|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
55-953 |
5.72e-165 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 504.18 E-value: 5.72e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 55 IVVTGFRAALATSVATKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGRAQVISVRGLSPDFAATLLNGRE 134
Cdd:TIGR01782 4 VQVTGQRASLEKAIDAKRDADSVVDVISAEDIGKLPDVNVAEALQRVPGVSIERDQGEGRYVSVRGLGPSYNRTTLNGRT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 135 QVTTG-DNRGVEFDQYPSELMGAVDVYKTPYAGLIGQGLSGTINLRTIRPLDHGKRVLAVNLRGEIVSpgklNAGTSDKG 213
Cdd:TIGR01782 84 IASTDsGGRAFSLDLLPSELVSGVEVYKTPTADMDEGGIGGTVDLRTRSPFDYDGRTLSGSAQGGYND----LAGKDKPG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 214 WRASATYVDQFANDTLGVMIGVAHLTSPTQFERFNAWGYprfetnndnygirntqGTADTADDTftprpeyaaANGALII 293
Cdd:TIGR01782 160 PRGAASYSWTFGDGQFGVLLSASYQKRDFAEDNVETENW----------------GTYTSADGG---------AQGLYFP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 294 GGSKPYVQSDELERTGAMGTLQWRPDPALNITLDGYYSRFRDEQTLRGIEFPLYWGNAILNPG-YTVTDGIITDGTWRNV 372
Cdd:TIGR01782 215 RGVRYRSYRNDRERKGVNGSLQWRPSDALELYLDTLYSKYDDDETRQQIEFRTLNGGSTVITSnQTATSGALVQGTVANL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 373 KGVVRNDANLREADLYSAGLNVTYESEGWKLLGDLSYSRVDREDKVLETYAGTSRGAGngpydlLGFSANGDGTYTfdPT 452
Cdd:TIGR01782 295 QILVEARYNEEKETTTSLTLGGEWTGDRWTLDGDLGYSKATRDRPDRVTRFFTAPTPG------YDFDYRGGPTLT--LG 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 453 LDYANAGVIQLTSPQGWGADNTPggqdgfLNNPKTTDELIAFRAAVQRElGPnAGKIELGANYTKRDKTLDLARFYLGLK 532
Cdd:TIGR01782 367 TPADGDDASNYTNPANGELRRTQ------ISYQKAEDSEDAAQLDATFD-GP-FTSLKFGVRYRRRDKTNRGSRYRRSII 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 533 ANAAAPGHDVSVPIPSDQLLDPTKLDFLGIPGMVSYDPLGLAYSGIYDFNAATDANLYAFG-WSVTEKVLTGYArydiQA 611
Cdd:TIGR01782 439 GATGASGLAGVPSDLAGAGLDGGLGGPLTGWDPADLDAFLNAARGDAAGGGTYTYASTAPNtYTVTEDTTAAYA----MA 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 612 EMSDGASLAGDVGVQVVRVDQSSNGLA---ASGSPVAVITDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPRM 688
Cdd:TIGR01782 515 NFDTGLRLRGNVGVRYERTDQTSDGWQsqpAANGTGSVLVPVSADRDYTDVLPSLNLAYDLTDDLVLRFAASKTITRPDF 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 689 DQMRASINFSYDASRagntnvnlSPWGGSGGNPRLRPWVADSVDVSVEKYFGPDSYVSLAGYYKYLETYIYQQQ--LLYD 766
Cdd:TIGR01782 595 GDLAANTSLSDDGTG--------GTVTVSGGNPDLKPYESDNLDLSLEWYFGPGGLLSAAVFYKDIKNFIVTTTstETND 666
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 767 FSGFPVTSGPEpairqgVVSIFQNGQGGHLYGAEAAFALSFATLTSALDGFGVLGSVSYTESGITPDPGNP---TQPLPG 843
Cdd:TIGR01782 667 GGGGLVVAGVL------VSRPVNGGKAGKIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEADPSVDGVqrrKLPLPG 740
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 844 LSKWVASGTVYFEKSGFSARASVRHRSGFLAELSGVGTDRIQRLAKAETIVDAQIGYEFQSgaleGLGIQLQAQNLTDEP 923
Cdd:TIGR01782 741 LSKNTANATLYYEKGGFSARLSYNYRSDYLLDVGGSNINRLDRYVDPRGQLDLSASYQVSD----HLSLGLQASNLTNEP 816
|
890 900 910
....*....|....*....|....*....|
gi 2564896700 924 FSTYDpADDRLTIDYQRYGTRYLLGASYRF 953
Cdd:TIGR01782 817 SRWYT-GGKQRPREYVETGRTYMLGLRYKF 845
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
77-953 |
1.67e-63 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 226.95 E-value: 1.67e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 77 IVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLD-GRAQVISVRGLSPDFAATLLNGREQVTTGDNRGVEFDQYPSELMG 155
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGgGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRGVDLNTIPPELIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 156 AVDVYKTPYAGLIGQG-LSGTINLRTIRPldhgKRVLAVNLRGEIVSPGklnagtsdkgwrasatyVDQFANDTLGVMIG 234
Cdd:cd01347 81 RVEVLKGPSSALYGSGaIGGVVNIITKRP----TDEFGGSVTAGYGSDN-----------------SGSSGGGGFDVSGA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 235 VAHltsptqFERFNAWGYPrFETNNDNYGIRNTQgtadtADDTFTprpeyaaangaliiggskpyvqsdelERTGAMGTL 314
Cdd:cd01347 140 LAD------DGAFGARLYG-AYRDGDGTIDGDGQ-----ADDSDE--------------------------ERYNVAGKL 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 315 QWRPDPALNITLDGYYSRFRDEQTLRGIEFPLYWGNAilnpgytvtdgiiTDGTWRNVKGVVRNDANLREADLYSAGLNV 394
Cdd:cd01347 182 DWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSL-------------GGGPSSNTNGDRDWDYRDRYRKRASLGLEH 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 395 TYESEGWKLLGDLSYSRvDREDKVLETYAGTSRGAGNGPYDLLGFSANGDGTYTFDptldyanagvIQLTSPQGWGadnt 474
Cdd:cd01347 249 DLNDTGWTLRANLSYSY-TDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFD----------AGLNAPFGTG---- 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 475 pggqdgflnnpkttdeliafraavqrelgPNAGKIELGANYTKRDKTLDLARFYLglkanaaapghdvsvpipsdqlldp 554
