVHYLEKASAQGHGEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRS 290
Cdd:COG0790   17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQ 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 291 GFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAASCNGYAQYALAVMYGNGDYYNKDDKMAVKYFTEAAEMGEVNSQYS 370
Cdd:COG0790   97 GDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYN 176

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 851216951 371 LGCFYYEGRGVEKSEKDAALWLGQAAEQGHPGAKAFLGMLTINGRGVEQDIDEGMRLLNESAD 433
Cdd:COG0790  177 LGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
159-398 4.17e-46

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 160.48  E-value: 4.17e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 159 LMGKGVSKDKDKAVFWLKKAAENGSADAMYHMGEMYETGLCFTEPDIKQALIWYQLAAEAGSADAQYSLAAIHSVQKTRQ 238
Cdd:COG0790    1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 239 FDPAKTVHYLEKASAQGHGEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAE 318
Cdd:COG0790   81 KDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAE 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 319 WFEKAAASCNGYAQYALAVMYGNGDYYNKDDKMAVKYFTEAAEMGEVNSQYSLGCFYYEGRGVEKSEKDAALWLGQAAEQ 398
Cdd:COG0790  161 WYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
267-479 8.87e-42

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 149.31  E-value: 8.87e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 267 YAYGNGVKRNEEKAVSLLEASCRSGFQQAMVDYANMRFEGDVLKRDPAIAAEWFEKAAASCNGYAQYALAVMYGNGDYYN 346
Cdd:COG0790    1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 347 KDDKMAVKYFTEAAEMGEVNSQYSLGCFYYEGRGVEKSEKDAALWLGQAAEQGHPGAKAFLGMLTINGRGVEQDIDEGMR 426
Cdd:COG0790   81 KDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAE 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 851216951 427 LLNESADYGYFEGQFYLGKIYMEGKIVKRNIPRAKKYLSMAAKQGDPDAKKLL 479
Cdd:COG0790  161 WYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNL 213
TPR COG0790
TPR repeat [General function prediction only];
25-181 4.88e-14

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 71.50  E-value: 4.88e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951  25 DLNKAAEMLERLSSEGNGAAQYLFSLFLLTGTSVLKDNVTATDLLVLSAASGNEDA-----IILKDEIDKNVNAAELDKL 99
Cdd:COG0790   82 DYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAqynlgLLYLNGEGVPKDPAKAAEW 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851216951 100 isLKLRGEQRNTDACRELFDIYTEGRPpAKKNHRVAIKWYTICAEEDDVFAQNTVGFMYLMGKGVSKDKDKAVFWLKKAA 179
Cdd:COG0790  162 --YRKAAEQGDADAQYNLGVLYENGRG-VPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAA 238


                 ..
gi 851216951 180 EN 181
Cdd:COG0790  239 EQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 257-291 1.01e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 45.24  E-value: 1.01e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 851216951   257 GEAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSG 291
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 150-183 1.12e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 44.86  E-value: 1.12e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 851216951   150 AQNTVGFMYLMGKGVSKDKDKAVFWLKKAAENGS 183
Cdd:smart00671   3 AQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 184-219 7.09e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 42.51  E-value: 7.09e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 851216951  184 ADAMYHMGEMYETGLcFTEPDIKQALIWYQLAAEAG 219
Cdd:pfam08238   1 AEAQYRLGYLYLYGL-GVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 438-472 9.83e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.16  E-value: 9.83e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 851216951   438 EGQFYLGKIYMEGKIVKRNIPRAKKYLSMAAKQGD 472
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 150-182 9.99e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 42.12  E-value: 9.99e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 851216951  150 AQNTVGFMYLMGKGVSKDKDKAVFWLKKAAENG 182
Cdd:pfam08238   3 AQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 184-220 1.32e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.78  E-value: 1.32e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 851216951   184 ADAMYHMGEMYETGLCfTEPDIKQALIWYQLAAEAGS 220
Cdd:smart00671   1 AEAQYNLGQMYEYGLG-VPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 258-291 1.70e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 41.74  E-value: 1.70e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 851216951  258 EAQYQLGMMYAYGNGVKRNEEKAVSLLEASCRSG 291
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 365-400 1.90e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.39  E-value: 1.90e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 851216951   365 VNSQYSLGCFYYEGRGVEKSEKDAALWLGQAAEQGH 400
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 330-363 9.46e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.43  E-value: 9.46e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 851216951  330 YAQYALAVMYGNGDYYNKDDKMAVKYFTEAAEMG 363
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 329-363 1.05e-04

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 39.46  E-value: 1.05e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 851216951   329 GYAQYALAVMYGNGDYYNKDDKMAVKYFTEAAEMG 363
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 367-399 3.43e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 35.19  E-value: 3.43e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 851216951  367 SQYSLGCFYYEGRGVEKSEKDAALWLGQAAEQG 399
Cdd:pfam08238   3 AQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 294-325 9.83e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 33.65  E-value: 9.83e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 851216951  294 QAMVDYANMRFEGDVLKRDPAIAAEWFEKAAA 325
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAE 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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