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Conserved domains on  [gi|2775718643|ref|WP_367634985|]
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AraC family ligand binding domain-containing protein [Acetobacter oryzifermentans]

Protein Classification

AraC family ligand binding domain-containing protein( domain architecture ID 10491792)

AraC family ligand binding domain-containing protein belonging to the cupin superfamily, a diverse superfamily with the active site generally located at the center of a conserved domain forming a beta-barrel fold

CATH:  2.60.120.10
Gene Ontology:  GO:0005488
PubMed:  19478949|14697267
SCOP:  3001825

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AraC_binding pfam02311
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ...
 17-121 1.08e-14

AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.


:

Pssm-ID: 396749 [Multi-domain]  Cd Length: 134  Bit Score: 67.46  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775718643  17 PGGMDVLRASCFDYRYPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEAVEcDLGWDYCAFYPTVP 96
Cdd:pfam02311   1 NPGLEGIEARYPGHSFPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPES-EDGWRYRWLYFEPE 79

                          90       100
                  ....*....|....*....|....*..
gi 2775718643  97 FIDVLAAD--ILPGRAISTLDTISSAR 121
Cdd:pfam02311  80 LLERILADisILAGGPLPLLRDPELAA 106
 
Name Accession Description Interval E-value
AraC_binding pfam02311
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ...
 17-121 1.08e-14

AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.


Pssm-ID: 396749 [Multi-domain]  Cd Length: 134  Bit Score: 67.46  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775718643  17 PGGMDVLRASCFDYRYPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEAVEcDLGWDYCAFYPTVP 96
Cdd:pfam02311   1 NPGLEGIEARYPGHSFPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPES-EDGWRYRWLYFEPE 79

                          90       100
                  ....*....|....*....|....*..
gi 2775718643  97 FIDVLAAD--ILPGRAISTLDTISSAR 121
Cdd:pfam02311  80 LLERILADisILAGGPLPLLRDPELAA 106
QdoI COG1917
Cupin domain protein related to quercetin dioxygenase [General function prediction only];
1-81 4.29e-05

Cupin domain protein related to quercetin dioxygenase [General function prediction only];


Pssm-ID: 441521 [Multi-domain]  Cd Length: 99  Bit Score: 40.99  E-value: 4.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775718643   1 MANTRDRLKLWRDSSLPGGmdvlrascfdyRYPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEAV 80
Cdd:COG1917    16 LADGEDELEVVRVTFEPGA-----------RTPWHSHPGEELIYVLEGEGEVEVGGEEYELKPGDVVFIPPGVPHAFRNL 84


                  .
gi 2775718643  81 E 81
Cdd:COG1917    85 G 85
cupin_YbfI-like_N cd07001
AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal ...
 32-79 3.34e-03

AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including YbfI, an uncharacterized Bacillus subtilis. In Pseudomonas putida, this protein is thought to regulate the expression of phenylserine aldolase. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.


Pssm-ID: 380405 [Multi-domain]  Cd Length: 76  Bit Score: 35.06  E-value: 3.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2775718643  32 YPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEA 79
Cdd:cd07001    15 FPNHFHDFYVIGFIESGQRTLFCEGKEYTVEPGDLLLINPRDVHSCIQ 62
 
Name Accession Description Interval E-value
AraC_binding pfam02311
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ...
 17-121 1.08e-14

AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.


Pssm-ID: 396749 [Multi-domain]  Cd Length: 134  Bit Score: 67.46  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775718643  17 PGGMDVLRASCFDYRYPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEAVEcDLGWDYCAFYPTVP 96
Cdd:pfam02311   1 NPGLEGIEARYPGHSFPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPES-EDGWRYRWLYFEPE 79

                          90       100
                  ....*....|....*....|....*..
gi 2775718643  97 FIDVLAAD--ILPGRAISTLDTISSAR 121
Cdd:pfam02311  80 LLERILADisILAGGPLPLLRDPELAA 106
QdoI COG1917
Cupin domain protein related to quercetin dioxygenase [General function prediction only];
1-81 4.29e-05

Cupin domain protein related to quercetin dioxygenase [General function prediction only];


Pssm-ID: 441521 [Multi-domain]  Cd Length: 99  Bit Score: 40.99  E-value: 4.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775718643   1 MANTRDRLKLWRDSSLPGGmdvlrascfdyRYPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEAV 80
Cdd:COG1917    16 LADGEDELEVVRVTFEPGA-----------RTPWHSHPGEELIYVLEGEGEVEVGGEEYELKPGDVVFIPPGVPHAFRNL 84


                  .
gi 2775718643  81 E 81
Cdd:COG1917    85 G 85
cupin_YbfI-like_N cd07001
AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal ...
 32-79 3.34e-03

AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including YbfI, an uncharacterized Bacillus subtilis. In Pseudomonas putida, this protein is thought to regulate the expression of phenylserine aldolase. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.


Pssm-ID: 380405 [Multi-domain]  Cd Length: 76  Bit Score: 35.06  E-value: 3.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2775718643  32 YPAHSHDEFVIAAFVRGAQRHRIARYQGIAEPGTVMIIPPGEVHTGEA 79
Cdd:cd07001    15 FPNHFHDFYVIGFIESGQRTLFCEGKEYTVEPGDLLLINPRDVHSCIQ 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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