NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1473806816|ref|WP_118240816|]
View 

carbohydrate ABC transporter permease [Bifidobacterium pseudocatenulatum]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
15-309 4.26e-88

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 265.46  E-value: 4.26e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  15 KTSKNKVSKYSKRKVDPAFYWMTVPAAILVSIFLYWPFLQGAAYSFTNSQGYG-DFKFIGLKNYIAMFQDSRVGHAYLFT 93
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  94 ILIAVLITLGTNILGMFLAVLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALH------IDWLSts 167
Cdd:COG1175    82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGalglepINWLG-- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 168 misNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGA 247
Cdd:COG1175   160 ---DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1473806816 248 FDQVMALTKGGPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 309
Cdd:COG1175   237 FDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
15-309 4.26e-88

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 265.46  E-value: 4.26e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  15 KTSKNKVSKYSKRKVDPAFYWMTVPAAILVSIFLYWPFLQGAAYSFTNSQGYG-DFKFIGLKNYIAMFQDSRVGHAYLFT 93
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  94 ILIAVLITLGTNILGMFLAVLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALH------IDWLSts 167
Cdd:COG1175    82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGalglepINWLG-- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 168 misNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGA 247
Cdd:COG1175   160 ---DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1473806816 248 FDQVMALTKGGPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 309
Cdd:COG1175   237 FDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
36-308 1.37e-27

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 108.37  E-value: 1.37e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  36 MTVPAAILVSIFLYWPFLQGAAYSFTNSQGYG-DFKFIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLAVL 114
Cdd:PRK10561    2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 115 LNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALHIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLL 194
Cdd:PRK10561   82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 195 YLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGP--FF--TINMVLSLKNSLGAFDqvmALTKGGPDSKTETVSYLI 270
Cdd:PRK10561  162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPvsFFllVVNLVYAFFDTFPVID---AATSGGPVQATTTLIYKI 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1473806816 271 FQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGK 308
Cdd:PRK10561  239 YREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 90-297 5.24e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 5.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  90 YLFTILIAVLITLGTNILGMFLAVLLNSKI-AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGqalhidwlstsm 168
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 169 isNPDLAWFPIVFLSIWQGvAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAF 248
Cdd:cd06261    69 --LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1473806816 249 DQVMALTKGGPDskteTVSYLIFQNGLGNGEYSYQMANAVTFFIVLAIL 297
Cdd:cd06261   146 ALVSFLGGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 105-300 4.68e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.69  E-value: 4.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 105 NILGMFLAVLLNSKiaFKNGFRAIFFIPYTLSVLVIGYVFKYIFMtplpalgqalhidwlstsmISNPDLAWFPIVFLSI 184
Cdd:pfam00528   2 IPLGIIAALRRGRR--LDRLLRPLIDLLQALPSFVLAILLVVIAI-------------------LSILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 185 WQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPDSKTE 264
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1473806816 265 TVSYLIFQnglgngeysYQMANAVTFFIVLAILAFV 300
Cdd:pfam00528 141 IEAILGYD---------YPEIQGPVLAAALILLLLN 167
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 41-227 2.23e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 48.91  E-value: 2.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  41 AILVSIFLYWPFLQGAAYSFTNSQGygdfKFIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLA-VLLNSKI 119
Cdd:TIGR03262  11 ILALLLFLLLPLLALLTKSVYDSDG----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 120 AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTplpalgQALHIDWLSTSMISNPdlawFPIVFLSIWQGVAYSTLLYLAGL 199
Cdd:TIGR03262  87 PGKGAFRLVALLPLLAPSLLPAISLIYLFGN------QGLLKGLLGGFSIYGF----WGIVIGEVFYTFPHALMILVTAL 156

                         170       180
                  ....*....|....*....|....*...
gi 1473806816 200 QTIDNEIYEAAAIDGVNAWQNFWQITFP 227
Cdd:TIGR03262 157 SLADGRLYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
15-309 4.26e-88

