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Conserved domains on  [gi|2263687947|ref|WP_253093053|]
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Arm DNA-binding domain-containing protein, partial [Alistipes shahii]

Protein Classification

Arm DNA-binding domain-containing protein( domain architecture ID 13879600)

Arm DNA-binding domain-containing protein similar to the Arm DNA-binding domain of a tyrosine based site-specific recombinase (integrase)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arm-DNA-bind_5 pfam17293
Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various ...
 18-105 1.87e-05

Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases.


:

Pssm-ID: 465401  Cd Length: 87  Bit Score: 40.44  E-value: 1.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2263687947  18 FYINRTKVRKDGTCKLLCKVSIDAKSAPININAFVDPSLWNPETKRANGRSENARTVNLAIEKLTEKITGHYRHIRKSlG 97
Cdd:pfam17293   1 VYLRKKKLNKNGEAPLYLRIYKNGKRKYESLGLYITPEPWDKKKQKVKRKHPNALELNEQIDQERSKLEDIILELEQK-G 79


                  ....*...
gi 2263687947  98 FVTAELVK 105
Cdd:pfam17293  80 KLSAELLK 87
 
Name Accession Description Interval E-value
Arm-DNA-bind_5 pfam17293
Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various ...
 18-105 1.87e-05

Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases.


Pssm-ID: 465401  Cd Length: 87  Bit Score: 40.44  E-value: 1.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2263687947  18 FYINRTKVRKDGTCKLLCKVSIDAKSAPININAFVDPSLWNPETKRANGRSENARTVNLAIEKLTEKITGHYRHIRKSlG 97
Cdd:pfam17293   1 VYLRKKKLNKNGEAPLYLRIYKNGKRKYESLGLYITPEPWDKKKQKVKRKHPNALELNEQIDQERSKLEDIILELEQK-G 79


                  ....*...
gi 2263687947  98 FVTAELVK 105
Cdd:pfam17293  80 KLSAELLK 87
 
Name Accession Description Interval E-value
Arm-DNA-bind_5 pfam17293
Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various ...
 18-105 1.87e-05

Arm DNA-binding domain; This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases.


Pssm-ID: 465401  Cd Length: 87  Bit Score: 40.44  E-value: 1.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2263687947  18 FYINRTKVRKDGTCKLLCKVSIDAKSAPININAFVDPSLWNPETKRANGRSENARTVNLAIEKLTEKITGHYRHIRKSlG 97
Cdd:pfam17293   1 VYLRKKKLNKNGEAPLYLRIYKNGKRKYESLGLYITPEPWDKKKQKVKRKHPNALELNEQIDQERSKLEDIILELEQK-G 79


                  ....*...
gi 2263687947  98 FVTAELVK 105
Cdd:pfam17293  80 KLSAELLK 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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