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Conserved domains on  [gi|2046545177|ref|WP_214298963|]
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P-II family nitrogen regulator [Pelotalea chapellei]

Protein Classification

P-II family nitrogen regulator( domain architecture ID 10001244)

P-II family nitrogen regulator controls key processes of nitrogen metabolism in response to the central metabolites ATP, ADP, and 2-oxoglutarate (2-OG), signaling cellular energy, and carbon and nitrogen abundance; P-II family nitrogen regulator modulates the activity of glutamine synthetase

CATH:  3.30.70.120
Gene Ontology:  GO:0006808|GO:0030234
PubMed:  22861350
SCOP:  4001256

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GlnK COG0347
Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and ...
1-112 2.62e-67

Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and metabolism];


:

Pssm-ID: 440116  Cd Length: 112  Bit Score: 197.62  E-value: 2.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:COG0347     1 MKKIEAIIRPFKLDDVKEALEEAGVPGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEIVVSDEDVDKVVEAIIKA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKGTDAI 112
Cdd:COG0347    81 ARTGKIGDGKIFVSPVEEAVRIRTGERGEDAL 112
 
Name Accession Description Interval E-value
GlnK COG0347
Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and ...
1-112 2.62e-67

Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and metabolism];


Pssm-ID: 440116  Cd Length: 112  Bit Score: 197.62  E-value: 2.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:COG0347     1 MKKIEAIIRPFKLDDVKEALEEAGVPGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEIVVSDEDVDKVVEAIIKA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKGTDAI 112
Cdd:COG0347    81 ARTGKIGDGKIFVSPVEEAVRIRTGERGEDAL 112
P-II pfam00543
Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.
1-108 7.72e-57

Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.


Pssm-ID: 459848  Cd Length: 108  Bit Score: 171.14  E-value: 7.72e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:pfam00543   1 MKKIEAIIRPEKLDEVKEALEKAGVPGMTVTEVKGRGRQKGHTELYRGAEYEVDFLPKVKLEIVVSDEDVEKVVEAIIKA 80
                          90       100
                  ....*....|....*....|....*...
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKG 108
Cdd:pfam00543  81 ARTGKIGDGKIFVSPVEDAVRIRTGERG 108
P-II smart00938
Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.
4-105 5.16e-56

Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.


Pssm-ID: 198006  Cd Length: 102  Bit Score: 168.81  E-value: 5.16e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177    4 VEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENTAKT 83
Cdd:smart00938   1 IEAIIRPEKLDEVKEALEEAGVPGMTVSEVKGRGRQKGHTELYRGAEYVVDLLPKVKIEIVVPDEDVEKVVEAIIEAART 80
                           90       100
                   ....*....|....*....|..
gi 2046545177   84 GRIGDGKIFIIPLEEAVRIRTG 105
Cdd:smart00938  81 GKIGDGKIFVLPVEDVVRIRTG 102
PRK10665 PRK10665
P-II family nitrogen regulator;
1-112 4.57e-48

P-II family nitrogen regulator;


Pssm-ID: 182629  Cd Length: 112  Bit Score: 149.31  E-value: 4.57e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:PRK10665    1 MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIISKA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKGTDAI 112
Cdd:PRK10665   81 AYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 112
 
Name Accession Description Interval E-value
GlnK COG0347
Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and ...
1-112 2.62e-67

Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and metabolism];


Pssm-ID: 440116  Cd Length: 112  Bit Score: 197.62  E-value: 2.62e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:COG0347     1 MKKIEAIIRPFKLDDVKEALEEAGVPGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEIVVSDEDVDKVVEAIIKA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKGTDAI 112
Cdd:COG0347    81 ARTGKIGDGKIFVSPVEEAVRIRTGERGEDAL 112
P-II pfam00543
Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.
1-108 7.72e-57

Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.


Pssm-ID: 459848  Cd Length: 108  Bit Score: 171.14  E-value: 7.72e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:pfam00543   1 MKKIEAIIRPEKLDEVKEALEKAGVPGMTVTEVKGRGRQKGHTELYRGAEYEVDFLPKVKLEIVVSDEDVEKVVEAIIKA 80
                          90       100
                  ....*....|....*....|....*...
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKG 108
Cdd:pfam00543  81 ARTGKIGDGKIFVSPVEDAVRIRTGERG 108
P-II smart00938
Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.
4-105 5.16e-56

Nitrogen regulatory protein P-II; P-II modulates the activity of glutamine synthetase.


Pssm-ID: 198006  Cd Length: 102  Bit Score: 168.81  E-value: 5.16e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177    4 VEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENTAKT 83
Cdd:smart00938   1 IEAIIRPEKLDEVKEALEEAGVPGMTVSEVKGRGRQKGHTELYRGAEYVVDLLPKVKIEIVVPDEDVEKVVEAIIEAART 80
                           90       100
                   ....*....|....*....|..
gi 2046545177   84 GRIGDGKIFIIPLEEAVRIRTG 105
Cdd:smart00938  81 GKIGDGKIFVLPVEDVVRIRTG 102
PRK10665 PRK10665
P-II family nitrogen regulator;
1-112 4.57e-48

P-II family nitrogen regulator;


Pssm-ID: 182629  Cd Length: 112  Bit Score: 149.31  E-value: 4.57e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:PRK10665    1 MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIISKA 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKGTDAI 112
Cdd:PRK10665   81 AYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 112
PRK10858 PRK10858
nitrogen regulatory protein P-II;
1-112 3.06e-42

nitrogen regulatory protein P-II;


Pssm-ID: 182784  Cd Length: 112  Bit Score: 134.35  E-value: 3.06e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046545177   1 MKLVEAIIKPFKMDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVDFIPKIKMEIAVPDELVNKVVETIENT 80
Cdd:PRK10858    1 MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRT 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2046545177  81 AKTGRIGDGKIFIIPLEEAVRIRTGEKGTDAI 112
Cdd:PRK10858   81 AQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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