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Conserved domains on  [gi|2581472531|ref|WP_311202147|]
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MULTISPECIES: YicS family protein [unclassified Pantoea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YicS_fam super family cl49580
YicS family protein; Members of the YicS protein family, found in Escherichia coli and related ...
 2-65 3.84e-20

YicS family protein; Members of the YicS protein family, found in Escherichia coli and related species, average 100 amino acids in size, with a signal peptide and two widely spaced invariant Cys residues.


The actual alignment was detected with superfamily member NF041639:

Pssm-ID: 469522  Cd Length: 96  Bit Score: 75.80  E-value: 3.84e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2581472531  2 TDDLRQTCQLPPAFSDEKLRQTFLNDKhnlkQNQLTLTAAAQALKNQDNPAYRERMAQVVCPPQ 65
Cdd:NF041639  37 LKDLRKHCTPPSALSDEKFANTVLSSE----QNKLHVREAALALERNNQDNYWEAIGKVECPDM 96
 
Name Accession Description Interval E-value
YicS_fam NF041639
YicS family protein; Members of the YicS protein family, found in Escherichia coli and related ...
 2-65 3.84e-20

YicS family protein; Members of the YicS protein family, found in Escherichia coli and related species, average 100 amino acids in size, with a signal peptide and two widely spaced invariant Cys residues.


Pssm-ID: 469522  Cd Length: 96  Bit Score: 75.80  E-value: 3.84e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2581472531  2 TDDLRQTCQLPPAFSDEKLRQTFLNDKhnlkQNQLTLTAAAQALKNQDNPAYRERMAQVVCPPQ 65
Cdd:NF041639  37 LKDLRKHCTPPSALSDEKFANTVLSSE----QNKLHVREAALALERNNQDNYWEAIGKVECPDM 96
 
Name Accession Description Interval E-value
YicS_fam NF041639
YicS family protein; Members of the YicS protein family, found in Escherichia coli and related ...
 2-65 3.84e-20

YicS family protein; Members of the YicS protein family, found in Escherichia coli and related species, average 100 amino acids in size, with a signal peptide and two widely spaced invariant Cys residues.


Pssm-ID: 469522  Cd Length: 96  Bit Score: 75.80  E-value: 3.84e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2581472531  2 TDDLRQTCQLPPAFSDEKLRQTFLNDKhnlkQNQLTLTAAAQALKNQDNPAYRERMAQVVCPPQ 65
Cdd:NF041639  37 LKDLRKHCTPPSALSDEKFANTVLSSE----QNKLHVREAALALERNNQDNYWEAIGKVECPDM 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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