Cdd:cd01347 314 -----------------------------PVAHTLTLGVEYRREELDEKQTALYA------------------------- 339
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 555 tkldflgipgmvsydplglaysgiydfnaatdanlyafgwsvtekvltgyarydiQAEMSDGASLAGDVGVQVVRVDQSS 634
Cdd:cd01347 340 -------------------------------------------------------QDTIELTDDLTLTLGLRYDHYDQDS 364
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 635 NGLAAsgspvaviTDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPRMDQMRASINfsydasragntnvnlSPW 714
Cdd:cd01347 365 KDTIA--------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGS---------------HGG 421
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 715 GGSGGNPRLRPWVADSVDVSVEKYFGPDSYVSLAGYYKYLETYIYQQQLLYDFsgfpvtsgpepairqGVVSIFQNGQGG 794
Cdd:cd01347 422 TAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGL---------------GLVTVYVNGGKA 486
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 795 HLYGAEAAFALSFAtltsalDGFGVLGSVSYTESGITPDPGNPT-QPLPGLSKWVASGTVYFE--KSGFSARASVRHRSG 871
Cdd:cd01347 487 RIRGVELEASYDLT------DGLGLTGSYTYTDTEVKRTDGATTgNRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGK 560
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 872 FLAELSGVGTDRIQrlaKAETIVDAQIGYEFQsgalEGLGIQLQAQNLTDEPFSTYDPADDRLTIDYQRYGTRYLLGASY 951
Cdd:cd01347 561 QYADTANGNNTVKV---PGYTLVDLSASYQFT----KNLTLRLGVNNLFDKDYYTSLSVRGSGLYGYYGPGRTYYLSVSY 633
|
..
gi 2564896700 952 RF 953
Cdd:cd01347 634 KF 635
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
53-922 |
6.45e-28 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 120.32 E-value: 6.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 53 EDIVVTGFRaalatSVATKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGRAQVISVRGLSPDFA--ATLL 130
Cdd:COG1629 2 EEVVVTATR-----TDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFGGGGNrvLVLV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 131 NGREQvTTGDNRGVEFDQYPSELMGAVDVYKTPYAGLIGQG-LSGTINLRTIRPLDhgkrvlavnlrgeivspgklnagt 209
Cdd:COG1629 77 DGVPL-NDPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGaLGGVINIVTKKPKD------------------------ 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 210 sDKGWRASATYvdqfandtlgvmigvahltsptqferfnawgyprfetnnDNYGIRNTQGTADTADDTFtprpeYAAANG 289
Cdd:COG1629 132 -GKGGEVSASY---------------------------------------GSYGTYRASLSLSGGNGKL-----AYRLSA 166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 290 ALIIGGSkpYVQSDELERTGAMGTLQWRPDPALNITLDGYYSRFRDEqtlrgiefplywgnailNPGYTVTDGIITDGTW 369
Cdd:COG1629 167 SYRDSDG--YRDNSDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQD-----------------SPGYLTLAALRPRGAM 227
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 370 RNVKGVVRNDANLREADLYSAGLNVTYESEGWKLLGDLSYSRVDREDKVLETYAGTSRGAGNGpydllgfSANGDGTYTF 449
Cdd:COG1629 228 DDGTNPYSNDTDDNTRDRYSLSLEYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQ-------TDFDNRTYGL 300
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 450 DptldyanagvIQLTSPQGWGADNTpggqdgflnnpkttdeliafraavqrelgpnagkIELGANYTKRDktldlarfyl 529
Cdd:COG1629 301 E----------LRLTYDLGFGGKHT----------------------------------LLVGLDYQRQD---------- 326
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 530 glkanaaapghdvsvpipsdqlldptkLDFLGIPGMVSYDPLGLAYSGIYDFNAATDANLYAFG-WSVTEKV-LTGYARY 607
Cdd:COG1629 327 ---------------------------LDGSGYPLDLGSGSLPTLTSGADDDGTTTSLALYAQDtYKLTDKLtLTAGLRY 379
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 608 DiQAEMSDGASLAGDvgvqvvrvdqssnglaasgspvaviTDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPR 687
Cdd:COG1629 380 D-YVSYDVDDTVTGT-------------------------DSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPT 433
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 688 MDQMRASINFSYdasragntnvnlspwggSGGNPRLRPWVADSVDVSVEKYFGPDSY-VSLAGYYKYLETYIYQQQLLYD 766
Cdd:COG1629 434 FGELYANGTDPY-----------------SVGNPDLKPETSTNYELGLRYRLLDGRLsLSLALFYSDVDNEILSVPLPND 496
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 767 FsgfpvtsgpepairqGVVSIFQNGQGGHLYGAEAAFALSFAtltsalDGFGVLGSVSYTESGITPDPGNPT----QPLP 842
Cdd:COG1629 497 S---------------GFSTYYTNAGKARSYGVELELSYQLT------PGLSLNASYSYTDAKFDDDTDGSAdldgNRLP 555
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 843 GLSKWVASGTV-YFEKSGFSARASVRHRSGFLAELSGVgtdriQRLAKAETIVDAQIGYEFQsgalEGLGIQLQAQNLTD 921
Cdd:COG1629 556 GVPPLTANLGLtYEFPGGWSLGLGVRYVGDRYLDDANT-----QGAPGGYTLVDLGAGYRFG----DNLTLSLGVDNLFD 626
|
.
