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Conserved domains on  [gi|2151613359|ref|WP_228977830|]
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AraC family transcriptional regulator [Lactiplantibacillus plantarum]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 13466276)

AraC family transcriptional regulator controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
94-173 1.59e-27

helix_turn_helix, arabinose operon control protein;


:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 98.78  E-value: 1.59e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359   94 DLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
PRK10572 super family cl35928
arabinose operon transcriptional regulator AraC;
11-174 3.55e-15

arabinose operon transcriptional regulator AraC;


The actual alignment was detected with superfamily member PRK10572:

Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 71.16  E-value: 3.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  11 DDYRAEFMANARRIVAESQRPTVFGHALLIQAMviEQLcwLLRFLPENSVSNDYTelhqgnvsRDQQalVNAATYYLDVH 90
Cdd:PRK10572  130 EALQPEFSDLFGQIEQAGQSEGRYSELLAMNLL--ERL--LLRCMEAIPESLHPP--------MDPR--VREACQYISDH 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  91 YNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFG 170
Cdd:PRK10572  196 LASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTG 275


                  ....
gi 2151613359 171 AAPT 174
Cdd:PRK10572  276 ASPS 279
 
Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
94-173 1.59e-27

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 98.78  E-value: 1.59e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359   94 DLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
95-174 1.29e-22

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 90.99  E-value: 1.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  95 LTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:COG2207   169 LTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPS 248
HTH_18 pfam12833
Helix-turn-helix domain;
100-174 2.44e-21

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 82.64  E-value: 2.44e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2151613359 100 VAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQE-AITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDtGLSVAEIALALGFSDASHFSRAFRRLFGLTPS 76
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
11-174 3.55e-15

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 71.16  E-value: 3.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  11 DDYRAEFMANARRIVAESQRPTVFGHALLIQAMviEQLcwLLRFLPENSVSNDYTelhqgnvsRDQQalVNAATYYLDVH 90
Cdd:PRK10572  130 EALQPEFSDLFGQIEQAGQSEGRYSELLAMNLL--ERL--LLRCMEAIPESLHPP--------MDPR--VREACQYISDH 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  91 YNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFG 170
Cdd:PRK10572  196 LASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTG 275


                  ....
gi 2151613359 171 AAPT 174
Cdd:PRK10572  276 ASPS 279
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
25-173 7.54e-13

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 64.70  E-value: 7.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  25 VAESQRPtvfgHALLIQAMVIEQLCWLLRflpensvSNDYTELHQGNVSRDQQALVnaatyYLDVHYNEDLTLGTVAASL 104
Cdd:PRK13503  134 QEESNDL----EAIASREILFMQLLVLLR-------KSSLQENGENSDARLNQLLA-----WLEDHFAEEVNWEALADQF 197

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2151613359 105 HVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:PRK13503  198 SLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSP 266
 
Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
94-173 1.59e-27

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 98.78  E-value: 1.59e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359   94 DLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
95-174 1.29e-22

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 90.99  E-value: 1.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  95 LTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:COG2207   169 LTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPS 248
HTH_18 pfam12833
Helix-turn-helix domain;
100-174 2.44e-21

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 82.64  E-value: 2.44e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2151613359 100 VAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQE-AITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDtGLSVAEIALALGFSDASHFSRAFRRLFGLTPS 76
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 78-174 6.07e-21

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 87.14  E-value: 6.07e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  78 ALVNAATYYLDVHYNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQD 157
Cdd:COG4977   210 PRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGS 289

                          90
                  ....*....|....*..
gi 2151613359 158 PYYFSKVFKRYFGAAPT 174
Cdd:COG4977   290 ASHFRRAFRRRFGVSPS 306
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 73-174 8.10e-20

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 84.72  E-value: 8.10e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  73 SRDQQALVNAATYYLDVHYNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLmQEAITVRQVAHA 152
Cdd:COG2169    79 SPPRADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLL-QTGLSVTDAAYA 157

                          90       100
                  ....*....|....*....|..
gi 2151613359 153 VGYQDPYYFSKVFKRYFGAAPT 174
Cdd:COG2169   158 AGFGSLSRFYEAFKKLLGMTPS 179
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
11-174 3.55e-15

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 71.16  E-value: 3.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  11 DDYRAEFMANARRIVAESQRPTVFGHALLIQAMviEQLcwLLRFLPENSVSNDYTelhqgnvsRDQQalVNAATYYLDVH 90
Cdd:PRK10572  130 EALQPEFSDLFGQIEQAGQSEGRYSELLAMNLL--ERL--LLRCMEAIPESLHPP--------MDPR--VREACQYISDH 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  91 YNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFG 170
Cdd:PRK10572  196 LASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTG 275


                  ....
gi 2151613359 171 AAPT 174
Cdd:PRK10572  276 ASPS 279
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
25-173 7.54e-13

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 64.70  E-value: 7.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  25 VAESQRPtvfgHALLIQAMVIEQLCWLLRflpensvSNDYTELHQGNVSRDQQALVnaatyYLDVHYNEDLTLGTVAASL 104
Cdd:PRK13503  134 QEESNDL----EAIASREILFMQLLVLLR-------KSSLQENGENSDARLNQLLA-----WLEDHFAEEVNWEALADQF 197

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2151613359 105 HVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:PRK13503  198 SLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSP 266
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
76-174 1.95e-10

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 55.32  E-value: 1.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  76 QQALVNAATYYLDVHYNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGY 155
Cdd:PRK10219    3 HQKIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGY 82

                          90
                  ....*....|....*....
gi 2151613359 156 QDPYYFSKVFKRYFGAAPT 174
Cdd:PRK10219   83 VSQQTFSRVFRRQFDRTPS 101
PRK09978 PRK09978
DNA-binding transcriptional regulator GadX; Provisional
 94-174 1.93e-09

DNA-binding transcriptional regulator GadX; Provisional


Pssm-ID: 137624 [Multi-domain]  Cd Length: 274  Bit Score: 55.32  E-value: 1.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  94 DLTLGTVAASLHVSAAYLSRTFKAiQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:PRK09978  158 EWTLARIASELLMSPSLLKKKLRE-EETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTP 236


                  .
gi 2151613359 174 T 174
Cdd:PRK09978  237 T 237
PRK10371 PRK10371
transcriptional regulator MelR;
62-173 8.83e-09

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 53.28  E-value: 8.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  62 NDYTELHQGNVSRDQQALVNAATYYLDVHYNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQ 141
Cdd:PRK10371  175 NKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSD 254

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2151613359 142 EAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:PRK10371  255 TDKSILDIALTAGFRSSSRFYSTFGKYVGMSP 286
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 87-128 8.42e-08

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 46.38  E-value: 8.42e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2151613359  87 LDVHYNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLT 128
Cdd:pfam00165   1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
ftrA PRK09393
transcriptional activator FtrA; Provisional
 90-174 2.16e-06

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 46.50  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  90 HYNEDLTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYF 169
Cdd:PRK09393  230 HLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEESLRHHFRRRA 309


                  ....*
gi 2151613359 170 GAAPT 174
Cdd:PRK09393  310 ATSPA 314
PRK15186 PRK15186
AraC family transcriptional regulator; Provisional
 96-174 4.94e-06

AraC family transcriptional regulator; Provisional


Pssm-ID: 185108 [Multi-domain]  Cd Length: 291  Bit Score: 45.44  E-value: 4.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  96 TLGTVAASLHVSAAYLSRTFKaiQGETPIS--YLTRlRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:PRK15186  199 ALKDISDSLYMSCSTLKRKLK--QENTSFSevYLNA-RMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTP 275


                  .
gi 2151613359 174 T 174
Cdd:PRK15186  276 S 276
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
111-174 1.69e-05

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 43.74  E-value: 1.69e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2151613359 111 LSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:PRK13501  209 LKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPR 272
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 140-174 2.14e-05

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 39.83  E-value: 2.14e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2151613359 140 MQEAITVRQVAHAVGYqDPYYFSKVFKRYFGAAPT 174
Cdd:pfam00165   5 LSTNLTIADIADELGF-SRSYFSRLFKKYTGVTPS 38
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
107-174 3.03e-05

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 43.12  E-value: 3.03e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2151613359 107 SAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:PRK13502  205 SERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPS 272
PRK15044 PRK15044
transcriptional regulator SirC; Provisional
 100-173 6.46e-05

transcriptional regulator SirC; Provisional


Pssm-ID: 185004 [Multi-domain]  Cd Length: 295  Bit Score: 41.94  E-value: 6.46e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2151613359 100 VAASLHVSAAYLSRTFKAIQGETPISYLTRlRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAP 173
Cdd:PRK15044  214 VAGKLFMSVSSLKRKLAAEEVSFSKIYLDA-RMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITP 286
PRK09940 PRK09940
transcriptional regulator YdeO; Provisional
 97-178 2.93e-04

transcriptional regulator YdeO; Provisional


Pssm-ID: 182157 [Multi-domain]  Cd Length: 253  Bit Score: 40.07  E-value: 2.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  97 LGTVAASLHVSAAYLSRTFKaiQGETPIS-YLTRLRMQRAKQLLMQEAiTVRQVAHAVGYQDPYYFSKVFKRYFGAAPTL 175
Cdd:PRK09940  153 LKDICDCLYISESLLKKKLK--QEQTTFSqILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229


                  ...
gi 2151613359 176 IER 178
Cdd:PRK09940  230 VSK 232
PRK15185 PRK15185
transcriptional regulator HilD; Provisional
 97-174 4.04e-04

transcriptional regulator HilD; Provisional


Pssm-ID: 185107 [Multi-domain]  Cd Length: 309  Bit Score: 39.98  E-value: 4.04e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2151613359  97 LGTVAASLHVSAAYLSRTFkAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:PRK15185  225 LTDVADHIFMSTSTLKRKL-AEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPS 301
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 93-173 5.59e-04

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 39.24  E-value: 5.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2151613359  93 EDLTLGTVAASLHVSAAYLSRTFkAIQGETPISYLTRLRMQRAKQLL----MQEAITvrQVAHAVGYQDPYYFSKVFKRY 168
Cdd:PRK09685  213 EILRPEWIAGELGISVRSLYRLF-AEQGLVVAQYIRNRRLDRCADDLrpaaDDEKIT--SIAYKWGFSDSSHFSTAFKQR 289


                  ....*
gi 2151613359 169 FGAAP 173
Cdd:PRK09685  290 FGVSP 294
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
107-174 7.11e-04

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 38.93  E-value: 7.11e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2151613359 107 SAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQEAITVRQVAHAVGYQDPYYFSKVFKRYFGAAPT 174
Cdd:PRK13500  235 SERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPS 302
PRK15435 PRK15435
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;
95-160 8.03e-03

bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;


Pssm-ID: 185333 [Multi-domain]  Cd Length: 353  Bit Score: 35.92  E-value: 8.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2151613359  95 LTLGTVAASLHVSAAYLSRTFKAIQGETPISYLTRLRMQRAKQLLMQeAITVRQVAHAVGYQD--PYY 160
Cdd:PRK15435  100 VTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLREALAK-GESVTTSILNAGFPDssSYY 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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