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Conserved domains on  [gi|2788046142|ref|WP_370513617|]
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MULTISPECIES: monofunctional biosynthetic peptidoglycan transglycosylase [unclassified Pantoea]

Protein Classification

biosynthetic peptidoglycan transglycosylase( domain architecture ID 1001727)

biosynthetic peptidoglycan transglycosylase is involved in the final stages of peptidoglycan synthesis

CATH:  1.10.3810.10
Gene Ontology:  GO:0071555|GO:0008955|GO:0009252|GO:0008360
PubMed:  8830253
SCOP:  4002510

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13481 super family cl29529
glycosyltransferase; Provisional
 2-216 8.18e-84

glycosyltransferase; Provisional


The actual alignment was detected with superfamily member TIGR02070:

Pssm-ID: 475222 [Multi-domain]  Cd Length: 224  Bit Score: 248.53  E-value: 8.18e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142   2 VKCLLAwAVLWI-----GGIAVFAFLPVPFSAVMAERQAGAWLHGDISYVAHSEWVSMDNISPWMALAVIAAEDQKFPEH 76
Cdd:TIGR02070   4 IGCLVA-GVLLFnlavfAALASWRFVPPPSTAFMVAEKLALWGQGDPTCGIQHRWRPYDQISPNLKRAVIASEDAKFVEH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  77 WGFDVGAIQQVLDNS--SGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILTVYLNIAEFGPGI 154
Cdd:TIGR02070  83 HGFDWEAIQDALEKNekSGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGV 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2788046142 155 FGAEAAAQHYFHKPASRLTIAEAALLAAVLPNPIRFRADAPSGYVRQRQQWIMRQMRQLGGE 216
Cdd:TIGR02070 163 FGAEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYLGLP 224
 
Name Accession Description Interval E-value
mono_pep_trsgly TIGR02070
monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the ...
 2-216 8.18e-84

monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273951 [Multi-domain]  Cd Length: 224  Bit Score: 248.53  E-value: 8.18e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142   2 VKCLLAwAVLWI-----GGIAVFAFLPVPFSAVMAERQAGAWLHGDISYVAHSEWVSMDNISPWMALAVIAAEDQKFPEH 76
Cdd:TIGR02070   4 IGCLVA-GVLLFnlavfAALASWRFVPPPSTAFMVAEKLALWGQGDPTCGIQHRWRPYDQISPNLKRAVIASEDAKFVEH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  77 WGFDVGAIQQVLDNS--SGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILTVYLNIAEFGPGI 154
Cdd:TIGR02070  83 HGFDWEAIQDALEKNekSGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGV 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2788046142 155 FGAEAAAQHYFHKPASRLTIAEAALLAAVLPNPIRFRADAPSGYVRQRQQWIMRQMRQLGGE 216
Cdd:TIGR02070 163 FGAEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYLGLP 224
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
 45-210 2.31e-60

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 187.34  E-value: 2.31e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  45 YVAHSEWVSMDNISPWMALAVIAAEDQKFPEHWGFDVGAIQQVLDN--SSGERMRGASTLSQQTAKNLFLWDGRSWLRKG 122
Cdd:pfam00912   9 GEENREYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLSnlRSGRIVQGGSTITQQLAKNLFLTPERTLTRKL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142 123 LEAGMTVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTIAEAALLAAVLPNPIRFRADAPSGYVRQR 202
Cdd:pfam00912  89 KEAVLALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLRNPERAKRR 168


                  ....*...
gi 2788046142 203 QQWIMRQM 210
Cdd:pfam00912 169 RNLVLDRM 176
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
 5-214 7.10e-58

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 192.83  E-value: 7.10e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142   5 LLAWAVLWIGGIAVFAFLPVPFSAVMAERQAG-------------AWLhgdisYVAHSEWVSMDNISPWMALAVIAAEDQ 71
Cdd:COG0744    22 LAVLVLAALAGLVALYVADLPDPEELEDLALPqtstiydrdgtliATL-----GDENREWVPLDQIPPHLKDAVVAIEDR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  72 KFPEHWGFDVGAIQQ-VLDN-SSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILTVYLNIAE 149
Cdd:COG0744    97 RFYEHGGVDPKGIARaLVANlTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKLERKYSKDEILELYLNTVY 176

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2788046142 150 FGPGIFGAEAAAQHYFHKPASRLT----------IaeaallaavlPNPIRFRADAPSGYVRQRQQWIMRQMRQLG 214
Cdd:COG0744   177 FGRGAYGIEAAAQYYFGKSASDLTlaeaallaglV----------KAPSYYDPYRNPEAAKERRNLVLDRMVEQG 241
mrcA PRK11636
penicillin-binding protein 1a; Provisional
 52-174 1.67e-21

