|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-329 |
6.34e-82 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 251.67 E-value: 6.34e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 1 SQLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYS 80
Cdd:MTH00160 6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 81 FMsqysTFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMStFIGFTIIASILVGSLG 160
Cdd:MTH00160 86 NN----ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 161 GLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIFLLL 240
Cdd:MTH00160 161 GLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 241 LSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFLFTYTESKLYPVTTwHNAFNPVLLALT 320
Cdd:MTH00160 241 LSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK-KNKFSLILNFLS 319
|
....*....
gi 2719956974 321 SISTLGLPL 329
Cdd:MTH00160 320 FISLFGLIL 328
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
19-278 |
1.55e-30 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 117.03 E-value: 1.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 19 SSSWLGVWMGLEINLLSFIPLMT-NTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSS----------YSFMSQYST 87
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskaLTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 88 FN---TLICSALLLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLL-------SYVIEMSTFIGFTIIASILV 156
Cdd:pfam00361 81 LLllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 157 GSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENM----WELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNS--- 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGlak 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2719956974 230 --HLVKSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTT 278
Cdd:pfam00361 241 tmPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
3-294 |
9.39e-26 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 106.74 E-value: 9.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 3 LLFTFSLvLGTLISVTSSSWLGVWMGLEINLLSFIPL-MTNTKNIMSTEASLKYFLIQALASAILLFSILLMF------S 75
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYgatgslN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 76 LSSYSFMSQYSTFNT--------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------SY 138
Cdd:COG1007 185 LAGIAAALAAGGANSpllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 139 VIEMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWE----LYFMIYIFLSLSIVLVFN-L 213
Cdd:COG1007 265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLGAFAVILlL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 214 SQIYHINQTLLAMNNshLVKSAIFLLLLSLGGL------PPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLR 287
Cdd:COG1007 345 SRKGGEAEEIEDLAG--LARRSPLLALAMTIFLlslagiPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
....*..
gi 2719956974 288 LTFLAFL 294
Cdd:COG1007 423 VVKAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
10-327 |
2.35e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 94.24 E-value: 2.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 10 VLGTLISVTSSSWLGVWMGLEINLLSFIPLMT-NTKNIMSTEASLKYFLIQALASAILLFSILLMF-----------SLS 77
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 78 SYSFMSQYSTFNT---LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA---PLMLLSYVIEMSTFIGFTII 151
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 152 ------ASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWE----LYFMIYIFLSLSIVLVFNLSQIYHINQ 221
Cdd:TIGR01770 272 laiiafLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLSLLRSYKDEW 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 222 TL-------LAMNNShLVKSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFl 294
Cdd:TIGR01770 352 IEyisdfagLFKTNP-ILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMY- 429
|
330 340 350
....*....|....*....|....*....|...
gi 2719956974 295 ftYTESKLYPVTTWHNAFNPVLLALTSISTLGL 327
Cdd:TIGR01770 430 --FDKPERRIPSNPQSKAQSLLLSISALFILFL 460
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-329 |
6.34e-82 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 251.67 E-value: 6.34e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 1 SQLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYS 80
Cdd:MTH00160 6 SKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 81 FMsqysTFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMStFIGFTIIASILVGSLG 160
Cdd:MTH00160 86 NN----ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 161 GLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIFLLL 240
Cdd:MTH00160 161 GLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 241 LSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFLFTYTESKLYPVTTwHNAFNPVLLALT 320
Cdd:MTH00160 241 LSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKK-KNKFSLILNFLS 319
|
....*....
gi 2719956974 321 SISTLGLPL 329
Cdd:MTH00160 320 FISLFGLIL 328
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
2-329 |
1.13e-66 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 212.78 E-value: 1.13e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 2 QLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYSF 81
Cdd:MTH00105 6 LIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 82 MSQYS--TFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLmllSYVIEMSTFIGFTI-----IASI 154
Cdd:MTH00105 86 ITKLTnpTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPL---SILYQISPSINPNLlltlaILSI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 155 LVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKS 234
Cdd:MTH00105 163 LIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 235 AIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTF---LAFLFTYTESKLYpvttWHNA 311
Cdd:MTH00105 243 LILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYstsLTMFPSTNNMKMK----WQFE 318
|
330 340
....*....|....*....|.
gi 2719956974 312 F---NPVLLALTSISTLGLPL 329
Cdd:MTH00105 319 NtkpMTLLPTLIILSTMLLPL 339
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-329 |
6.61e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 198.12 E-value: 6.61e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 1 SQLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYS 80
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 81 FMSQYS--TFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLsyvIEMSTFIGFTI-----IAS 153
Cdd:MTH00112 85 DITQLTnpTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL---LMTSNSLNPTLlltlaILS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 154 ILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVK 233
Cdd:MTH00112 162 TLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 234 SAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFlaflftYTESKLYPVTT-----W 308
Cdd:MTH00112 242 TTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTY------ISTITLPPNTTnmmmkW 315
|
330 340
....*....|....*....|...
gi 2719956974 309 H--NAFNPVLLALTSISTLGLPL 329
Cdd:MTH00112 316 RtkPKKNTLTATLTTLSTLLLPL 338
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-329 |
1.11e-58 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 192.45 E-value: 1.11e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 3 LLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILL-MFSLSSYSF 81
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqAWLSGSWSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 82 MSQYSTFNTLICS-ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMSTFIGFTIIA--SILVGS 158
Cdd:MTH00041 87 NGPLNTLSSIIITlALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGilSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 159 LGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIFL 238
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 239 LLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFLFTYTESKL-------YPVTTWHNA 311
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSIslfswrnSGNITVYGV 326
|
330
....*....|....*...
gi 2719956974 312 FNPVLLALTSISTLGLPL 329
Cdd:MTH00041 327 ILSILSSISILGLLLIPL 344
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
7-327 |
6.00e-58 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 190.40 E-value: 6.00e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 7 FSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYSFMSQYS 86
Cdd:MTH00135 11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 87 --TFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVI-EMSTFIGFTIIASILVGSLGGLN 163
Cdd:MTH00135 91 hpLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIApTNPTLLITLGLTSTLVGGWGGLN 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 164 QSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIFLLLLSL 243
Cdd:MTH00135 171 QTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSL 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 244 GGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFlAFLFTYTESKLYPVTTW--HNAFNPVLLALTS 321
Cdd:MTH00135 251 GGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY-AMTLTISPNTLNGTTPWrlPSTQLTLPLAIST 329
|
....*.
gi 2719956974 322 ISTLGL 327
Cdd:MTH00135 330 TATLML 335
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
5-329 |
1.50e-57 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 189.36 E-value: 1.50e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 5 FTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILL-MFSLSSYSFMS 83
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInAWFTGEWTIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 84 QYSTFNTLICS-ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLsyvIEMSTFIGFTI-----IASILVG 157
Cdd:MTH00070 89 MQTPLPTIMLTiALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQISHLLNSNLliimgLLSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 158 SLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIF 237
Cdd:MTH00070 166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMM 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 238 LLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFLfTYTESKLYPVTTW--HNAFNPV 315
Cdd:MTH00070 246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSL-TTSPNTSNSKLYWrfKNKTNNL 324
|
330
....*....|....
gi 2719956974 316 LLALTSISTLGLPL 329
Cdd:MTH00070 325 LSLTIILSLMLLPI 338
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-294 |
1.71e-57 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 188.56 E-value: 1.71e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 1 SQLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYS 80
Cdd:MTH00144 5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 81 FMSqystfnTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLS---YVIEMSTFIGFTIIASILVG 157
Cdd:MTH00144 85 FSM------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSnflDLYWLAYLLCVISVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 158 SLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQtLLAMNNSHLVKSAIF 237
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSII 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2719956974 238 LLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFL 294
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
2-329 |
2.72e-57 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 188.64 E-value: 2.72e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 2 QLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYSF 81
Cdd:MTH00200 6 LPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 82 MSQY--STFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEM--STFIGFTIIASILVG 157
Cdd:MTH00200 86 ISEMlgPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 158 SLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIF 237
Cdd:MTH00200 166 GWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLG 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 238 LLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAfLFTYTESKLYPVTTWHNAFNPVLL 317
Cdd:MTH00200 246 LTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLT-LLTLSPNQINMMSSWRTKSNSNLL 324
|
330
....*....|....
gi 2719956974 318 --ALTSISTLGLPL 329
Cdd:MTH00200 325 vgLLLLLSILGLPL 338
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-329 |
6.74e-56 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 184.60 E-value: 6.74e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 1 SQLLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSlsSYS 80
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS--FPS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 81 FMSqySTFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYV--IEMSTFIGFTIIASILVGS 158
Cdd:MTH00011 85 LLK--NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 159 LGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIFL 238
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 239 LLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFLFTYTESKLYpvttwHNAFNPVLLA 318
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLK-----SAPYEPKTKI 317
|
330
....*....|.