gi 2564896700 922 E 922
Cdd:COG1629 627 K 627
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
431-952 |
8.82e-23 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 102.93 E-value: 8.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 431 NGPYDLLGFSANGDGTYTFDPTLDYANAGviqLTSPQGWGADNTPGGQDGFLNNPKTTDELIAFRAAVQRELGPN---AG 507
Cdd:pfam00593 3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLG---LTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGlswLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 508 KIELGANYTKRDKTLDLARFYLGLKANAAAPGHDVSVPIPSDQLLDPTKLDFLGIPGMvSYDPLGLAYSGIYDFNAATDA 587
Cdd:pfam00593 80 TLRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGV-ELRTAGLDYRRLDDDAYDPYD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 588 NLYAFGWSVTEKVLTGYARYdIQAEMSDGASLAGDVGVQVVRVDQSSNGLAASGSPVavitdvsdQVSYTHLLPSMNLVA 667
Cdd:pfam00593 159 PANPSSSSYSDTTTDSYGLY-LQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNF--------SRSYSAFSPRLGLVY 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 668 RLNGGWSLRLGVARQLARPRMDQMRAsinfsydasragnTNVNLSPWGGSGGNPRLRPWVADSVDVSVeKYFGPDSYVSL 747
Cdd:pfam00593 230 KPTDNLSLYASYSRGFRAPSLGELYG-------------SGSGGGGGAVAGGNPDLKPETSDNYELGL-KYDDGRLSLSL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 748 AGYYKYLETYIYQQqllydfsgfpvtsgPEPAIRQGVVSIFQNGQGGHLYGAEAAFALSFatltsaLDGFGVLGSVSYTE 827
Cdd:pfam00593 296 ALFYIDIKNLITSD--------------PDGPGLGGTVYTYTNVGKARIRGVELELSGRL------WGLGLSGGGYTYTD 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 828 SGITPDPGNPTQPLPGLSKWVAS-GTVY-FEKSGFSARASVRH-RSGFLAELSGVGTDRIqrlaKAETIVDAQIGYEFQs 904
Cdd:pfam00593 356 ADDDADADDTGNPLPNVPRHTANlGLTYdFPLGGWGARLGARYvGSGERRYGDAANTFKT----PGYTLVDLSAGYRLN- 430
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 2564896700 905 galEGLGIQLQAQNLTDEPFSTYDPADDRLTIDYQRYGTRYLLGASYR 952
Cdd:pfam00593 431 ---KNLTLRLGVNNLFDKYYKRYYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
42-180 |
1.17e-03 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 42.56 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 42 ADPVQADDTAQEDIVVTGfrAALATSVATKRQSnqiVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGRAQVISVRGL 121
Cdd:PRK10064 20 AWPVLAVDDDGETMVVTA--SAVEQNLKDAPAS---ISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGL 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2564896700 122 SPDFAATLLNG-REQVTTGDNRGVEFDQ--YPSELMGAVDVYKTPYAGLIGQ-GLSGTINLRT 180
Cdd:PRK10064 95 DSSYTLILIDGkRVNSRNAVFRHNDFDLnwIPVDAIERIEVVRGPMSSLYGSdALGGVVNIIT 157
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
55-953 |
5.72e-165 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 504.18 E-value: 5.72e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 55 IVVTGFRAALATSVATKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGRAQVISVRGLSPDFAATLLNGRE 134
Cdd:TIGR01782 4 VQVTGQRASLEKAIDAKRDADSVVDVISAEDIGKLPDVNVAEALQRVPGVSIERDQGEGRYVSVRGLGPSYNRTTLNGRT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 135 QVTTG-DNRGVEFDQYPSELMGAVDVYKTPYAGLIGQGLSGTINLRTIRPLDHGKRVLAVNLRGEIVSpgklNAGTSDKG 213
Cdd:TIGR01782 84 IASTDsGGRAFSLDLLPSELVSGVEVYKTPTADMDEGGIGGTVDLRTRSPFDYDGRTLSGSAQGGYND----LAGKDKPG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 214 WRASATYVDQFANDTLGVMIGVAHLTSPTQFERFNAWGYprfetnndnygirntqGTADTADDTftprpeyaaANGALII 293
Cdd:TIGR01782 160 PRGAASYSWTFGDGQFGVLLSASYQKRDFAEDNVETENW----------------GTYTSADGG---------AQGLYFP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 294 GGSKPYVQSDELERTGAMGTLQWRPDPALNITLDGYYSRFRDEQTLRGIEFPLYWGNAILNPG-YTVTDGIITDGTWRNV 372
Cdd:TIGR01782 215 RGVRYRSYRNDRERKGVNGSLQWRPSDALELYLDTLYSKYDDDETRQQIEFRTLNGGSTVITSnQTATSGALVQGTVANL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 373 KGVVRNDANLREADLYSAGLNVTYESEGWKLLGDLSYSRVDREDKVLETYAGTSRGAGngpydlLGFSANGDGTYTfdPT 452