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 265.46  E-value: 4.26e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  15 KTSKNKVSKYSKRKVDPAFYWMTVPAAILVSIFLYWPFLQGAAYSFTNSQGYG-DFKFIGLKNYIAMFQDSRVGHAYLFT 93
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  94 ILIAVLITLGTNILGMFLAVLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALH------IDWLSts 167
Cdd:COG1175    82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGalglepINWLG-- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 168 misNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGA 247
Cdd:COG1175   160 ---DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1473806816 248 FDQVMALTKGGPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 309
Cdd:COG1175   237 FDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 4-291 2.62e-40

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 142.92  E-value: 2.62e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816   4 AHTANTAKKSAKTSKNKVSKYSKRkvDPAFYWMTVPAAILVSIFLYWPFLqGAAYSFTN---SQGYGDFKFIGLKNYIAM 80
Cdd:COG4209     2 STTAAKAKRKKKKRKKSFLKRLKR--DWQLYLMLLPGLIYLLIFSYLPMY-GIVIAFKDynpFKGIFGSPWVGLKNFKFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  81 FQDSRVGHAYLFTILIAVLITLGTNILGMFLAVLLNS--KIAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTP----LPA 154
Cdd:COG4209    79 FSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIV-YQFLSPdtglVNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 155 LGQALHIDwlSTSMISNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFT 234
Cdd:COG4209   158 LLRALGGE--PINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIV 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1473806816 235 INMVLSLKNSLGA-FDQVMALTKGGPDSKTETVSYLIFQNGLGNGEYSYqmANAVTFF 291
Cdd:COG4209   236 ILLILNIGNILNVgFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSY--ATAVGLF 291
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
36-308 1.37e-27

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 108.37  E-value: 1.37e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  36 MTVPAAILVSIFLYWPFLQGAAYSFTNSQGYG-DFKFIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLAVL 114
Cdd:PRK10561    2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 115 LNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGQALHIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLL 194
Cdd:PRK10561   82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 195 YLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGP--FF--TINMVLSLKNSLGAFDqvmALTKGGPDSKTETVSYLI 270
Cdd:PRK10561  162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPvsFFllVVNLVYAFFDTFPVID---AATSGGPVQATTTLIYKI 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1473806816 271 FQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGK 308
Cdd:PRK10561  239 YREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 34-311 4.60e-23

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 96.37  E-value: 4.60e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  34 YWMTVPAAILVSIFLYWPFLQGAAYSFTNSQGYGDFKF-IGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLA 112
Cdd:COG1176    12 LLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPgFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 113 VLL-NSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMT--PLPALGQALHIDWLSTSMISNPdlawFPIVFLSIWQGVA 189
Cdd:COG1176    92 YFLaRAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRngLLNSLLLALGLIDEPLRLLYTE----FAVVIGLVYVYLP 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 190 YSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALtkGGPDSKteTVSYL 269
Cdd:COG1176   168 FMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVL--MIGNL 243

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1473806816 270 IFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKEKV 311
Cdd:COG1176   244 IYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
34-300 6.40e-19

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 86.75  E-value: 6.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  34 YWMTVPAAILVSIFLYWPFLQGAAYSFTNsqgygdfkfiGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLAV 113
Cdd:COG1178    10 RLLLLLLALLLALLVLLPLLALLLRAFTD----------GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAW 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 114 LLN-SKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFmTPLPALGQALHidwlSTSMISNPDL-AWFPIVFLSIWQGVAYS 191
Cdd:COG1178    80 LLArTDFPGRRLLRWLLLLPLALPPYVVALAWIALF-GPNGLLNTLLR----ALFGLEPPDIyGLGGIILVLVLFNYPYV 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 192 TLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALtkGGpdsKTETVSYLIF 271
Cdd:COG1178   155 YLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GG---GYTTLTTAIY 229

                         250       260
                  ....*....|....*....|....*....
gi 1473806816 272 QngLGNGEYSYQMANAVTFFIVLAILAFV 300
Cdd:COG1178   230 Q--AWLGDFDLGAAAALALVLLLLVLLLL 256
malF PRK10999
maltose ABC transporter permease MalF;
71-304 1.17e-16