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 92.50  E-value: 1.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  52 VSMDNISPWMALAVIAAEDQKFPEHWGFD-VGAIQQV-LDNSSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTV 129
Cdd:PRK11636   69 LTLDQIPPEMVKAFIATEDSRFYEHHGVDpVGIFRAAsVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAI 148

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2788046142 130 GIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTI 174
Cdd:PRK11636  149 RIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTL 193
 
Name Accession Description Interval E-value
mono_pep_trsgly TIGR02070
monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the ...
 2-216 8.18e-84

monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273951 [Multi-domain]  Cd Length: 224  Bit Score: 248.53  E-value: 8.18e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142   2 VKCLLAwAVLWI-----GGIAVFAFLPVPFSAVMAERQAGAWLHGDISYVAHSEWVSMDNISPWMALAVIAAEDQKFPEH 76
Cdd:TIGR02070   4 IGCLVA-GVLLFnlavfAALASWRFVPPPSTAFMVAEKLALWGQGDPTCGIQHRWRPYDQISPNLKRAVIASEDAKFVEH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  77 WGFDVGAIQQVLDNS--SGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILTVYLNIAEFGPGI 154
Cdd:TIGR02070  83 HGFDWEAIQDALEKNekSGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGV 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2788046142 155 FGAEAAAQHYFHKPASRLTIAEAALLAAVLPNPIRFRADAPSGYVRQRQQWIMRQMRQLGGE 216
Cdd:TIGR02070 163 FGAEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYLGLP 224
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
 45-210 2.31e-60

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 187.34  E-value: 2.31e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  45 YVAHSEWVSMDNISPWMALAVIAAEDQKFPEHWGFDVGAIQQVLDN--SSGERMRGASTLSQQTAKNLFLWDGRSWLRKG 122
Cdd:pfam00912   9 GEENREYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLSnlRSGRIVQGGSTITQQLAKNLFLTPERTLTRKL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142 123 LEAGMTVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTIAEAALLAAVLPNPIRFRADAPSGYVRQR 202
Cdd:pfam00912  89 KEAVLALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLRNPERAKRR 168


                  ....*...
gi 2788046142 203 QQWIMRQM 210
Cdd:pfam00912 169 RNLVLDRM 176
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
 5-214 7.10e-58

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 192.83  E-value: 7.10e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142   5 LLAWAVLWIGGIAVFAFLPVPFSAVMAERQAG-------------AWLhgdisYVAHSEWVSMDNISPWMALAVIAAEDQ 71
Cdd:COG0744    22 LAVLVLAALAGLVALYVADLPDPEELEDLALPqtstiydrdgtliATL-----GDENREWVPLDQIPPHLKDAVVAIEDR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  72 KFPEHWGFDVGAIQQ-VLDN-SSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILTVYLNIAE 149
Cdd:COG0744    97 RFYEHGGVDPKGIARaLVANlTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKLERKYSKDEILELYLNTVY 176

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2788046142 150 FGPGIFGAEAAAQHYFHKPASRLT----------IaeaallaavlPNPIRFRADAPSGYVRQRQQWIMRQMRQLG 214
Cdd:COG0744   177 FGRGAYGIEAAAQYYFGKSASDLTlaeaallaglV----------KAPSYYDPYRNPEAAKERRNLVLDRMVEQG 241
PBP_1a_fam TIGR02074
penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan ...
 48-214 9.70e-37

penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273955 [Multi-domain]  Cd Length: 531  Bit Score: 134.69  E-value: 9.70e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  48 HSEWVSMDNISPWMALAVIAAEDQKFPEHWGFDVGAIQQ--VLDNSSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEA 125
Cdd:TIGR02074   1 RREYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGIGRaaVANITSGRVLEGGSTITQQLAKNLYLTNERTITRKIQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142 126 GMTVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTIAEAALLAAVLPNPIRFRADAPSGYVRQRQQW 205
Cdd:TIGR02074  81 LLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQFYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFKNPERAKDRRNL 160


                  ....*....
gi 2788046142 206 IMRQMRQLG 214
Cdd:TIGR02074 161 VLSNMVENG 169
MrcA COG5009
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];
50-214 1.86e-34

Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 444033 [Multi-domain]  Cd Length: 785  Bit Score: 129.51  E-value: 1.86e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  50 EWVSMDNISPWMALAVIAAEDQKFPEHWGFDVGAI-QQVLDN-SSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGM 127
Cdd:COG5009    67 IPVPIEEIPPLLINAFLAAEDKRFYEHPGVDPIGIaRAAVVNlRTGRRVQGGSTITQQVAKNFLLSPERTLTRKIKEAIL 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142 128 TVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTIAEAalla-----avlpNPIRFRADApsgyvRQR 202
Cdd:COG5009   147 ALRIEQELSKDEILELYLNKIYLGHRAYGVAAAAQTYFGKSLDELTLAEAamlaglpkapsryNPIRNPERA-----LER 221

                         170
                  ....*....|..
gi 2788046142 203 QQWIMRQMRQLG 214
Cdd:COG5009   222 RNYVLGRMLELG 233
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 51-176 2.12e-25

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 103.37  E-value: 2.12e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  51 WVSMDNISPWMALAVIAAEDQKFPEHWGFDVGAI----QQVLdnSSGERMRGASTLSQQTAKnlFLWDG-RSWLRKGLEA 125
Cdd:COG4953    67 PVPLDEVSPRYLQALLAYEDRRFYYHPGVNPLALlraaWQNL--RSGRIVSGGSTLTMQVAR--LLEPRpRTLSGKLRQI 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2788046142 126 GMTVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTIAE 176
Cdd:COG4953   143 LRALQLERRYSKDEILELYLNLAPYGGNIEGVEAASLAYFGKPPSRLSLAE 193
mrcA PRK11636
penicillin-binding protein 1a; Provisional
 52-174 1.67e-21

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 92.50  E-value: 1.67e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  52 VSMDNISPWMALAVIAAEDQKFPEHWGFD-VGAIQQV-LDNSSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTV 129
Cdd:PRK11636   69 LTLDQIPPEMVKAFIATEDSRFYEHHGVDpVGIFRAAsVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAI 148

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2788046142 130 GIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLTI 174
Cdd:PRK11636  149 RIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTL 193
PRK13481 PRK13481
glycosyltransferase; Provisional
 49-165 3.07e-20

glycosyltransferase; Provisional


Pssm-ID: 184078 [Multi-domain]  Cd Length: 232  Bit Score: 85.24  E-value: 3.07e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  49 SEWVSMDNISPWMALAVIAAEDQKFPEHWGFDVGAIQQVLDNSSGER-MRGASTLSQQTAKNLFLWDGRSWLRKGLEAGM 127
Cdd:PRK13481   45 SSFVSADNMPEYVKGAFISMEDERFYKHHGFDLKGTTRALFSTISDRdVQGGSTITQQVVKNYFYDNERSFTRKVKELFV 124

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2788046142 128 TVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYF 165
Cdd:PRK13481  125 AHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYF 162
mrcB PRK09506
bifunctional glycosyl transferase/transpeptidase; Reviewed
 66-174 1.18e-16

bifunctional glycosyl transferase/transpeptidase; Reviewed


Pssm-ID: 236544 [Multi-domain]  Cd Length: 830  Bit Score: 78.27  E-value: 1.18e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  66 IAAEDQKFPEHWGFDVGAI-QQVLDN-SSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILTV 143
Cdd:PRK09506  228 LATEDRHFYEHDGISLYSIgRAVLANlTAGRTVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMALIMDARYSKDRILEL 307

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2788046142 144 YLNIAEFGPG----IFGAEAAAQHYFHKPASRLTI 174
Cdd:PRK09506  308 YLNEVYLGQSgddqIRGFPLASLYYFGRPVEELSL 342
PRK14850 PRK14850
penicillin-binding protein 1b; Provisional
 65-174 8.57e-14

penicillin-binding protein 1b; Provisional


Pssm-ID: 237835 [Multi-domain]  Cd Length: 764  Bit Score: 69.87  E-value: 8.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  65 VIAAEDQKFPEHWGFDVGAI-QQVLDN-SSGERMRGASTLSQQTAKNLFLWDGRSWLRKGLEAGMTVGIETVWSKRRILT 142
Cdd:PRK14850  173 LLAIEDKYFYEHDGIHLSSIgRAFLVNlMSGHTIQGGSTLTQQLVKNLFLTNTRSLWRKINEIYMALILDRFYSKDRILE 252

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2788046142 143 VYLNIAEFGPG----IFGAEAAAQHYFHKPASRLTI 174
Cdd:PRK14850  253 LYLNEVYLGQDgneqIRGFPLASIYYFGRPINELNL 288
PRK11240 PRK11240
penicillin-binding protein 1C; Provisional
 52-173 1.20e-09

penicillin-binding protein 1C; Provisional


Pssm-ID: 183049 [Multi-domain]  Cd Length: 772  Bit Score: 57.40  E-value: 1.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788046142  52 VSMDNISPWMALAVIAAEDQKFPEHWGFDVGAIQQV--LDNSSGERMRGASTLSQQTAKnlfLWD--GRSWLRKGLEAGM 127
Cdd:PRK11240   65 VTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAawQDLTSGRVISGGSTLTMQVAR---LLDphPRTFGGKIRQLWR 141

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2788046142 128 TVGIETVWSKRRILTVYLNIAEFGPGIFGAEAAAQHYFHKPASRLT 173
Cdd:PRK11240  142 ALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLS 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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