![](files/infoQ.gif)
AraC family transcriptional regulator [Alistipes finegoldii]
helix-turn-helix domain-containing protein( domain architecture ID 11454391)
helix-turn-helix (HTH) domain-containing protein with an AraC family HTH domain, binds DNA and may function as a transcriptional regulator
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | ||
AraC | COG2207 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
1-52 | 9.71e-12 | ||
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; : Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 56.71 E-value: 9.71e-12
|
||||||
Name | Accession | Description | Interval | E-value | ||
AraC | COG2207 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
1-52 | 9.71e-12 | ||
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 56.71 E-value: 9.71e-12
|
||||||
HTH_ARAC | smart00342 | helix_turn_helix, arabinose operon control protein; |
1-45 | 3.73e-10 | ||
helix_turn_helix, arabinose operon control protein; Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 49.86 E-value: 3.73e-10
|
||||||
HTH_18 | pfam12833 | Helix-turn-helix domain; |
1-47 | 1.26e-09 | ||
Helix-turn-helix domain; Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 48.35 E-value: 1.26e-09
|
||||||
adjacent_YSIRK | TIGR04094 | YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ... |
1-45 | 8.70e-08 | ||
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain. Pssm-ID: 274977 [Multi-domain] Cd Length: 383 Bit Score: 45.82 E-value: 8.70e-08
|
||||||
PRK09685 | PRK09685 | DNA-binding transcriptional activator FeaR; Provisional |
10-49 | 2.00e-06 | ||
DNA-binding transcriptional activator FeaR; Provisional Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 41.94 E-value: 2.00e-06
|
||||||
Name | Accession | Description | Interval | E-value | ||
AraC | COG2207 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
1-52 | 9.71e-12 | ||
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 56.71 E-value: 9.71e-12
|
||||||
GlxA | COG4977 | Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
6-53 | 2.08e-10 | ||
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 53.24 E-value: 2.08e-10
|
||||||
HTH_ARAC | smart00342 | helix_turn_helix, arabinose operon control protein; |
1-45 | 3.73e-10 | ||
helix_turn_helix, arabinose operon control protein; Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 49.86 E-value: 3.73e-10
|
||||||
HTH_18 | pfam12833 | Helix-turn-helix domain; |
1-47 | 1.26e-09 | ||
Helix-turn-helix domain; Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 48.35 E-value: 1.26e-09
|
||||||
adjacent_YSIRK | TIGR04094 | YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ... |
1-45 | 8.70e-08 | ||
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain. Pssm-ID: 274977 [Multi-domain] Cd Length: 383 Bit Score: 45.82 E-value: 8.70e-08
|
||||||
AdaA | COG2169 | Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
1-53 | 1.07e-07 | ||
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair]; Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 45.81 E-value: 1.07e-07
|
||||||
PRK09685 | PRK09685 | DNA-binding transcriptional activator FeaR; Provisional |
10-49 | 2.00e-06 | ||
DNA-binding transcriptional activator FeaR; Provisional Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 41.94 E-value: 2.00e-06
|
||||||
HTH_AraC | pfam00165 | Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
8-45 | 2.04e-05 | ||
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added. Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 36.75 E-value: 2.04e-05
|
||||||
ftrA | PRK09393 | transcriptional activator FtrA; Provisional |
10-49 | 1.49e-04 | ||
transcriptional activator FtrA; Provisional Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 36.87 E-value: 1.49e-04
|
||||||
PRK10572 | PRK10572 | arabinose operon transcriptional regulator AraC; |
11-51 | 2.00e-04 | ||
arabinose operon transcriptional regulator AraC; Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 36.49 E-value: 2.00e-04
|
||||||
PRK09978 | PRK09978 | DNA-binding transcriptional regulator GadX; Provisional |
1-49 | 2.60e-04 | ||
DNA-binding transcriptional regulator GadX; Provisional Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 36.06 E-value: 2.60e-04
|
||||||
PRK13501 | PRK13501 | HTH-type transcriptional activator RhaR; |
14-48 | 3.89e-04 | ||
HTH-type transcriptional activator RhaR; Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 35.65 E-value: 3.89e-04
|
||||||
AraC | COG2207 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
6-47 | 3.04e-03 | ||
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 33.21 E-value: 3.04e-03
|
||||||
PRK10296 | PRK10296 | DNA-binding transcriptional regulator ChbR; Provisional |
6-49 | 4.83e-03 | ||
DNA-binding transcriptional regulator ChbR; Provisional Pssm-ID: 182362 [Multi-domain] Cd Length: 278 Bit Score: 32.42 E-value: 4.83e-03
|
||||||
Blast search parameters | ||||
|