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 80.00  E-value: 1.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  71 FIGLKNYIAMFQDSRVGHAYL----FTILIAVLITLGTNILGMFLAVLLN-SKIAFKNGFRAIFFIPYT----LSVLVig 141
Cdd:PRK10999  264 TIGWKNFTRVFTDEGIQKPFIaifiWTVVFSLLTVVLTVAVGMVLACLVQwEALKGKAVYRVLLILPYAvpsfISILI-- 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 142 yvFKYIFMTPLPALGQAL-HIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQN 220
Cdd:PRK10999  342 --FKGLFNQSFGEINMMLsALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQN 419

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 221 FWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPDSKTET---------VSY---LIFQNGlGNGEYSYQMANAV 288
Cdd:PRK10999  420 FFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTtpagytdllVSYtyrIAFEGG-GGQDFGLAAAIAT 498

                         250
                  ....*....|....*.
gi 1473806816 289 TFFIVLAILAFVQLKF 304
Cdd:PRK10999  499 LIFLLVGALAILNLKA 514
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 41-300 2.82e-16

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 77.07  E-value: 2.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  41 AILVSIFLYWPFLQGAAYSFtNSQGYGDFKFIG--LKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLAVLLN-S 117
Cdd:COG1177    13 LALVLLFLYLPILVLVLYSF-NDSWFLTFPPEGftLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALArY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 118 KIAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTPLPALGQALHIdWLSTSMISnpdlawFPIVFLSIwqgvaystllyLA 197
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVAL-LLLFSALGLSGGLWGL-ILAHVVFT------LPFVVLVV-----------LA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 198 GLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFdqVMALTKGGPDskTETVSYLIFqNGLGN 277
Cdd:COG1177   153 RLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEF--VITLFLAGPG--VTTLPVYIY-SMIRR 227

                         250       260
                  ....*....|....*....|...
gi 1473806816 278 GeySYQMANAVTFFIVLAILAFV 300
Cdd:COG1177   228 G--ISPEINALSTLLILLSLLLL 248
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
10-300 5.19e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 72.12  E-value: 5.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  10 AKKSAKTSKNKVSKYSKRKVDPAFYWMTVPAAILVSIFLYWPFLQGAAYSFTNSQGYGdfkfIGLKNYIAMFQDSRVGHA 89
Cdd:COG1178   264 RRRRYATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDN----LTLDNYRFVLLDPSLLRA 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  90 YLFTILIAVLITLGTNILGMFLAVLLN-SKIAFKNGFRAIFFIPYTLS--VLVIGYVFKYIFMTPLPaLGQALHIDWLST 166
Cdd:COG1178   340 LLNSLLLALLAALLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPgiVLGLGLLLLFNRPLPLL-LYGTLAILVLAY 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 167 SMIsnpdlaWFPIVFLSIwqgvaystllyLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLG 246
Cdd:COG1178   419 VVR------FLPFALRSL-----------EAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1473806816 247 AFDQVMALtkGGPDskTETVSYLIFQNglgNGEYSYQMANAVTFFIVLAILAFV 300
Cdd:COG1178   482 ELSATLLL--RPPG--FETLAVLIYQL---ASSGRYGEAAALALLLVLVSLLPV 528
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 90-297 5.24e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 5.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  90 YLFTILIAVLITLGTNILGMFLAVLLNSKI-AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPALGqalhidwlstsm 168
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 169 isNPDLAWFPIVFLSIWQGvAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAF 248
Cdd:cd06261    69 --LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1473806816 249 DQVMALTKGGPDskteTVSYLIFQNGLGNGEYSYQMANAVTFFIVLAIL 297
Cdd:cd06261   146 ALVSFLGGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 26-302 1.05e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 66.70  E-value: 1.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  26 KRKVDPAFYWMTVPAAILVSIFLYWPFLQGAAYSFTnsqgygdfkfIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTN 105
Cdd:COG0555     2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAG----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 106 ILGMFLAVLLnSKIAF--KNGFRAIFFIPYTLSVLVIGYVFKYIFMTPlPALGQALH---IDWLSTsmisnpdlaWFPIV 180
Cdd:COG0555    72 VFGLPLAWVL-VRYRFpgKRLVDALVDLPFALPTAVAGIALLLLFGPN-GWLGQLLAplgIKVAFT---------PLGIV 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 181 FLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTkGGPD 260
Cdd:COG0555   141 LAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIA-GNLP 219