Cdd:TIGR01782 295 QILVEARYNEEKETTTSLTLGGEWTGDRWTLDGDLGYSKATRDRPDRVTRFFTAPTPG------YDFDYRGGPTLT--LG 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 453 LDYANAGVIQLTSPQGWGADNTPggqdgfLNNPKTTDELIAFRAAVQRElGPnAGKIELGANYTKRDKTLDLARFYLGLK 532
Cdd:TIGR01782 367 TPADGDDASNYTNPANGELRRTQ------ISYQKAEDSEDAAQLDATFD-GP-FTSLKFGVRYRRRDKTNRGSRYRRSII 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 533 ANAAAPGHDVSVPIPSDQLLDPTKLDFLGIPGMVSYDPLGLAYSGIYDFNAATDANLYAFG-WSVTEKVLTGYArydiQA 611
Cdd:TIGR01782 439 GATGASGLAGVPSDLAGAGLDGGLGGPLTGWDPADLDAFLNAARGDAAGGGTYTYASTAPNtYTVTEDTTAAYA----MA 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 612 EMSDGASLAGDVGVQVVRVDQSSNGLA---ASGSPVAVITDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPRM 688
Cdd:TIGR01782 515 NFDTGLRLRGNVGVRYERTDQTSDGWQsqpAANGTGSVLVPVSADRDYTDVLPSLNLAYDLTDDLVLRFAASKTITRPDF 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 689 DQMRASINFSYDASRagntnvnlSPWGGSGGNPRLRPWVADSVDVSVEKYFGPDSYVSLAGYYKYLETYIYQQQ--LLYD 766
Cdd:TIGR01782 595 GDLAANTSLSDDGTG--------GTVTVSGGNPDLKPYESDNLDLSLEWYFGPGGLLSAAVFYKDIKNFIVTTTstETND 666
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 767 FSGFPVTSGPEpairqgVVSIFQNGQGGHLYGAEAAFALSFATLTSALDGFGVLGSVSYTESGITPDPGNP---TQPLPG 843
Cdd:TIGR01782 667 GGGGLVVAGVL------VSRPVNGGKAGKIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEADPSVDGVqrrKLPLPG 740
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 844 LSKWVASGTVYFEKSGFSARASVRHRSGFLAELSGVGTDRIQRLAKAETIVDAQIGYEFQSgaleGLGIQLQAQNLTDEP 923
Cdd:TIGR01782 741 LSKNTANATLYYEKGGFSARLSYNYRSDYLLDVGGSNINRLDRYVDPRGQLDLSASYQVSD----HLSLGLQASNLTNEP 816
|
890 900 910
....*....|....*....|....*....|
gi 2564896700 924 FSTYDpADDRLTIDYQRYGTRYLLGASYRF 953
Cdd:TIGR01782 817 SRWYT-GGKQRPREYVETGRTYMLGLRYKF 845
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
77-953 |
1.67e-63 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 226.95 E-value: 1.67e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 77 IVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLD-GRAQVISVRGLSPDFAATLLNGREQVTTGDNRGVEFDQYPSELMG 155
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGGgGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRGVDLNTIPPELIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 156 AVDVYKTPYAGLIGQG-LSGTINLRTIRPldhgKRVLAVNLRGEIVSPGklnagtsdkgwrasatyVDQFANDTLGVMIG 234
Cdd:cd01347 81 RVEVLKGPSSALYGSGaIGGVVNIITKRP----TDEFGGSVTAGYGSDN-----------------SGSSGGGGFDVSGA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 235 VAHltsptqFERFNAWGYPrFETNNDNYGIRNTQgtadtADDTFTprpeyaaangaliiggskpyvqsdelERTGAMGTL 314
Cdd:cd01347 140 LAD------DGAFGARLYG-AYRDGDGTIDGDGQ-----ADDSDE--------------------------ERYNVAGKL 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 315 QWRPDPALNITLDGYYSRFRDEQTLRGIEFPLYWGNAilnpgytvtdgiiTDGTWRNVKGVVRNDANLREADLYSAGLNV 394
Cdd:cd01347 182 DWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSL-------------GGGPSSNTNGDRDWDYRDRYRKRASLGLEH 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 395 TYESEGWKLLGDLSYSRvDREDKVLETYAGTSRGAGNGPYDLLGFSANGDGTYTFDptldyanagvIQLTSPQGWGadnt 474
Cdd:cd01347 249 DLNDTGWTLRANLSYSY-TDNDGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFD----------AGLNAPFGTG---- 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 475 pggqdgflnnpkttdeliafraavqrelgPNAGKIELGANYTKRDKTLDLARFYLglkanaaapghdvsvpipsdqlldp 554
Cdd:cd01347 314 -----------------------------PVAHTLTLGVEYRREELDEKQTALYA------------------------- 339
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 555 tkldflgipgmvsydplglaysgiydfnaatdanlyafgwsvtekvltgyarydiQAEMSDGASLAGDVGVQVVRVDQSS 634
Cdd:cd01347 340 -------------------------------------------------------QDTIELTDDLTLTLGLRYDHYDQDS 364
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 635 NGLAAsgspvaviTDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPRMDQMRASINfsydasragntnvnlSPW 714
Cdd:cd01347 365 KDTIA--------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGS---------------HGG 421
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 715 GGSGGNPRLRPWVADSVDVSVEKYFGPDSYVSLAGYYKYLETYIYQQQLLYDFsgfpvtsgpepairqGVVSIFQNGQGG 794
Cdd:cd01347 422 TAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGL---------------GLVTVYVNGGKA 486
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 795 HLYGAEAAFALSFAtltsalDGFGVLGSVSYTESGITPDPGNPT-QPLPGLSKWVASGTVYFE--KSGFSARASVRHRSG 871
Cdd:cd01347 487 RIRGVELEASYDLT------DGLGLTGSYTYTDTEVKRTDGATTgNRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGK 560
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 872 FLAELSGVGTDRIQrlaKAETIVDAQIGYEFQsgalEGLGIQLQAQNLTDEPFSTYDPADDRLTIDYQRYGTRYLLGASY 951
Cdd:cd01347 561 QYADTANGNNTVKV---PGYTLVDLSASYQFT----KNLTLRLGVNNLFDKDYYTSLSVRGSGLYGYYGPGRTYYLSVSY 633
|
..
gi 2564896700 952 RF 953
Cdd:cd01347 634 KF 635
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
53-922 |
6.45e-28 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 120.32 E-value: 6.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 53 EDIVVTGFRaalatSVATKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGRAQVISVRGLSPDFA--ATLL 130
Cdd:COG1629 2 EEVVVTATR-----TDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFGGGGNrvLVLV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 131 NGREQvTTGDNRGVEFDQYPSELMGAVDVYKTPYAGLIGQG-LSGTINLRTIRPLDhgkrvlavnlrgeivspgklnagt 209
Cdd:COG1629 77 DGVPL-NDPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGaLGGVINIVTKKPKD------------------------ 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 210 sDKGWRASATYvdqfandtlgvmigvahltsptqferfnawgyprfetnnDNYGIRNTQGTADTADDTFtprpeYAAANG 289
Cdd:COG1629 132 -GKGGEVSASY---------------------------------------GSYGTYRASLSLSGGNGKL-----AYRLSA 166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 290 ALIIGGSkpYVQSDELERTGAMGTLQWRPDPALNITLDGYYSRFRDEqtlrgiefplywgnailNPGYTVTDGIITDGTW 369
Cdd:COG1629 167 SYRDSDG--YRDNSDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQD-----------------SPGYLTLAALRPRGAM 227
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 370 RNVKGVVRNDANLREADLYSAGLNVTYESEGWKLLGDLSYSRVDREDKVLETYAGTSRGAGNGpydllgfSANGDGTYTF 449
Cdd:COG1629 228 DDGTNPYSNDTDDNTRDRYSLSLEYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLEQ-------TDFDNRTYGL 300
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 450 DptldyanagvIQLTSPQGWGADNTpggqdgflnnpkttdeliafraavqrelgpnagkIELGANYTKRDktldlarfyl 529
Cdd:COG1629 301 E----------LRLTYDLGFGGKHT----------------------------------LLVGLDYQRQD---------- 326
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 530 glkanaaapghdvsvpipsdqlldptkLDFLGIPGMVSYDPLGLAYSGIYDFNAATDANLYAFG-WSVTEKV-LTGYARY 607
Cdd:COG1629 327 ---------------------------LDGSGYPLDLGSGSLPTLTSGADDDGTTTSLALYAQDtYKLTDKLtLTAGLRY 379
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 608 DiQAEMSDGASLAGDvgvqvvrvdqssnglaasgspvaviTDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPR 687
Cdd:COG1629 380 D-YVSYDVDDTVTGT-------------------------DSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPT 433
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 688 MDQMRASINFSYdasragntnvnlspwggSGGNPRLRPWVADSVDVSVEKYFGPDSY-VSLAGYYKYLETYIYQQQLLYD 766
Cdd:COG1629 434 FGELYANGTDPY-----------------SVGNPDLKPETSTNYELGLRYRLLDGRLsLSLALFYSDVDNEILSVPLPND 496
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 767 FsgfpvtsgpepairqGVVSIFQNGQGGHLYGAEAAFALSFAtltsalDGFGVLGSVSYTESGITPDPGNPT----QPLP 842
Cdd:COG1629 497 S---------------GFSTYYTNAGKARSYGVELELSYQLT------PGLSLNASYSYTDAKFDDDTDGSAdldgNRLP 555
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 843 GLSKWVASGTV-YFEKSGFSARASVRHRSGFLAELSGVgtdriQRLAKAETIVDAQIGYEFQsgalEGLGIQLQAQNLTD 921
Cdd:COG1629 556 GVPPLTANLGLtYEFPGGWSLGLGVRYVGDRYLDDANT-----QGAPGGYTLVDLGAGYRFG----DNLTLSLGVDNLFD 626
|
.
gi 2564896700 922 E 922
Cdd:COG1629 627 K 627
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
39-902 |
4.17e-27 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 117.65 E-value: 4.17e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 39 APTADPVQADDTAQEDIVVTGFRAAlatsvATKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGR--AQVI 116
Cdd:COG4771 14 AQAADALAEDATELEEVVVTATRTE-----QSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTRSGGRggSSGI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 117 SVRGLSPDFAATLLNGREQVTTGDNRGVEFDQYPSELMGAVDVYKTPYAGLIGQG-LSGTINLRTIRPLDhgkrvlavNL 195
Cdd:COG4771 89 SIRGLGGDRVLVLIDGVPVNNPALGGGGDLSYIPPDDIERIEVIRGPASALYGSDaIGGVINIITKKPTD--------EL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 196 RGEIvspgKLNAGTSDKG-WRASATYvdQFANDTLGVMIgvahltsptqferfnawgyprfetnndNYGIRNTQGTADTA 274
Cdd:COG4771 161 EGSV----SLGYGSNGNGtYSGSLSL--GGPGDKLSFLL---------------------------SGSYRDRDGYLDYR 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 275 DDTFTPRPEYaaangaliiggskpyvqsdelERTGAMGTLQWRPDPALNITLDGYYSRFRDEqtlrgiefplywgnailn 354
Cdd:COG4771 208 NGGFVGNSGY---------------------ERYNLNAKLGYRLSDNHRLSLSGGYSRQDRD------------------ 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 355 pgytvtDGIITDGTWRNVKGVVRNDANLREADLYSAGLNVTYeseGWKLLGDLSYSRVDREDkvlETYAGTSRGAGNGPY 434
Cdd:COG4771 249 ------GGPPTLGDTEISSDNAGDRDTTTDRGNYSLRYNGDL---GDNLDLSLYYSRTDRDS---TNGSLGGSTGSFSDS 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 435 DLLGFSANGDGTYTFDPTLdyanagviqltspqgwgadntpggqdgflnnpkttdeliafraavqrelgpnagKIELGAN 514
Cdd:COG4771 317 DDTTYGLELDLTYPLGGNH------------------------------------------------------TLTLGAE 342
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 515 YTKRDktldlarfylglkanaaapghdvsvpipsdqlldptkldflgipgmvsydplglAYSGIYDFNAATDANLYAFgw 594
Cdd:COG4771 343 YRYDD------------------------------------------------------LDSSSFLGGADASRDTYGL-- 366
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 595 svtekvltgYARYDIQaeMSDGASL-AGdvgvqvVRVDQSSNglaasgspvavitdvSDQVSYTHLLPSMNLVARLNGGW 673
Cdd:COG4771 367 ---------FAQDEWK--LTDKLTLtAG------LRYDYYST---------------FGASNYTAFSPRLGLRYDLSDNL 414
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 674 SLRLGVARQLARPRMDQMRASINFSYDASRAGNTNvnlspwggsggnprLRPWVADSVDVSVEKYFGPDSY-VSLAGYYK 752
Cdd:COG4771 415 TLRASYGRGFRAPSLAELYGSGTGTPGRYVLGNPD--------------LKPETSDNYELGLEYRLGNGGLsLSLTGFYT 480
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 753 YLETYIYQQQLlydfsgfpvtsgpepAIRQGVVSIFQNGQGGHLYGAEAAFALSFAtltsalDGFGVLGSVSYTESGItp 832
Cdd:COG4771 481 DIKDLIVLVPV---------------GPGPGDVLQYENVGKARTYGLELELKYRLG------KGLTLTASYTYLDSKI-- 537
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2564896700 833 DPGNPTQPLPGLSKWVASGTVYFE-KSGFSARASVRHRSGflaELSGVGTDRIQRLAKAETIVDAQIGYEF 902
Cdd:COG4771 538 DDGDTGEPLPNVPPHKANLGLDYRlPKWWLLLLLTRYYGG---RYVTPPSGRLEGYTPGYTLLDLRASYKL 605
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
431-952 |
8.82e-23 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 102.93 E-value: 8.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 431 NGPYDLLGFSANGDGTYTFDPTLDYANAGviqLTSPQGWGADNTPGGQDGFLNNPKTTDELIAFRAAVQRELGPN---AG 507
Cdd:pfam00593 3 QLSLDLLGDDTLLTLGYDYSRYTDGLDLG---LTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGlswLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 508 KIELGANYTKRDKTLDLARFYLGLKANAAAPGHDVSVPIPSDQLLDPTKLDFLGIPGMvSYDPLGLAYSGIYDFNAATDA 587
Cdd:pfam00593 80 TLRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGV-ELRTAGLDYRRLDDDAYDPYD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 588 NLYAFGWSVTEKVLTGYARYdIQAEMSDGASLAGDVGVQVVRVDQSSNGLAASGSPVavitdvsdQVSYTHLLPSMNLVA 667
Cdd:pfam00593 159 PANPSSSSYSDTTTDSYGLY-LQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNF--------SRSYSAFSPRLGLVY 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 668 RLNGGWSLRLGVARQLARPRMDQMRAsinfsydasragnTNVNLSPWGGSGGNPRLRPWVADSVDVSVeKYFGPDSYVSL 747
Cdd:pfam00593 230 KPTDNLSLYASYSRGFRAPSLGELYG-------------SGSGGGGGAVAGGNPDLKPETSDNYELGL-KYDDGRLSLSL 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 748 AGYYKYLETYIYQQqllydfsgfpvtsgPEPAIRQGVVSIFQNGQGGHLYGAEAAFALSFatltsaLDGFGVLGSVSYTE 827
Cdd:pfam00593 296 ALFYIDIKNLITSD--------------PDGPGLGGTVYTYTNVGKARIRGVELELSGRL------WGLGLSGGGYTYTD 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 828 SGITPDPGNPTQPLPGLSKWVAS-GTVY-FEKSGFSARASVRH-RSGFLAELSGVGTDRIqrlaKAETIVDAQIGYEFQs 904
Cdd:pfam00593 356 ADDDADADDTGNPLPNVPRHTANlGLTYdFPLGGWGARLGARYvGSGERRYGDAANTFKT----PGYTLVDLSAGYRLN- 430
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 2564896700 905 galEGLGIQLQAQNLTDEPFSTYDPADDRLTIDYQRYGTRYLLGASYR 952
Cdd:pfam00593 431 ---KNLTLRLGVNNLFDKYYKRYYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
70-174 |
6.04e-15 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 71.53 E-value: 6.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 70 TKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQ-RLDGRAQVISVRGLSPDFAATLLNGREQvTTGDNRGVEFDQ 148
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSsGGGGGGSSISIRGFGSNRVLVLVDGVPL-NSGGGGSVDLNS 79
|
90 100
....*....|....*....|....*.
gi 2564896700 149 YPSELMGAVDVYKTPYAGLIGQGLSG 174
Cdd:pfam07715 80 IDPEDIERVEVLKGPASALYGSGAIG 105
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
55-272 |
3.05e-13 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 71.06 E-value: 3.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 55 IVVTGFRAAlatsvATKRQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQR--LDGRAQVISVRGLSPDFAATLLNG 132
Cdd:COG4206 1 VVVTATRLE-----QSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSsgGPGSAASISIRGLGSNQTLVLIDG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 133 ReQVTTGDNRGVEFDQYPSELMGAVDVYKTPYAGLIG-QGLSGTINLRTIRPLDHGKrvlavnlrgeivspGKLNAGTSD 211
Cdd:COG4206 76 V-PLNDPSLGGVDLSLIPPDDIERIEVLKGAASALYGsDAIGGVINITTKKGKKGFK--------------GSVSASYGS 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2564896700 212 KG-WRASATYvdQFANDTLGVMIGVAHLTSPtqferfNAWGYPRFETNNDNYGIRNTQGTAD 272
Cdd:COG4206 141 FGtRRLSASL--SGGAGKFSYSLSASYRRSD------GYRYNDPDLRNNDGYENTSLNARLG 194
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
624-922 |
6.90e-12 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 69.57 E-value: 6.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 624 GVQVVRVDQSSNGLAASGSPvaviTDVSDQVSYTHLLPSMNLVARLNGGWSLRLGVARQLARPRMDQMRasinfsydasr 703
Cdd:COG4772 400 GLRYEHIRRDRTDRYSTRTG----GDDSGSNSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFGDLA----------- 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 704 agntnvnlspwGGSGGNPRLRPWVADSVDVSVEkyFGPDSYVS--LAGYYKYletyiYQQQLLYDFSGfpvtsgpepair 781
Cdd:COG4772 465 -----------YGNGGNPDLKPEKSWNYELGTR--GRIGNGLSaeVALFYID-----YDNELGSCSAA------------ 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 782 QGVVSIFQNGQGGHLYGAEAAFALSFAtlTSALDGFGVLGSVSYTESGITPDPGNPTQ--PLPGLSKWVASGTVYFEKSG 859
Cdd:COG4772 515 GGDRSTFTNAGETRHQGLELALDYDLL--KGGGLGLPLFAAYTYTDAEFTSDFGPVFAgnRLPYVPRHQLTAGLGYEHGG 592
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2564896700 860 FSARASVRHRSGFLAELSGVGTDRIQRLAKAETIVDAQIGYEFQsgalEGLGIQLQAQNLTDE 922
Cdd:COG4772 593 WTANLNGRYVSEQFTDAANTVADGSFGKIPSYTVLDLSASYDFG----KNLSLFAGVNNLFDK 651
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
39-449 |
8.48e-06 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 49.51 E-value: 8.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 39 APTADPVQADDTAQEDIVVTGFR------AALATSVATK-----RQSNQIVESVSAEDIGKLPDNSIAEAIARLPGLTAQ 107
