NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1802716829|ref|WP_161507365|]
View 

maltose ABC transporter permease MalF [Aeromonas media]

Protein Classification

sugar transporter permease( domain architecture ID 11485143)

sugar transporter permease similar to MalF, which is one of the two integral inner membrane subunits (MalFG) of the maltose ABC transport complex (MalFGKE); the MalFG subunits form a heterodimeric translocation pore with a dimer of the ATPase subunit (MalK)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
7-546 0e+00

maltose ABC transporter permease MalF;


:

Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 881.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829   7 IESYAGPKK---DKYVWLKWTMAALIAVLNGYAAVMMYASGEWVFALLDLVVVSVGLYVFMNKKTYAHRYIFPGVAGMVV 83
Cdd:PRK10999    1 TAMMDVIKKkhwWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829  84 FIIFPLAYTIGIAFTNYSGSNLLSLEQARDFHLKKIYKvTGGEFDFTLLSGENNqFQLLLQQDD--QSFISQPLTLLNNk 161
Cdd:PRK10999   81 FVLFPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQ-AGKTYNFGLYPAGDE-WQLALTDGEtgKNYLSEPFSLEAG- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 162 arelavregrvhdEPQAVQLQPLNGEAIDQAAPIRAIVDHRTHLSALDLVLPEGNiHLTLSSLRKFAAQKPLYTqlvdga 241
Cdd:PRK10999  158 -------------GEQKLQLKETDALPEGERAPLRVITQNRQALSQITAVLPDGN-KLRMSSLRQFSGTKPLYT------ 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 242 vlksgvVIKDGNLLRDNQSGELMLPNGDTGFYQYIDAEGHFVGKGIAPGFVVSVGWKNFVRIMTDPGIQGPFMQIFVWTV 321
Cdd:PRK10999  218 ------LDDDGTTLTNNQSGVKYRPNNDIGFYQSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTV 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 322 IFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVFKGLFNQNFGEINLFLEAAFGIKPDWYTTP 401
Cdd:PRK10999  292 VFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDP 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 402 FLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFVLIQ 481
Cdd:PRK10999  372 TLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQ 451

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1802716829 482 LLTNGAPDIIGASTPAGTTDLLVNYTYRIAFQGSGGQDYGLASAIATAIFLIVGALALLNLKLSK 546
Cdd:PRK10999  452 LLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAILNLKATK 516
 
Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
7-546 0e+00

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 881.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829   7 IESYAGPKK---DKYVWLKWTMAALIAVLNGYAAVMMYASGEWVFALLDLVVVSVGLYVFMNKKTYAHRYIFPGVAGMVV 83
Cdd:PRK10999    1 TAMMDVIKKkhwWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829  84 FIIFPLAYTIGIAFTNYSGSNLLSLEQARDFHLKKIYKvTGGEFDFTLLSGENNqFQLLLQQDD--QSFISQPLTLLNNk 161
Cdd:PRK10999   81 FVLFPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQ-AGKTYNFGLYPAGDE-WQLALTDGEtgKNYLSEPFSLEAG- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 162 arelavregrvhdEPQAVQLQPLNGEAIDQAAPIRAIVDHRTHLSALDLVLPEGNiHLTLSSLRKFAAQKPLYTqlvdga 241
Cdd:PRK10999  158 -------------GEQKLQLKETDALPEGERAPLRVITQNRQALSQITAVLPDGN-KLRMSSLRQFSGTKPLYT------ 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 242 vlksgvVIKDGNLLRDNQSGELMLPNGDTGFYQYIDAEGHFVGKGIAPGFVVSVGWKNFVRIMTDPGIQGPFMQIFVWTV 321
Cdd:PRK10999  218 ------LDDDGTTLTNNQSGVKYRPNNDIGFYQSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTV 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 322 IFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVFKGLFNQNFGEINLFLEAAFGIKPDWYTTP 401
Cdd:PRK10999  292 VFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDP 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 402 FLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFVLIQ 481
Cdd:PRK10999  372 TLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQ 451

