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Conserved domains on  [gi|898319578|ref|WP_049584417|]
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MULTISPECIES: TIGR03758 family integrating conjugative element protein [Photorhabdus]

Protein Classification

TIGR03758 family integrating conjugative element protein( domain architecture ID 10569409)

TIGR03758 family integrating conjugative element protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3262 pfam11660
Protein of unknown function (DUF3262); This family of proteins with unknown function appears ...
 1-76 2.74e-20

Protein of unknown function (DUF3262); This family of proteins with unknown function appears to be restricted to Proteobacteria.


:

Pssm-ID: 431986  Cd Length: 75  Bit Score: 76.19  E-value: 2.74e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 898319578   1 MNEVQRNAFRAASGnLDPHVMQFLCIGLLIAVLFLWAAWGIVDVWQGWANEKVREAAMNRFVIRVALLLVMAIWMF 76
Cdd:pfam11660  1 MTAAQLAAFQAASG-VSPSQLSLVIAGILAVVLLLWAAWAALSVYRGWAENKISFFDMLSFVIRAAILLLVLGFFF 75
 
Name Accession Description Interval E-value
DUF3262 pfam11660
Protein of unknown function (DUF3262); This family of proteins with unknown function appears ...
 1-76 2.74e-20

Protein of unknown function (DUF3262); This family of proteins with unknown function appears to be restricted to Proteobacteria.


Pssm-ID: 431986  Cd Length: 75  Bit Score: 76.19  E-value: 2.74e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 898319578   1 MNEVQRNAFRAASGnLDPHVMQFLCIGLLIAVLFLWAAWGIVDVWQGWANEKVREAAMNRFVIRVALLLVMAIWMF 76
Cdd:pfam11660  1 MTAAQLAAFQAASG-VSPSQLSLVIAGILAVVLLLWAAWAALSVYRGWAENKISFFDMLSFVIRAAILLLVLGFFF 75
conj_TIGR03758 TIGR03758
integrating conjugative element protein, PFL_4701 family; Members of this family of small, ...
 2-67 9.05e-20

integrating conjugative element protein, PFL_4701 family; Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 163470  Cd Length: 65  Bit Score: 74.70  E-value: 9.05e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 898319578   2 NEVQRNAFRAASGnLDPHVMQFLCIGLLIAVLFLWAAWGIVDVWQGWANEKVREAAMNRFVIRVAL 67
Cdd:TIGR03758  1 TSAQQSAFQAASG-IDPQAMNTLILGLVLAVLFLWGAWALLTAYRGWAEGKLRQRALLGSAIRVAL 65
 
Name Accession Description Interval E-value
DUF3262 pfam11660
Protein of unknown function (DUF3262); This family of proteins with unknown function appears ...
 1-76 2.74e-20

Protein of unknown function (DUF3262); This family of proteins with unknown function appears to be restricted to Proteobacteria.


Pssm-ID: 431986  Cd Length: 75  Bit Score: 76.19  E-value: 2.74e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 898319578   1 MNEVQRNAFRAASGnLDPHVMQFLCIGLLIAVLFLWAAWGIVDVWQGWANEKVREAAMNRFVIRVALLLVMAIWMF 76
Cdd:pfam11660  1 MTAAQLAAFQAASG-VSPSQLSLVIAGILAVVLLLWAAWAALSVYRGWAENKISFFDMLSFVIRAAILLLVLGFFF 75
conj_TIGR03758 TIGR03758
integrating conjugative element protein, PFL_4701 family; Members of this family of small, ...
 2-67 9.05e-20

integrating conjugative element protein, PFL_4701 family; Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 163470  Cd Length: 65  Bit Score: 74.70  E-value: 9.05e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 898319578   2 NEVQRNAFRAASGnLDPHVMQFLCIGLLIAVLFLWAAWGIVDVWQGWANEKVREAAMNRFVIRVAL 67
Cdd:TIGR03758  1 TSAQQSAFQAASG-IDPQAMNTLILGLVLAVLFLWGAWALLTAYRGWAEGKLRQRALLGSAIRVAL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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