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Conserved domains on  [gi|1603852626|ref|WP_134355349|]
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DUF3127 domain-containing protein [Flavobacterium psychrophilum]

Protein Classification

DUF3127 domain-containing protein( domain architecture ID 10568294)

DUF3127 domain-containing protein may have a DNA-binding function

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3127 pfam11325
Domain of unknown function (DUF3127); This bacterial family of proteins has no known function. ...
 3-88 2.09e-31

Domain of unknown function (DUF3127); This bacterial family of proteins has no known function. However, it does show distant similarity to pfam00436, with proteins such as Swiss:D1W984 being similar to both families. This suggests that this family may have a DNA-binding function.


:

Pssm-ID: 431815  Cd Length: 84  Bit Score: 106.82  E-value: 2.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1603852626   3 LIGKLILIDDVKEISAS---FKKRDVAIETDEQYPQKILIEFTQDKCDLLNNYKLDDVVKIAININGREWINpqgekKYF 79
Cdd:pfam11325   1 ITGKIIKILPTQSGTSKngeWKKREFVLETEEQYPQKICFEFFGDKIDLLDNLQVGDEVKVSFNLEGREWNG-----RWF 75


                  ....*....
gi 1603852626  80 NSLRGSKVE 88
Cdd:pfam11325  76 NSIRAWRVE 84
 
Name Accession Description Interval E-value
DUF3127 pfam11325
Domain of unknown function (DUF3127); This bacterial family of proteins has no known function. ...
 3-88 2.09e-31

Domain of unknown function (DUF3127); This bacterial family of proteins has no known function. However, it does show distant similarity to pfam00436, with proteins such as Swiss:D1W984 being similar to both families. This suggests that this family may have a DNA-binding function.


Pssm-ID: 431815  Cd Length: 84  Bit Score: 106.82  E-value: 2.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1603852626   3 LIGKLILIDDVKEISAS---FKKRDVAIETDEQYPQKILIEFTQDKCDLLNNYKLDDVVKIAININGREWINpqgekKYF 79
Cdd:pfam11325   1 ITGKIIKILPTQSGTSKngeWKKREFVLETEEQYPQKICFEFFGDKIDLLDNLQVGDEVKVSFNLEGREWNG-----RWF 75


                  ....*....
gi 1603852626  80 NSLRGSKVE 88
Cdd:pfam11325  76 NSIRAWRVE 84
 
Name Accession Description Interval E-value
DUF3127 pfam11325
Domain of unknown function (DUF3127); This bacterial family of proteins has no known function. ...
 3-88 2.09e-31

Domain of unknown function (DUF3127); This bacterial family of proteins has no known function. However, it does show distant similarity to pfam00436, with proteins such as Swiss:D1W984 being similar to both families. This suggests that this family may have a DNA-binding function.


Pssm-ID: 431815  Cd Length: 84  Bit Score: 106.82  E-value: 2.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1603852626   3 LIGKLILIDDVKEISAS---FKKRDVAIETDEQYPQKILIEFTQDKCDLLNNYKLDDVVKIAININGREWINpqgekKYF 79
Cdd:pfam11325   1 ITGKIIKILPTQSGTSKngeWKKREFVLETEEQYPQKICFEFFGDKIDLLDNLQVGDEVKVSFNLEGREWNG-----RWF 75


                  ....*....
gi 1603852626  80 NSLRGSKVE 88
Cdd:pfam11325  76 NSIRAWRVE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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