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1802716829 482 LLTNGAPDIIGASTPAGTTDLLVNYTYRIAFQGSGGQDYGLASAIATAIFLIVGALALLNLKLSK 546
Cdd:PRK10999  452 LLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAILNLKATK 516
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
295-546 3.45e-65

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 214.23  E-value: 3.45e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 295 VGWKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVqWEQLRGRGFYRVMLILPYAIPAFISILVFKG 374
Cdd:COG1175    60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 375 LFNQNFGEINLFLEAaFGIKP-DWYTTPFLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKI 453
Cdd:COG1175   135 LFNPDYGLLNALLGA-LGLEPiNWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRI 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 454 TVPLLMKPLTPLLIASFAFNFNNFVLIQLLTNGApdiigastPAGTTDLLVNYTYRIAFQgsgGQDYGLASAIATAIFLI 533
Cdd:COG1175   214 TLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLI 282

                         250
                  ....*....|...
gi 1802716829 534 VGALALLNLKLSK 546
Cdd:COG1175   283 ILVLTLLQLRLLR 295
MalF_P2 pfam14785
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ...
 106-296 1.33e-57

Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.


Pssm-ID: 434209  Cd Length: 164  Bit Score: 189.39  E-value: 1.33e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 106 LSLEQARDFHLKKIYKvTGGEFDFTLLSGENNqFQLLL--QQDDQSFISQPLTLLNnkarelavregrvhDEPQAVQLQP 183
Cdd:pfam14785   1 LSFERAQSVLLSRTYQ-SGESYPFTLYPSGDG-YRLALedGESGQLLVSEPFTLDG--------------AGEQKLALEP 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 184 LNGEAIDQAAPIRAIVDHRTHLSALDLVLPEGNiHLTLSSLRKFAAQKPLYTqlvdgavlksgvVIKDGNLLRDNQSGEL 263
Cdd:pfam14785  65 AESLPTGEKAPLREITQNRQALSQLVLVLPDGE-ELRMSGLRQFAAVKPLYT------------LQEDGETLTNNQTGEI 131

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1802716829 264 MLPNGDTGFYQYIDAEGHFVGKGIAPGFVVSVG 296
Cdd:pfam14785 132 YRPNMEIGFYQAVDEDGEWVGERVSPGFTVTIG 164
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 317-534 6.43e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 84.64  E-value: 6.43e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 317 FVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVFKGLFNQNFGeinlfleaafgikpd 396
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 397 WYTTPFLAKVMILIVNTWLGyPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNN 476
Cdd:cd06261    66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802716829 477 FVLIQLLTNGAPDIIGASTpagttdllvnytyRIAFQGSGGQDYGLASAIATAIFLIV 534
Cdd:cd06261   145 FALVSFLGGGEAPGPGTGL-------------LLIFAILFPGDLGVAAAVALILLLLS 189
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 277-501 6.01e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 55.46  E-value: 6.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 277 DAEGHFVGKGiapgfvvsvgwkNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVM 356
Cdd:TIGR03262  32 DSDGDFIGLA------------NFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 357 LILPYAIP------AFISILVFKGLFNQNFGEINLFleaafgikpdwyttpflAKVMILIVNTWLGYPYMMILCMGLLKA 430
Cdd:TIGR03262  96 ALLPLLAPsllpaiSLIYLFGNQGLLKGLLGGFSIY-----------------GFWGIVIGEVFYTFPHALMILVTALSL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1802716829 431 IPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFvliqlltnGAPDIIGASTPAGTTD 501
Cdd:TIGR03262 159 ADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATD 221
 
Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
7-546 0e+00

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 881.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829   7 IESYAGPKK---DKYVWLKWTMAALIAVLNGYAAVMMYASGEWVFALLDLVVVSVGLYVFMNKKTYAHRYIFPGVAGMVV 83
Cdd:PRK10999    1 TAMMDVIKKkhwWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829  84 FIIFPLAYTIGIAFTNYSGSNLLSLEQARDFHLKKIYKvTGGEFDFTLLSGENNqFQLLLQQDD--QSFISQPLTLLNNk 161
Cdd:PRK10999   81 FVLFPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQ-AGKTYNFGLYPAGDE-WQLALTDGEtgKNYLSEPFSLEAG- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 162 arelavregrvhdEPQAVQLQPLNGEAIDQAAPIRAIVDHRTHLSALDLVLPEGNiHLTLSSLRKFAAQKPLYTqlvdga 241
Cdd:PRK10999  158 -------------GEQKLQLKETDALPEGERAPLRVITQNRQALSQITAVLPDGN-KLRMSSLRQFSGTKPLYT------ 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 242 vlksgvVIKDGNLLRDNQSGELMLPNGDTGFYQYIDAEGHFVGKGIAPGFVVSVGWKNFVRIMTDPGIQGPFMQIFVWTV 321
Cdd:PRK10999  218 ------LDDDGTTLTNNQSGVKYRPNNDIGFYQSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTV 291

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 322 IFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVFKGLFNQNFGEINLFLEAAFGIKPDWYTTP 401
Cdd:PRK10999  292 VFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDP 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 402 FLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFVLIQ 481
Cdd:PRK10999  372 TLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQ 451

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1802716829 482 LLTNGAPDIIGASTPAGTTDLLVNYTYRIAFQGSGGQDYGLASAIATAIFLIVGALALLNLKLSK 546
Cdd:PRK10999  452 LLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAILNLKATK 516
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
295-546 3.45e-65

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 214.23  E-value: 3.45e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 295 VGWKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVqWEQLRGRGFYRVMLILPYAIPAFISILVFKG 374
Cdd:COG1175    60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 375 LFNQNFGEINLFLEAaFGIKP-DWYTTPFLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKI 453
Cdd:COG1175   135 LFNPDYGLLNALLGA-LGLEPiNWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRI 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 454 TVPLLMKPLTPLLIASFAFNFNNFVLIQLLTNGApdiigastPAGTTDLLVNYTYRIAFQgsgGQDYGLASAIATAIFLI 533
Cdd:COG1175   214 TLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLI 282

                         250
                  ....*....|...
gi 1802716829 534 VGALALLNLKLSK 546
Cdd:COG1175   283 ILVLTLLQLRLLR 295
MalF_P2 pfam14785
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ...
 106-296 1.33e-57

Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.


Pssm-ID: 434209  Cd Length: 164  Bit Score: 189.39  E-value: 1.33e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 106 LSLEQARDFHLKKIYKvTGGEFDFTLLSGENNqFQLLL--QQDDQSFISQPLTLLNnkarelavregrvhDEPQAVQLQP 183
Cdd:pfam14785   1 LSFERAQSVLLSRTYQ-SGESYPFTLYPSGDG-YRLALedGESGQLLVSEPFTLDG--------------AGEQKLALEP 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 184 LNGEAIDQAAPIRAIVDHRTHLSALDLVLPEGNiHLTLSSLRKFAAQKPLYTqlvdgavlksgvVIKDGNLLRDNQSGEL 263
Cdd:pfam14785  65 AESLPTGEKAPLREITQNRQALSQLVLVLPDGE-ELRMSGLRQFAAVKPLYT------------LQEDGETLTNNQTGEI 131

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1802716829 264 MLPNGDTGFYQYIDAEGHFVGKGIAPGFVVSVG 296
Cdd:pfam14785 132 YRPNMEIGFYQAVDEDGEWVGERVSPGFTVTIG 164
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
293-547 1.06e-29