Cdd:COG4773 19 AQAAAAAAAEATTLPEVTVTGTAegtggyTAKSSSTATKldtplRETPQSVSVVTRQLIEDQGATTLDDALRNVPGVTVS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 108 RLDGRAQV-ISVRGLSPDfaATLLNGREQVTTGDnrgvefDQYPSELMGAVDVYKTPYAGLIGQG-LSGTINLRTIRPLD 185
Cdd:COG4773 99 SYDGGGRDsFSIRGFSID--NYLRDGLPLGGFGG------GQPDTANLERVEVLKGPAGLLYGAGsPGGLVNLVTKRPTA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 186 HgkrvlavnlrgeivspgklnagtsdkgWRASATYvdqfandTLGvmigvahltsptqferfnawgyprfetNNDNYgir 265
Cdd:COG4773 171 E---------------------------PQGEVSL-------SAG---------------------------SWDTY--- 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 266 ntQGTAD-----TADDTFTPRpeyaaANGALiiGGSKPYVQSDELERTGAMGTLQWRPDPALNITLDGYYSRFRdeqtlr 340
Cdd:COG4773 187 --RATADvggplNEDGTLRYR-----LNAAY--EDGDSFRDGVDNRRTLIAPSLDWDLTDDTTLTLGAEYQDDD------ 251
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 341 giefplywgnAILNPGYTVTDGIITDGTWRNVKGvvrNDANLREADLYSAGLNVTYE-SEGWKLLGDLSYSRVDREDKvl 419
Cdd:COG4773 252 ----------STGDRGFLPLDGTLLDLPRSTNLG---EPWDYYDTETTTLFAELEHRfNDDWSLRANARYSDSDRDGR-- 316
|
410 420 430
....*....|....*....|....*....|
gi 2564896700 420 ETYAGTSRGAGNGPYDLLGFSANGDGTYTF 449
Cdd:COG4773 317 SAYAYGAPDAATGTLTRYASARDGDSRSDS 346
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
42-180 |
1.17e-03 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 42.56 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 42 ADPVQADDTAQEDIVVTGfrAALATSVATKRQSnqiVESVSAEDIGKLPDNSIAEAIARLPGLTAQRLDGRAQVISVRGL 121
Cdd:PRK10064 20 AWPVLAVDDDGETMVVTA--SAVEQNLKDAPAS---ISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGL 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2564896700 122 SPDFAATLLNG-REQVTTGDNRGVEFDQ--YPSELMGAVDVYKTPYAGLIGQ-GLSGTINLRT 180
Cdd:PRK10064 95 DSSYTLILIDGkRVNSRNAVFRHNDFDLnwIPVDAIERIEVVRGPMSSLYGSdALGGVVNIIT 157
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
814-953 |
1.56e-03 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 42.17 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 814 LDGFGVLGSVSYTESGITPDPGNPTQ--PLPGLSKWVAS-GTVY-FEKSGFSARASVRHRSGFLAelsgvGTDRIQRLaK 889
Cdd:COG4774 509 TPGWSVLAGYTYLDAEITKSANAANVgnRLPNVPRHSASlWTTYdLPLPGLTLGGGVRYVGSRYA-----DAANTVKL-P 582
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2564896700 890 AETIVDAQIGYEFQsgalEGLGIQLQAQNLTDE-------PFSTYDPADDRltidyqrygtRYLLGASYRF 953
Cdd:COG4774 583 SYTRFDAGASYRLN----KNLTLRLNVNNLTDKryyasayGSGYVTPGAPR----------TVLLSASYRF 639
|
|
| OMP_b-brl_3 |
pfam14905 |
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ... |
648-951 |
3.28e-03 |
|
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.
Pssm-ID: 434300 [Multi-domain] Cd Length: 407 Bit Score: 41.10 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 648 TDVSDQVSYTHLLPSMNLVARLN--GGWSLRLGVARQLARPRMDQMRASINFSydasraGNTNVnlspwggSGGNPRLRP 725
Cdd:pfam14905 148 TNETFKRNYFNLFPSASLSYKLNdnNSLQLSLYYRRIINRPSYWDLNPFRNYS------DPYNY-------SQGNPNLKP 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 726 WVADSVDVSVEKyfgpDSYVSLAGYYKYLETYIYQQqllydfsgfpVTSGPEPAIrqgVVSIFQNGQGGHLYGAEAAFAL 805
Cdd:pfam14905 215 EYTNSFELGYTY----KWKLSLSLSYRYTNDVIQQT----------FITDDNDNV---TYTTYENLGKSNSYGLELSASF 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564896700 806 SFA---TLTSALDGFgvlgsvsYTESGITPDPGNPTQpLPGLSkWVASGTVYFEKsGFSARASVRHRSGFlaeLSGVGTD 882
Cdd:pfam14905 278 NPTkwwSLNGNLNGY-------YNKYKIDGSLNSDFS-NFGFN-WNLNNTFTLPK-GWSLQLNGNYRSPR---VTGQGKI 344
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2564896700 883 riqrlaKAETIVDAQIGYEFQSGALEglgIQLQAQNL--TDEPFSTYDPADDRLTIDYQRYGTRYL-LGASY 951
Cdd:pfam14905 345 ------KPFYSLDLGLSKSFLKKKLT---LSLNVNDIfnTRKFRSTTNYDNGFIQSYNNKWDSRSVrLSLSY 407
|
|
| |