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1473806816 261 SKTETVSYLIFQNGLgngEYSYQMANAVTffIVLAILAFVQL 302
Cdd:COG0555   220 MKTEILPLLIYLKLE---EGDYAGATAIA--LVLLLISFLLL 256
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 22-231 1.16e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 60.88  E-value: 1.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  22 SKYSKRKVDPAFYWMTVPAAILVSIFLYWPFLQGAAYSFTNSQGYGDFKF------IGLKNYIAMFQDSRVGHAYLFTIL 95
Cdd:COG0395     2 SATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPsllpseFTLENYRAAFTDGPFGRYLLNSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  96 IAVLITLGTNILGMFLAVLLnSKIAFKnGFRAIFFIpyTLSVLVIGYVfkyIFMTPLPALGQALHidWLSTsmisnpdla 175
Cdd:COG0395    82 VAVVSTVLSLLLSSLAAYAL-ARFRFR-GRKLLFLL--ILATLMIPGQ---VLLIPLYLLFRQLG--LLNT--------- 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1473806816 176 WFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGP 231
Cdd:COG0395   144 YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKP 199
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 105-300 4.68e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.69  E-value: 4.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 105 NILGMFLAVLLNSKiaFKNGFRAIFFIPYTLSVLVIGYVFKYIFMtplpalgqalhidwlstsmISNPDLAWFPIVFLSI 184
Cdd:pfam00528   2 IPLGIIAALRRGRR--LDRLLRPLIDLLQALPSFVLAILLVVIAI-------------------LSILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 185 WQGVAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTKGGPDSKTE 264
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1473806816 265 TVSYLIFQnglgngeysYQMANAVTFFIVLAILAFV 300
Cdd:pfam00528 141 IEAILGYD---------YPEIQGPVLAAALILLLLN 167
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 26-231 5.26e-09

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 56.17  E-value: 5.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  26 KRKVDPAFYWMTVPAAILVSIFLYwPFLQGAAYSFTNSQGygdfkfIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTN 105
Cdd:PRK15050   18 RRRRLRPLLWLLLPLLVLAPLVVY-PLVRVVLQSLTGEHG------LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 106 ILGMFLAVLLnskiafkngfraiFFIPYTLSVLVIGYVFKYIfmtPLPALGQALHIDWL--STSMISNPDLAWF-----P 178
Cdd:PRK15050   91 VLGVLLALVL-------------AFVPFPGASLVGRFIDTFV---AFPSFLITLAFTFLygSAGSVNIALQRLFgleapP 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1473806816 179 IVFL-SIWQGVAYSTLLY--------LAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGP 231
Cdd:PRK15050  155 LDFLySPGGVILAEITFYtpfvvrplLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 47-310 5.43e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 50.24  E-value: 5.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  47 FLYWPFLQGAAYSFTNSQGYGDFKFIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLAVLLNSKIAFK--NG 124
Cdd:PRK10592   22 FLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFGRFRgsNG 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 125 FRAIFFIPYTLSVLVIGYVFKYIFMtplpALGQAlhIDWLStsmisnpDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDN 204
Cdd:PRK10592  102 FAFMITAPLVMPDVITGLSLLLLFV----ALAHA--IGWPA-------DRGMLTIWLAHVTFCTAYVAVVISSRLRELDR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 205 EIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGafDQVMALTKGGPDSKteTVSYLIFQNgLGNGEYSYQM 284
Cdd:PRK10592  169 SIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLD--DLVIASFVSGPGAT--TLPMLVFSS-VRMGVNPEIN 243

                         250       260
                  ....*....|....*....|....*.
gi 1473806816 285 ANAVTFFIVLAILAFVQLKFFSGKEK 310
Cdd:PRK10592  244 ALATLILGVVGIVGFIAWYLMARAEK 269
modB PRK09421
molybdate ABC transporter permease subunit;
95-248 1.27e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 48.38  E-value: 1.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  95 LIAVLITLGtniLGMFLAVLLNSK-IAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTPLPALGQALhidwlstsmisnpd 173
Cdd:PRK09421   19 SVAVLFSLP---FGILVAWLLARCrFPGKSLLDSLLHLPLVLPPVVTGYLL-LISMGRRGFIGQWL-------------- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 174 LAWFPIVFLSIWQGVAYST------LLYLA---GLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNS 244
Cdd:PRK09421   81 YEWFGISFAFSWRGAALAAavmafpLMVRAirlSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160


                  ....
gi 1473806816 245 LGAF 248
Cdd:PRK09421  161 LGEF 164
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 41-227 2.23e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 48.91  E-value: 2.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  41 AILVSIFLYWPFLQGAAYSFTNSQGygdfKFIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLA-VLLNSKI 119
Cdd:TIGR03262  11 ILALLLFLLLPLLALLTKSVYDSDG----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 120 AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTplpalgQALHIDWLSTSMISNPdlawFPIVFLSIWQGVAYSTLLYLAGL 199
Cdd:TIGR03262  87 PGKGAFRLVALLPLLAPSLLPAISLIYLFGN------QGLLKGLLGGFSIYGF----WGIVIGEVFYTFPHALMILVTAL 156

                         170       180
                  ....*....|....*....|....*...
gi 1473806816 200 QTIDNEIYEAAAIDGVNAWQNFWQITFP 227
Cdd:TIGR03262 157 SLADGRLYEAARAMGASPWRTFFTVTLP 184
cysT CHL00187
sulfate transport protein; Provisional
 89-272 8.67e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 46.16  E-value: 8.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  89 AYLFTILIAVLITLGTNILGMFLA-VLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPaLGQALhiDWLSTS 167
Cdd:CHL00187   56 AYSLTLSMALIAALINGFFGLLIAwVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGW-IGHLL--SHLGIQ 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 168 MISNPDLAWFPIVFLSIwqgvAYSTLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGA 247
Cdd:CHL00187  133 IVFTKLGVLLAMIFVSF----PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE 208

                         170       180
                  ....*....|....*....|....*
gi 1473806816 248 FDQVMALTKGGPdSKTETVSYLIFQ 272
Cdd:CHL00187  209 YGSIVIISSNIP-FKDLVASVLIFQ 232
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 41-240 2.72e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 44.76  E-value: 2.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  41 AILVSIFLYWPFLQGAAYSFTNSQG----YGDFKFIGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLAVLLn 116
Cdd:COG3833    22 LIILAIIALFPILWVVSASFNPGGSlyssSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAF- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 117 SKIAFK------NGFRAIFFIPYTLSvlvigyvfkyifMTPLPALGQALHIDWLSTSMIsnpdlawfpIVFLSIwqGVAY 190
Cdd:COG3833   101 SRFRFKgrkaglLALLLLQMFPAFLA------------LVALYLLLSALGLLNTLLGLI---------LVYLGG--AIPF 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1473806816 191 STLLYLAGLQTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLS 240
Cdd:COG3833   158 NTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLS 207
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
72-297 4.06e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 44.36  E-value: 4.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816  72 IGLKNYIAMFQDSRVGHAYLFTILIAVLITLGTNILGMFLA-VLLNSKIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFmt 150
Cdd:PRK10971   42 MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAwILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLF-- 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1473806816 151 plpalgqalhidwlSTSMISNPDLAWFPIVFLSIWQGVA----YSTLLYLAG-----LQTIDNEIYEAAAIDGVNAWQNF 221
Cdd:PRK10971  120 --------------SVNGWYGEWLAKFDIKVTYTWLGIAvamaFTSIPFVVRtvqpvLEELGPEYEEAAETLGATRWQSF 185

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1473806816 222 WQITFPLIGPFFTINMVLSLKNSLGAFDQVMALTkGGPDSKTETVSYLIFqngLGNGEYSYQMANAVTFFIVLAIL 297
Cdd:PRK10971  186 RKVVLPELSPALLAGVALSFTRSLGEFGAVIFIA-GNIAWKTEVTSLMIF---VRLQEFDYPAASAIASVILAASL 257
malG PRK10998
maltose ABC transporter permease MalG;
200-240 2.80e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 38.92  E-value: 2.80e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1473806816 200 QTIDNEIYEAAAIDGVNAWQNFWQITFPLIGPFFTINMVLS 240
Cdd:PRK10998  182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILS 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH