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Conserved domains on  [gi|2689248694|gb|WWP56559|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Spatula clypeata]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 606.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   3 QTTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMP 82
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  83 MLALLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIM 162
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 163 LTGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 243 TLTAIIFLNPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLP 322
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 2689248694 323 PSM 325
Cdd:MTH00111  321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 606.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   3 QTTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMP 82
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  83 MLALLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIM 162
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 163 LTGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 243 TLTAIIFLNPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLP 322
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 2689248694 323 PSM 325
Cdd:MTH00111  321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
14-310 8.62e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 339.06  E-value: 8.62e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  14 LLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLLALTAW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  94 VPLPLPFSLV--DLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGNYTLST 171
Cdd:pfam00146  83 AVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 172 FAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAIIFLN 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2689248694 252 pSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 243 -GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-306 2.41e-107

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 315.92  E-value: 2.41e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   3 QTTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMP 82
Cdd:COG1005     5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  83 MLALLLALTAWVPLPL--PFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSM 160
Cdd:COG1005    85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 161 IMLTGNYTLSTFAVAQE-PLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIM 239
Cdd:COG1005   165 VLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2689248694 240 LMNTLTAIIFL----NPSTLGPPTELFPII-LATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005   245 LVSALATTLFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 606.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   3 QTTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMP 82
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  83 MLALLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIM 162
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 163 LTGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 243 TLTAIIFLNPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLP 322
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 2689248694 323 PSM 325
Cdd:MTH00111  321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 4-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 525.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   4 TTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPM 83
Cdd:MTH00134    3 STLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  84 LALLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIML 163
Cdd:MTH00134   83 LALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 164 TGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00134  163 TGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 244 LTAIIFLNPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLPP 323
Cdd:MTH00134  243 LSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322


                  ..
gi 2689248694 324 SM 325
Cdd:MTH00134  323 QL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 518.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   5 TMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPML 84
Cdd:MTH00071    3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTM 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  85 ALLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLT 164
Cdd:MTH00071   83 ALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 165 GNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 244
Cdd:MTH00071  163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2689248694 245 TAIIFLNPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLPP 323
Cdd:MTH00071  243 STILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 9-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 504.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   9 YLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLL 88
Cdd:MTH00104    2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  89 ALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGNYT 168
Cdd:MTH00104   82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 169 LSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAII 248
Cdd:MTH00104  162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689248694 249 FLNPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLPPSM 325
Cdd:MTH00104  242 FLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-323 2.68e-150

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 424.32  E-value: 2.68e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   6 MVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLA 85
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  86 LLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTG 165
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 166 NYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2689248694 246 AIIFLNPSTLgpptelfPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLPP 323
Cdd:MTH00218  241 VILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 7-325 7.54e-144

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 408.60  E-value: 7.54e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   7 VTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLAL 86
Cdd:MTH00040    4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  87 LLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGN 166
Cdd:MTH00040   84 FLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 167 YTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTA 246
Cdd:MTH00040  164 FSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 247 IIFLNPSTlgPPTELFP---IILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLPP 323
Cdd:MTH00040  244 ILFLGGGS--PFNEIFPiniIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321


                  ..
gi 2689248694 324 SM 325
Cdd:MTH00040  322 NY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 6-320 2.50e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 340.57  E-value: 2.50e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   6 MVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLA 85
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  86 LLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTG 165
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 166 NYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2689248694 246 AIIFLNPSTLgpptelfpIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAG 320
Cdd:MTH00195  241 TILFLGGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
14-310 8.62e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 339.06  E-value: 8.62e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  14 LLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLLALTAW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  94 VPLPLPFSLV--DLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGNYTLST 171
Cdd:pfam00146  83 AVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 172 FAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAIIFLN 251
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2689248694 252 pSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 243 -GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-318 1.72e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 338.67  E-value: 1.72e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   6 MVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLA 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  86 LLLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTG 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 166 NYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2689248694 246 AIIFLNPStlgppteLFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICY 318
Cdd:MTH00193  241 VLMFLGGD-------LLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 9-307 1.77e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 328.37  E-value: 1.77e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   9 YLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLL 88
Cdd:MTH00143    3 SLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  89 ALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGNYT 168
Cdd:MTH00143   83 ALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 169 LSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAII 248
Cdd:MTH00143  163 FIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVL 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2689248694 249 FLnpSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLAL 307
Cdd:MTH00143  243 FF--GGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-306 2.41e-107

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 315.92  E-value: 2.41e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   3 QTTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMP 82
Cdd:COG1005     5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  83 MLALLLALTAWVPLPL--PFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSM 160
Cdd:COG1005    85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 161 IMLTGNYTLSTFAVAQE-PLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIM 239
Cdd:COG1005   165 VLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2689248694 240 LMNTLTAIIFL----NPSTLGPPTELFPII-LATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005   245 LVSALATTLFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-314 2.85e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 315.05  E-value: 2.85e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   7 VTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLAL 86
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  87 LLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGN 166
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 167 YTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTA 246
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2689248694 247 IIFlnpstLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSL 314
Cdd:MTH00225  241 ILF-----FGGFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 6-323 1.35e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 313.97  E-value: 1.35e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   6 MVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLA 85
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  86 LLLALTAW--VPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIML 163
Cdd:MTH00054   81 LTLAFIAWgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 164 TGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 244 LTAIIFL----NPSTLGPPTELFpIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYA 319
Cdd:MTH00054  241 FGVILFLggwlVISGPTSYFSNF-VWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFN 319


                  ....
gi 2689248694 320 GLPP 323
Cdd:MTH00054  320 ALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 5-324 6.91e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 312.44  E-value: 6.91e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   5 TMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPML 84
Cdd:MTH00216    4 FIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  85 ALLLALTAW--VPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIM 162
Cdd:MTH00216   84 SFTLALIVWgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 163 LTGNYTLSTFAVAQEP-LYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:MTH00216  164 CVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 242 NTLTAIIFLNpSTLGPPTELF--PIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYA 319
Cdd:MTH00216  244 SCLTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFN 322


                  ....*
gi 2689248694 320 GLPPS 324
Cdd:MTH00216  323 GPPPI 327
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
4-310 2.22e-101

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 300.57  E-value: 2.22e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   4 TTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPM 83
Cdd:PRK06076    7 DLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  84 LALLLALTAWVPLPL--PFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMI 161
Cdd:PRK06076   87 IAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVV 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 162 MLTGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:PRK06076  167 LLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILV 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2689248694 242 NTLTAIIFL---NPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:PRK06076  247 SALITTLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 1.77e-89

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 271.12  E-value: 1.77e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   1 MPQTTMVTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFIT 80
Cdd:MTH00029    1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  81 MPMLALLLALTAW--VPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILL 158
Cdd:MTH00029   81 APIISFTLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 159 SMIMLTGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029  161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 239 MLMNTLTAIIFLN------------PSTLGPPTELFPIILA----TKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLP 302
Cdd:MTH00029  241 ILMSCMMTIFFLGgwlspldgiptpPEAFSIFEQIASSKSSfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLP 320

                         330       340
                  ....*....|....*....|.
gi 2689248694 303 LTLALCLWHTSLPICYAGLPP 323
Cdd:MTH00029  321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 7-309 1.01e-84

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 257.79  E-value: 1.01e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   7 VTYLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLAL 86
Cdd:MTH00010    3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  87 LLALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGN 166
Cdd:MTH00010   83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 167 YTLSTFAVAQEPLYLIFSSwPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTA 246
Cdd:MTH00010  163 FSFSKIIMSQYSWILLMII-PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2689248694 247 IIFLNPStlgPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCL 309
Cdd:MTH00010  242 VFFTSFI---PSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-305 5.91e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 206.29  E-value: 5.91e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  12 MSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLLALT 91
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  92 AWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGNYTL-S 170
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFvS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 171 TFAVAQEPLYLIFsswplammwYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAIIFL 250
Cdd:MTH00090  161 SFSLSLFVIYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2689248694 251 NPSTLgpptelfpiilatKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00090  232 KFSFL-------------MLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 14-314 3.00e-52

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 175.91  E-value: 3.00e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  14 LLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLLALTAW 93
Cdd:CHL00032   34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  94 VPLPLPFSLV--DLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGnyTLST 171
Cdd:CHL00032  114 LVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLST 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 172 FAVAQEPLYLIFSSWPL------AMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:CHL00032  192 VDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV 271

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 246 AIIFLNPSTLGPP----TELFPIILATKVLLLSSGFLWV--------------RASYPRFRYDQLMHLLWKNFLPLTLAL 307
Cdd:CHL00032  272 TVLYLGGWNLSIPyifiPELFEINKTGGVFGTTIGIFITlaktylflfisittRWTLPRLRMDQLLNLGWKFLLPISLGN 351


                  ....*..
gi 2689248694 308 CLWHTSL 314
Cdd:CHL00032  352 LLLTTSF 358
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 9-305 3.49e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 165.87  E-value: 3.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694   9 YLIMSLLYIIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLL 88
Cdd:MTH00058    3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  89 ALTAWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTGNYT 168
Cdd:MTH00058   83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 169 LSTFAVAQEPLYLIFssWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAII 248
Cdd:MTH00058  163 LVDFYYSGWLSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2689248694 249 FLNPStlgpptelFPIILATKVLLLssgFLWVRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00058  241 FFGGG--------FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
11-310 2.55e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 124.53  E-value: 2.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  11 IMSLLYIIPILIAVAFLTL----VERKILSYMQSRKGPnivgpfGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLAL 86
Cdd:COG0650     1 MMLILLALLQLLLALLLAPlllgIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAAPYVALA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694  87 LLALTAW-VPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSMIMLTG 165
Cdd:COG0650    75 AMLLAALlVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689248694 166 NYTLSTFAVAQE---PLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:COG0650   155 STSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLL 234

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2689248694 243 TLTAIIFLnPSTLGPPTELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:COG0650   235 SLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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