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 122.96  E-value: 1.06e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 293 VSVGWKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVF 372
Cdd:COG1178    36 FTDGLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 373 KGLFNQNfGEINLFLEAAFGIK-PDWYTTPflakvMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFF 451
Cdd:COG1178   112 IALFGPN-GLLNTLLRALFGLEpPDIYGLG-----GIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFR 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 452 KITVPLLMKPLTPLLIASFAFNFNNFvliqlltnGAPDIIGASTPAGTTDLlvnytYRiafQGSGGQDYGLASAIATAIF 531
Cdd:COG1178   186 RVTLPLLRPAIAAGALLVFLLCLADF--------GTPLVLGGGYTTLTTAI-----YQ---AWLGDFDLGAAAALALVLL 249

                         250
                  ....*....|....*.
gi 1802716829 532 LIVGALALLNLKLSKA 547
Cdd:COG1178   250 LLVLLLLLLERRLRRR 265
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
295-543 1.00e-20

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 92.20  E-value: 1.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 295 VGWKNFVRIMTDPgiqgPFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWeQLRGRGFYRVMLILPYAIPAFISILVFKG 374
Cdd:PRK10561   39 VGLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWIF 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 375 LFNQNFGEINLFLEaafGIKPDWYTTPFLAKVMILIV--NTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFK 452
Cdd:PRK10561  114 LFNPGRGLITHFLA---EFGYDWNHAQNSGQAMFLVVfaSVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFK 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 453 ITVPLLMKPLTPLLIAS--FAFnFNNFVLIQLLTNGAPdiigastPAGTTDLLvnytYRIAFQGSGGQDYGLASAIATAI 530
Cdd:PRK10561  191 LALPLIAPVSFFLLVVNlvYAF-FDTFPVIDAATSGGP-------VQATTTLI----YKIYREGFTGLDLSSSAAQSVVL 258

                         250
                  ....*....|...
gi 1802716829 531 FLIVGALALLNLK 543
Cdd:PRK10561  259 MFLVIVLTVVQFR 271
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 295-536 6.02e-20

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 90.92  E-value: 6.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 295 VGWKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQweQLRGRGFYRV---MLILPYaipaFISILV 371
Cdd:COG4209    70 VGLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILALLLN--ELRSKRFKKTvqtISYLPH----FLSWVV 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 372 ----FKGLFNQNFGEINLFLEAaFGIKP-DWYTTPFLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGP 446
Cdd:COG4209   140 vagiVYQFLSPDTGLVNQLLRA-LGGEPiNFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGR 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 447 VQNFFKITVPLLMKPLTPLLIASFAFNFN-NFVLIQLLTNGApdiigastPAGTTDLLVNYTYRIAFQGSggqDYGLASA 525
Cdd:COG4209   219 WQQIWHITLPGIRPTIVILLILNIGNILNvGFEQIYLLYNPL--------NYSTSDVIDTYVYRIGLQNG---DYSYATA 287

                         250
                  ....*....|....*.
gi 1802716829 526 I-----ATAIFLIVGA 536
Cdd:COG4209   288 VglfksVVGLILVLIA 303
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 282-550 3.20e-19

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 87.90  E-value: 3.20e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 282 FVGKGIAPGFVVSVGWKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPY 361
Cdd:COG1176    38 FTTRDPYGGVVPGFTLENYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPF 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 362 AIPAFISILVFKGLFNQNfGEINLFLeAAFGIKP---DWYTTPFLakVMILIVNTWLgyPYMMILCMGLLKAIPEDLYEA 438
Cdd:COG1176   114 WTSFLVRTYAWIVLLGRN-GLLNSLL-LALGLIDeplRLLYTEFA--VVIGLVYVYL--PFMVLPLYAALEKIDPSLLEA 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 439 SAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFVliqlltngAPDIIGastpaGTTDLLVnyTYRIAFQGSGGQ 518
Cdd:COG1176   188 ARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFV--------TPALLG-----GGKVLMI--GNLIYQQFLSAL 252

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1802716829 519 DYGLASAIATAIFLIVGALALLNLKLSKADKL 550
Cdd:COG1176   253 NWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 317-534 6.43e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 84.64  E-value: 6.43e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 317 FVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVFKGLFNQNFGeinlfleaafgikpd 396
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 397 WYTTPFLAKVMILIVNTWLGyPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNN 476
Cdd:cd06261    66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1802716829 477 FVLIQLLTNGAPDIIGASTpagttdllvnytyRIAFQGSGGQDYGLASAIATAIFLIV 534
Cdd:cd06261   145 FALVSFLGGGEAPGPGTGL-------------LLIFAILFPGDLGVAAAVALILLLLS 189
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 297-546 8.65e-16

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 77.46  E-value: 8.65e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 297 WKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILVFkglf 376
Cdd:COG1177    47 LRWYAELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVAL---- 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 377 nqnfgeinLFLEAAFGIKPDWYTtpflakvmILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVP 456
Cdd:COG1177   119 --------LLLFSALGLSGGLWG--------LILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 457 LLMkpltPLLIA----SFAFNFNNFVLIQLLTngapdiigasTPAGTTdlLVNYTYRIAFQGSggqdYGLASAIATAIFL 532
Cdd:COG1177   183 LIA----PGILAgallAFTLSFDEFVITLFLA----------GPGVTT--LPVYIYSMIRRGI----SPEINALSTLLIL 242

                         250
                  ....*....|....
gi 1802716829 533 IVGALALLNLKLSK 546
Cdd:COG1177   243 LSLLLLLLAERLRR 256
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
286-540 6.68e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 70.96  E-value: 6.68e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 286 GIAPGFVVSVGWKNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPA 365
Cdd:COG1178   313 SLTKALDDNLTLDNYRFVLLDPS----LLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPG 388

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 366 F---ISILVFkglFNQNFGeinlfleaafgikPDWYTTPFLakvmILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMD 442
Cdd:COG1178   389 IvlgLGLLLL---FNRPLP-------------LLLYGTLAI----LVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSL 448

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 443 GAGPVQNFFKITVPLLMKPltplLIASFAFNF----NNFVLIQLLtngapdiigasTPAGtTDLLVNYTYRiaFQGSGgq 518
Cdd:COG1178   449 GASPLRTLRRVTLPLLRPG----LLAAALLVFvtsmKELSATLLL-----------RPPG-FETLAVLIYQ--LASSG-- 508

                         250       260
                  ....*....|....*....|..
gi 1802716829 519 DYGLASAIATAIFLIVGALALL 540
Cdd:COG1178   509 RYGEAAALALLLVLVSLLPVLL 530
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 297-538 3.62e-11

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 63.96  E-value: 3.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 297 WKNFVRIMTDpgiqGPFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISI----LVF 372
Cdd:COG0395    60 LENYRAAFTD----GPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLiplyLLF 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 373 K--GLFNQNFGeinlfleaafgikpdwyttpflakvmILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNF 450
Cdd:COG0395   136 RqlGLLNTYWG--------------------------LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIF 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 451 FKITVPLLMKPLTPLLIASFAFNFNNFVLIQLLTNGApdiigASTPAgttdllvnyTYRIA-FQGSGGQDYGL---ASAI 526
Cdd:COG0395   190 WRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSP-----DLRTL---------PVGLAsFQGQYGTDWGLlmaAAVI 255

                         250
                  ....*....|..
gi 1802716829 527 ATAIFLIVGALA 538
Cdd:COG0395   256 ATLPVLILFLFL 267
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 332-539 1.55e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.39  E-value: 1.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 332 LAIGMVMACLVQWeqlRGRGFYRVMLILPYAIPAF-ISILVFKGLFNQNFGeinlfleaafgikpdwytTPFLAKVMILI 410
Cdd:pfam00528   2 IPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFvLAILLVVIAILSILG------------------HGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 411 vntWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFVLIqlltngapDI 490
Cdd:pfam00528  61 ---LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLL--------EF 129

