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Conserved domains on  [gi|2128760774|ref|WP_227954161|]
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type II holin [Staphylococcus epidermidis]

Protein Classification

PHA00426 family protein( domain architecture ID 10009695)

PHA00426 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA00426 PHA00426
type II holin
 1-67 1.15e-34

type II holin


:

Pssm-ID: 164801  Cd Length: 67  Bit Score: 111.84  E-value: 1.15e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2128760774  1 MLSFDFNNEVVKAAPIVGTGVADGAARLFWGLSLNEWFYVAAIAYTVVQIGAKVVDKMIDWKRANKE 67
Cdd:PHA00426   1 MLELDFNNEVIKAAPIVGTAGADGAARLFFGLSLNEWFYVAAIAYTVVQIGAKVVDTIIDWKKANKE 67
 
Name Accession Description Interval E-value
PHA00426 PHA00426
type II holin
 1-67 1.15e-34

type II holin


Pssm-ID: 164801  Cd Length: 67  Bit Score: 111.84  E-value: 1.15e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2128760774  1 MLSFDFNNEVVKAAPIVGTGVADGAARLFWGLSLNEWFYVAAIAYTVVQIGAKVVDKMIDWKRANKE 67
Cdd:PHA00426   1 MLELDFNNEVIKAAPIVGTAGADGAARLFFGLSLNEWFYVAAIAYTVVQIGAKVVDTIIDWKKANKE 67
Phage_holin_2_2 pfam10746
Phage holin T7 family, holin superfamily II; Holins are a diverse family of proteins that ...
 5-63 3.68e-23

Phage holin T7 family, holin superfamily II; Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.


Pssm-ID: 431471  Cd Length: 60  Bit Score: 82.82  E-value: 3.68e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2128760774  5 DFNNEVVKAAPIVGTGVADGAARLFWGLSLNEWFYVAAIAYTVVQIGAKVVDKMIDWKR 63
Cdd:pfam10746  2 DFNNEGIKAAPIAGTGGADVFARLFFGISLDEWFLIAAFAYTVLQIGAKFVDKMIDWKE 60
 
Name Accession Description Interval E-value
PHA00426 PHA00426
type II holin
 1-67 1.15e-34

type II holin


Pssm-ID: 164801  Cd Length: 67  Bit Score: 111.84  E-value: 1.15e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2128760774  1 MLSFDFNNEVVKAAPIVGTGVADGAARLFWGLSLNEWFYVAAIAYTVVQIGAKVVDKMIDWKRANKE 67
Cdd:PHA00426   1 MLELDFNNEVIKAAPIVGTAGADGAARLFFGLSLNEWFYVAAIAYTVVQIGAKVVDTIIDWKKANKE 67
Phage_holin_2_2 pfam10746
Phage holin T7 family, holin superfamily II; Holins are a diverse family of proteins that ...
 5-63 3.68e-23

Phage holin T7 family, holin superfamily II; Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.


Pssm-ID: 431471  Cd Length: 60  Bit Score: 82.82  E-value: 3.68e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2128760774  5 DFNNEVVKAAPIVGTGVADGAARLFWGLSLNEWFYVAAIAYTVVQIGAKVVDKMIDWKR 63
Cdd:pfam10746  2 DFNNEGIKAAPIAGTGGADVFARLFFGISLDEWFLIAAFAYTVLQIGAKFVDKMIDWKE 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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