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Conserved domains on  [gi|2570310335|ref|WP_307437510|]
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PrpF domain-containing protein [Bacillus sp. V2I10]

Protein Classification

2-methylaconitate cis-trans isomerase PrpF family protein( domain architecture ID 15201204)

2-methylaconitate cis-trans isomerase PrpF family protein similar to PrpF that isomerizes trans-aconitate to cis-aconitate through a base-catalyzed proton abstraction coupled with a rotation about the C2-C3 bond of 2-methylaconitate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PrpF COG2828
2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and ...
 2-363 2.01e-177

2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and conversion];


:

Pssm-ID: 442076  Cd Length: 373  Bit Score: 497.75  E-value: 2.01e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   2 KVPVVLMRGGTSKGVFLNFEDMPADRLLWDEFLLDIMGSPDRRQIDGLGGANSLTSKAAIIKKANLEEIDVEYTFAQISI 81
Cdd:COG2828     5 KIPCVLMRGGTSKGVFFLASDLPADPAARDRLLLAVMGSPDPRQIDGLGGATSLTSKVAIVSPSTRPDADVDYLFAQVSV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  82 ENQLVDFKGNCGNISSAVGPYAIEQGLVPAIEPITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGVPGTGSPIYLS 161
Cdd:COG2828    85 DKPVVDWSGNCGNILAAVGPFAIEEGLVDAQDGETTVRIWNVNTGKIIVAHVPTPDGQVQYEGDFEIDGVPGTAAPIALE 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 162 FTNAEGAVTGKLFPTGNEKDVIQTSRGpIEVSIVDVANPLVFVNAKDVGLNGTELPHEFT--PENLAELEEIRAAAAELC 239
Cdd:COG2828   165 FLDPAGSVTGALLPTGNAVDTIDVGGG-IEVTCIDAGMPVVFVRAADLGLTGTELPAELDadPALLARLEAIRLAAGVRM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 240 GFASKEtatkqSPAVPKMTLIAPPLDYIDVTETPRsASEMDCTIRMMSMQKPHQALAITGAICTTCCAYLKDTILSDLIT 319
Cdd:COG2828   244 GLGDVS-----RPVTPKIALVAPPRDYGTSSGTVK-ADDIDILVRYFSPGKCHHAMAVTGAVCIATAAAIPGTVVNELAG 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2570310335 320 VQNE--VFRLGHPAGIMQTKTDIIAG----HIRAIKVVRTARIILEGYVY 363
Cdd:COG2828   318 GGADrgEVRIGHPSGTLSVGAEVDGDgggwTVTKAGVLRTARRLMEGEVY 367
 
Name Accession Description Interval E-value
PrpF COG2828
2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and ...
 2-363 2.01e-177

2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and conversion];


Pssm-ID: 442076  Cd Length: 373  Bit Score: 497.75  E-value: 2.01e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   2 KVPVVLMRGGTSKGVFLNFEDMPADRLLWDEFLLDIMGSPDRRQIDGLGGANSLTSKAAIIKKANLEEIDVEYTFAQISI 81
Cdd:COG2828     5 KIPCVLMRGGTSKGVFFLASDLPADPAARDRLLLAVMGSPDPRQIDGLGGATSLTSKVAIVSPSTRPDADVDYLFAQVSV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  82 ENQLVDFKGNCGNISSAVGPYAIEQGLVPAIEPITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGVPGTGSPIYLS 161
Cdd:COG2828    85 DKPVVDWSGNCGNILAAVGPFAIEEGLVDAQDGETTVRIWNVNTGKIIVAHVPTPDGQVQYEGDFEIDGVPGTAAPIALE 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 162 FTNAEGAVTGKLFPTGNEKDVIQTSRGpIEVSIVDVANPLVFVNAKDVGLNGTELPHEFT--PENLAELEEIRAAAAELC 239
Cdd:COG2828   165 FLDPAGSVTGALLPTGNAVDTIDVGGG-IEVTCIDAGMPVVFVRAADLGLTGTELPAELDadPALLARLEAIRLAAGVRM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 240 GFASKEtatkqSPAVPKMTLIAPPLDYIDVTETPRsASEMDCTIRMMSMQKPHQALAITGAICTTCCAYLKDTILSDLIT 319
Cdd:COG2828   244 GLGDVS-----RPVTPKIALVAPPRDYGTSSGTVK-ADDIDILVRYFSPGKCHHAMAVTGAVCIATAAAIPGTVVNELAG 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2570310335 320 VQNE--VFRLGHPAGIMQTKTDIIAG----HIRAIKVVRTARIILEGYVY 363
Cdd:COG2828   318 GGADrgEVRIGHPSGTLSVGAEVDGDgggwTVTKAGVLRTARRLMEGEVY 367
PrpF pfam04303
PrpF protein; PrpF is a protein found in the 2-methylcitrate pathway. It is structurally ...
 2-364 6.80e-145

PrpF protein; PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.


Pssm-ID: 398133  Cd Length: 384  Bit Score: 415.80  E-value: 6.80e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   2 KVPVVLMRGGTSKGVFLNFEDMPADRLL----WDEFLLDIMGSPDRR--QIDGLGGANSLTSKAAIIKKANLEEIDVEYT 75
Cdd:pfam04303   3 RIPATYMRGGTSKGVFFRLEDLPEDCRVpgtaRDALLLRVIGSPDPYgkQIDGMGGGNSSTSKVVIISKSSDPDHDVDYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  76 FAQISIENQLVDFKGNCGNISSAVGPYAIEQGLV-PAIEP---ITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGV 151
Cdd:pfam04303  83 FGQVSIDEPFVDWTGNCGNLSAAVGPFAIEAGLVdAARIPhrgVTAVRIWQVNIGKTIIAHVPVPNGQVQEEGDFEIDGV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 152 PGTGSPIYLSFTNAEGAVTGKLFPTGNEKDVIQTSR-GPIEVSIVDVANPLVFVNAKDVGLNGTELPHEFT--PENLAEL 228
Cdd:pfam04303 163 PFPAAEVALEFLDPADDGTGAMFPTGNLIDDLDVPGlGTIEATCINAGIPTVFVDAEALGYTGTELQEEINgdPQALARF 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 229 EEIRAAAAELCGFASKETATKQSPAVPKMTLIAPPLDYIDVTETPRSASEMDCTIRMMSMQKPHQALAITGAICTTCCAY 308
Cdd:pfam04303 243 ETLRAYGALKMGLIGRVEEMVLRQHTPKLAFVAPPQDYKASGGKWVSAVEIDLLVRAMSMGKLHHALAGTAAVAIGSAAA 322

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2570310335 309 LKDTILSDLI-TVQNEVFRLGHPAGIMQTKTDIIAGH----IRAIKVVRTARIILEGYVYT 364
Cdd:pfam04303 323 VPGTLVNRAAgGGERTNVRFGHPSGTLDVGAEAEQQDgqwtVLRAIMSRSARILMEGWVRV 383
OMA_tautomer NF033377
4-oxalomesaconate tautomerase;
8-363 5.52e-122

4-oxalomesaconate tautomerase;


Pssm-ID: 468005  Cd Length: 347  Bit Score: 356.01  E-value: 5.52e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   8 MRGGTSKGVFLNFEDMPADRLLWDEFLLDIMGSPDRRQIDGLGGANSLTSKAAIIKKANLEEIDVEYTFAQISIENQLVD 87
Cdd:NF033377    1 MRGGTSKGPFFLASDLPADPAERDAVLLAAMGSPDPRQIDGIGGADPLTSKVAIVSPSTRPDADVDYLFAQVSVDEARVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  88 FKGNCGNISSAVGPYAIEQGLVPAIEPITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGVPGTGSPIYLSFTNAEG 167
Cdd:NF033377   81 TAPNCGNMLAGVGPFAIERGLVPAQGGETTVRIFNVNTGQIAEATVQTPGGRVEYEGDARIDGVPGTAAPVPLNFLDAAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 168 AVTGKLFPTGNEKDVIQTsrGPIEVSIVDVANPLVFVNAKDVGLNGTELPHEF--TPENLAELEEIRAAAAELCGFASKE 245
Cdd:NF033377  161 SKTGALLPTGNARDVIDG--VEVEVTCIDNGMPVVLIRAADLGLTGYESPAELdaDTALKARLEAIRLQAGPLMGLGDVS 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 246 TATkqspaVPKMTLIAPPLDyiDVTETPRSASEMDCtirmmsmqkpHQALAITGAICTTCCAYLKDTILSDLITVQ---N 322
Cdd:NF033377  239 DKV-----VPKMVLVAPPRA--GGAISTRYFIPHRC----------HASIGVTGAVSVATACLLPGSVAHGLAGLPgggR 301

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2570310335 323 EVFRLGHPAG----IMQTKTDIIAGHIRAiKVVRTARIILEGYVY 363
Cdd:NF033377  302 KRVSVEHPSGefdvELELDGEVAGEVTRA-GLLRTARKLFDGEVF 345
PRK13969 PRK13969
proline racemase; Provisional
 92-155 9.92e-04

proline racemase; Provisional


Pssm-ID: 184427 [Multi-domain]  Cd Length: 334  Bit Score: 40.61  E-value: 9.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2570310335  92 CGNISSAVGPYAIEQGLVPAIEPITKVRIfnTNTQKIIIAEVEVENGRVKTEGMCSIPG----------VPGTG 155
Cdd:PRK13969   91 CGHGSIGAATCAVETGIVKVEEPYTHIKL--EAPAGMINARVKVEDGKAKEVSIVNVPAflykkdveidVPDYG 162
 
Name Accession Description Interval E-value
PrpF COG2828
2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and ...
 2-363 2.01e-177

2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and conversion];


Pssm-ID: 442076  Cd Length: 373  Bit Score: 497.75  E-value: 2.01e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   2 KVPVVLMRGGTSKGVFLNFEDMPADRLLWDEFLLDIMGSPDRRQIDGLGGANSLTSKAAIIKKANLEEIDVEYTFAQISI 81
Cdd:COG2828     5 KIPCVLMRGGTSKGVFFLASDLPADPAARDRLLLAVMGSPDPRQIDGLGGATSLTSKVAIVSPSTRPDADVDYLFAQVSV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  82 ENQLVDFKGNCGNISSAVGPYAIEQGLVPAIEPITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGVPGTGSPIYLS 161
Cdd:COG2828    85 DKPVVDWSGNCGNILAAVGPFAIEEGLVDAQDGETTVRIWNVNTGKIIVAHVPTPDGQVQYEGDFEIDGVPGTAAPIALE 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 162 FTNAEGAVTGKLFPTGNEKDVIQTSRGpIEVSIVDVANPLVFVNAKDVGLNGTELPHEFT--PENLAELEEIRAAAAELC 239
Cdd:COG2828   165 FLDPAGSVTGALLPTGNAVDTIDVGGG-IEVTCIDAGMPVVFVRAADLGLTGTELPAELDadPALLARLEAIRLAAGVRM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 240 GFASKEtatkqSPAVPKMTLIAPPLDYIDVTETPRsASEMDCTIRMMSMQKPHQALAITGAICTTCCAYLKDTILSDLIT 319
Cdd:COG2828   244 GLGDVS-----RPVTPKIALVAPPRDYGTSSGTVK-ADDIDILVRYFSPGKCHHAMAVTGAVCIATAAAIPGTVVNELAG 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2570310335 320 VQNE--VFRLGHPAGIMQTKTDIIAG----HIRAIKVVRTARIILEGYVY 363
Cdd:COG2828   318 GGADrgEVRIGHPSGTLSVGAEVDGDgggwTVTKAGVLRTARRLMEGEVY 367
PrpF pfam04303
PrpF protein; PrpF is a protein found in the 2-methylcitrate pathway. It is structurally ...
 2-364 6.80e-145

PrpF protein; PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.


Pssm-ID: 398133  Cd Length: 384  Bit Score: 415.80  E-value: 6.80e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   2 KVPVVLMRGGTSKGVFLNFEDMPADRLL----WDEFLLDIMGSPDRR--QIDGLGGANSLTSKAAIIKKANLEEIDVEYT 75
Cdd:pfam04303   3 RIPATYMRGGTSKGVFFRLEDLPEDCRVpgtaRDALLLRVIGSPDPYgkQIDGMGGGNSSTSKVVIISKSSDPDHDVDYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  76 FAQISIENQLVDFKGNCGNISSAVGPYAIEQGLV-PAIEP---ITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGV 151
Cdd:pfam04303  83 FGQVSIDEPFVDWTGNCGNLSAAVGPFAIEAGLVdAARIPhrgVTAVRIWQVNIGKTIIAHVPVPNGQVQEEGDFEIDGV 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 152 PGTGSPIYLSFTNAEGAVTGKLFPTGNEKDVIQTSR-GPIEVSIVDVANPLVFVNAKDVGLNGTELPHEFT--PENLAEL 228
Cdd:pfam04303 163 PFPAAEVALEFLDPADDGTGAMFPTGNLIDDLDVPGlGTIEATCINAGIPTVFVDAEALGYTGTELQEEINgdPQALARF 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 229 EEIRAAAAELCGFASKETATKQSPAVPKMTLIAPPLDYIDVTETPRSASEMDCTIRMMSMQKPHQALAITGAICTTCCAY 308
Cdd:pfam04303 243 ETLRAYGALKMGLIGRVEEMVLRQHTPKLAFVAPPQDYKASGGKWVSAVEIDLLVRAMSMGKLHHALAGTAAVAIGSAAA 322

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2570310335 309 LKDTILSDLI-TVQNEVFRLGHPAGIMQTKTDIIAGH----IRAIKVVRTARIILEGYVYT 364
Cdd:pfam04303 323 VPGTLVNRAAgGGERTNVRFGHPSGTLDVGAEAEQQDgqwtVLRAIMSRSARILMEGWVRV 383
OMA_tautomer NF033377
4-oxalomesaconate tautomerase;
8-363 5.52e-122

4-oxalomesaconate tautomerase;


Pssm-ID: 468005  Cd Length: 347  Bit Score: 356.01  E-value: 5.52e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335   8 MRGGTSKGVFLNFEDMPADRLLWDEFLLDIMGSPDRRQIDGLGGANSLTSKAAIIKKANLEEIDVEYTFAQISIENQLVD 87
Cdd:NF033377    1 MRGGTSKGPFFLASDLPADPAERDAVLLAAMGSPDPRQIDGIGGADPLTSKVAIVSPSTRPDADVDYLFAQVSVDEARVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  88 FKGNCGNISSAVGPYAIEQGLVPAIEPITKVRIFNTNTQKIIIAEVEVENGRVKTEGMCSIPGVPGTGSPIYLSFTNAEG 167
Cdd:NF033377   81 TAPNCGNMLAGVGPFAIERGLVPAQGGETTVRIFNVNTGQIAEATVQTPGGRVEYEGDARIDGVPGTAAPVPLNFLDAAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 168 AVTGKLFPTGNEKDVIQTsrGPIEVSIVDVANPLVFVNAKDVGLNGTELPHEF--TPENLAELEEIRAAAAELCGFASKE 245
Cdd:NF033377  161 SKTGALLPTGNARDVIDG--VEVEVTCIDNGMPVVLIRAADLGLTGYESPAELdaDTALKARLEAIRLQAGPLMGLGDVS 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 246 TATkqspaVPKMTLIAPPLDyiDVTETPRSASEMDCtirmmsmqkpHQALAITGAICTTCCAYLKDTILSDLITVQ---N 322
Cdd:NF033377  239 DKV-----VPKMVLVAPPRA--GGAISTRYFIPHRC----------HASIGVTGAVSVATACLLPGSVAHGLAGLPgggR 301

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2570310335 323 EVFRLGHPAG----IMQTKTDIIAGHIRAiKVVRTARIILEGYVY 363
Cdd:NF033377  302 KRVSVEHPSGefdvELELDGEVAGEVTRA-GLLRTARKLFDGEVF 345
PRK13969 PRK13969
proline racemase; Provisional
 92-155 9.92e-04

proline racemase; Provisional


Pssm-ID: 184427 [Multi-domain]  Cd Length: 334  Bit Score: 40.61  E-value: 9.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2570310335  92 CGNISSAVGPYAIEQGLVPAIEPITKVRIfnTNTQKIIIAEVEVENGRVKTEGMCSIPG----------VPGTG 155
Cdd:PRK13969   91 CGHGSIGAATCAVETGIVKVEEPYTHIKL--EAPAGMINARVKVEDGKAKEVSIVNVPAflykkdveidVPDYG 162
Pro_racemase pfam05544
Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which ...
 76-242 1.85e-03

Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Swiss:Q9NCP4 a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.


Pssm-ID: 398923  Cd Length: 325  Bit Score: 39.97  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335  76 FAQISIENqlVDFKGNCGNISSAVGPYAIEQGLVPAIEPITKVRIfnTNTQKIIIAEVEVENGRVkteGMCSIPGVPgtg 155
Cdd:pfam05544  69 AGVIFMEP--SGYLPMCGHNTIGVVTVLLETGIVPPQEPETRLNL--ETPAGLVEARAECRDGKV---ERVSLRNVP--- 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2570310335 156 spiylSFTNAEGAVTgklfptgnekDViqtsRGPIEVSiVDVA---NPLVFVNAKDVGLngtelphEFTPENLAEL---- 228
Cdd:pfam05544 139 -----SFVYALDVEV----------EV----PGLGRVR-VDIAyggNFYAIVDAEQLGF-------DIEPAEARELvaag 191

                         170
                  ....*....|....
gi 2570310335 229 EEIRAAAAELCGFA 242
Cdd:pfam05544 192 EKIRDALNEQLKVV 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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