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1802716829 491 IGASTPAGTTDLLVNYTYRIAFqgsggqdyGLASAIATAIFLIVGALAL 539
Cdd:pfam00528 130 LGSWPGLGLLLIEAILGYDYPE--------IQGPVLAAALILLLLNLLV 170
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 277-501 6.01e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 55.46  E-value: 6.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 277 DAEGHFVGKGiapgfvvsvgwkNFVRIMTDPGiqgpFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRGRGFYRVM 356
Cdd:TIGR03262  32 DSDGDFIGLA------------NFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 357 LILPYAIP------AFISILVFKGLFNQNFGEINLFleaafgikpdwyttpflAKVMILIVNTWLGYPYMMILCMGLLKA 430
Cdd:TIGR03262  96 ALLPLLAPsllpaiSLIYLFGNQGLLKGLLGGFSIY-----------------GFWGIVIGEVFYTFPHALMILVTALSL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1802716829 431 IPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFvliqlltnGAPDIIGASTPAGTTD 501
Cdd:TIGR03262 159 ADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATD 221
cysT CHL00187
sulfate transport protein; Provisional
 297-474 7.46e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 47.32  E-value: 7.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 297 WKNFVRIMTDPgiqgpfmqifvwtVIFSACSVAFTLA-----IGMVMACLVQWEQLR----GRGFYRVMLILPYAIPAFI 367
Cdd:CHL00187   41 WSDFLQKATEP-------------IALSAYSLTLSMAliaalINGFFGLLIAWVLVRynfpGKRLLDAAVDLPFALPTSV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 368 SILVFKGLFNQNfGEINLFLEaAFGIKpdwytTPFlAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPV 447
Cdd:CHL00187  108 AGLTLATVYGDN-GWIGHLLS-HLGIQ-----IVF-TKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPW 179

                         170       180
                  ....*....|....*....|....*..
gi 1802716829 448 QNFFKITVPllmkPLTPLLIASFAFNF 474
Cdd:CHL00187  180 QTFWKVIFP----PLIPALLTGLALTF 202
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
294-474 1.49e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 47.06  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 294 SVGWKNFVRIMTDPGIqgpfmqIFVWTVIFSACSVA--FTLAIGMVMACLVQWEQLRGRGFYRVMLILPYAIPAFISILV 371
Cdd:PRK10971   41 QMSWAQYWEVITNPQV------VAAYKVTLLSAFVAsiFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLT 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1802716829 372 FKGLFNQNfgeinlfleaafgikpDWYTTpFLAKVMILIVNTWLG---------YPYMMILCMGLLKAIPEDLYEASAMD 442
Cdd:PRK10971  115 LASLFSVN----------------GWYGE-WLAKFDIKVTYTWLGiavamaftsIPFVVRTVQPVLEELGPEYEEAAETL 177

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1802716829 443 GAGPVQNFFKITVPllmkPLTPLLIASFAFNF 474
Cdd:PRK10971  178 GATRWQSFRKVVLP----ELSPALLAGVALSF 205
TM_PBP2_N pfam16296
N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of ...
 81-111 4.70e-04

N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs, such as Binding-protein-dependent transport systems inner membrane component and Maltose transport permease MalF. It is around 580 residues in length and is mainly found in various species, such as Thermotoga, Dictyoglomus, Thermosipho, Fervidobacterium, Mesotoga and so on. The function of this family is unknown.


Pssm-ID: 435260  Cd Length: 79  Bit Score: 38.86  E-value: 4.70e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1802716829  81 MVVFIIFPLAYTIGIAFTNYSGSNLLSLEQA 111
Cdd:pfam16296   3 LLVFQVFPVLYTASTAFTNYGDGHRGTKEQA 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH