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Conserved domains on  [gi|2151613320|ref|WP_228977807|]
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bacterial Ig-like domain-containing protein [Lactiplantibacillus plantarum]

Protein Classification

DUF5011/hyalin repeat domain-containing protein( domain architecture ID 12327)

DUF5011//hyalin repeat (HYR) domain-containing protein may contain a bacterial immunoglobulin-like domain; similar to Acholeplasma virus L2 uncharacterized 81.3 kDa protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5011 super family cl47259
Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like ...
 48-86 1.49e-07

Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like domain.


The actual alignment was detected with superfamily member pfam16403:

Pssm-ID: 435320 [Multi-domain]  Cd Length: 71  Bit Score: 45.23  E-value: 1.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2151613320  48 SKVKVTESVDPTKAGTYTITYSYTDGAGNVIKATDTVTI 86
Cdd:pfam16403  33 DKVKVTGSVDTSKPGTYTLTYTVTDSDGNSATVTRTVTV 71
 
Name Accession Description Interval E-value
DUF5011 pfam16403
Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like ...
 48-86 1.49e-07

Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like domain.


Pssm-ID: 435320 [Multi-domain]  Cd Length: 71  Bit Score: 45.23  E-value: 1.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2151613320  48 SKVKVTESVDPTKAGTYTITYSYTDGAGNVIKATDTVTI 86
Cdd:pfam16403  33 DKVKVTGSVDTSKPGTYTLTYTVTDSDGNSATVTRTVTV 71
 
Name Accession Description Interval E-value
DUF5011 pfam16403
Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like ...
 48-86 1.49e-07

Domain of unknown function (DUF5011); This entry represents a bacterial immunoglobulin-like domain.


Pssm-ID: 435320 [Multi-domain]  Cd Length: 71  Bit Score: 45.23  E-value: 1.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2151613320  48 SKVKVTESVDPTKAGTYTITYSYTDGAGNVIKATDTVTI 86
Cdd:pfam16403  33 DKVKVTGSVDTSKPGTYTLTYTVTDSDGNSATVTRTVTV 71
Big_3 pfam07523
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 27-70 1.90e-07

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 400072 [Multi-domain]  Cd Length: 67  Bit Score: 44.60  E-value: 1.90e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2151613320  27 KWQAEYNFVSATDEHGKA-LDFSKVKVTESVDPTKAGTYTITYSY 70
Cdd:pfam07523  12 SWDAEDNFVSATYKDGDAeVPFDDVEVSGTVDSTKAGEYTVTYTY 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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