gi 2719956974 319 LTSISTLGLPL 329
Cdd:MTH00011 318 LISMCTLSLGL 328
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
4-297 |
2.87e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 172.55 E-value: 2.87e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 4 LFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYSFMs 83
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 84 qystFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMSTFIGFTIIASILVGSLGGLN 163
Cdd:MTH00197 81 ----SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 164 QSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNSHLVKSAIFLLLLSL 243
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2719956974 244 GGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFLFTY 297
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSN 290
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
19-278 |
1.55e-30 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 117.03 E-value: 1.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 19 SSSWLGVWMGLEINLLSFIPLMT-NTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSS----------YSFMSQYST 87
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskaLTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 88 FN---TLICSALLLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLL-------SYVIEMSTFIGFTIIASILV 156
Cdd:pfam00361 81 LLllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 157 GSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENM----WELYFMIYIFLSLSIVLVFNLSQIYHINQTLLAMNNS--- 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGlak 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2719956974 230 --HLVKSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTT 278
Cdd:pfam00361 241 tmPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
9-288 |
1.13e-26 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 109.34 E-value: 1.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 9 LVLGTLISVTSSSWLGVWMGLEINLLS-FIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLS-SYSFMSQYS 86
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTgETSIQGINS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 87 TFN-----TLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMSTFIGFTIIASILVGSLGG 161
Cdd:MTH00199 186 ILTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 162 LNQSSLRKLMAYSSINHIGWMLAAMLTGEN----MWELYFMIYIFLSL---SIVLVFNLSQIYHINQTLLAMNNSHLVKS 234
Cdd:MTH00199 266 LNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLSRKNPVIALT 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2719956974 235 AIFlLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRL 288
Cdd:MTH00199 346 LAL-TFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
3-327 |
6.29e-26 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 107.21 E-value: 6.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 3 LLFTFSlVLGTLISVTSSSWLGVWMGLEI-NLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLS-SYS 80
Cdd:PRK05777 107 LLVLFA-LLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATgSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 81 F--MSQYSTFNT-----------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------SY 138
Cdd:PRK05777 186 FagIAKALADGSgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 139 VIEMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTG-----ENMWeLYFMIYIFLSL---SIVLV 210
Cdd:PRK05777 266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGtaegySAVL-FYLLAYLFMTLgafGVISL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 211 -----FNLSQIYHINqtllAMNNSHLVKSAIFLLLLSLGG-LPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFY 284
Cdd:PRK05777 345 lrrkgGEAESISDFA----GLSKRSPLLAAVMTIFMLSLAgIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFY 420
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2719956974 285 YLRLTFLAFLftyTESKLYPVTTWHNAFNPVLLALTSISTLGL 327
Cdd:PRK05777 421 YLRVIKLMYF---DEPPRDAPVNWPLSAGGAVLSVSALLVLVL 460
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
9-288 |
8.69e-26 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 105.50 E-value: 8.69e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 9 LVLGTLISVTSSSWLGVWMGLEINLLS-FIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMF------------- 74
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCgttgglhlsyinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 75 ----SLSSYSFMsqYSTFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMSTFIGFTI 150
Cdd:MTH00196 82 vlnsGQSFSSVS--VPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 151 IASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGE----NMWELYFMIYIFLSL---SIVLVFNLSQIYHINQTL 223
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSIcvfSIILALNVYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2719956974 224 LAMNNSHLVkSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRL 288
Cdd:MTH00196 240 LSRRLPILA-ITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
3-294 |
9.39e-26 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 106.74 E-value: 9.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 3 LLFTFSLvLGTLISVTSSSWLGVWMGLEINLLSFIPL-MTNTKNIMSTEASLKYFLIQALASAILLFSILLMF------S 75
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYgatgslN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 76 LSSYSFMSQYSTFNT--------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------SY 138
Cdd:COG1007 185 LAGIAAALAAGGANSpllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 139 VIEMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWE----LYFMIYIFLSLSIVLVFN-L 213
Cdd:COG1007 265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLGAFAVILlL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 214 SQIYHINQTLLAMNNshLVKSAIFLLLLSLGGL------PPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLR 287
Cdd:COG1007 345 SRKGGEAEEIEDLAG--LARRSPLLALAMTIFLlslagiPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
....*..
gi 2719956974 288 LTFLAFL 294
Cdd:COG1007 423 VVKAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
10-327 |
2.35e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 94.24 E-value: 2.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 10 VLGTLISVTSSSWLGVWMGLEINLLSFIPLMT-NTKNIMSTEASLKYFLIQALASAILLFSILLMF-----------SLS 77
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 78 SYSFMSQYSTFNT---LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA---PLMLLSYVIEMSTFIGFTII 151
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 152 ------ASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWE----LYFMIYIFLSLSIVLVFNLSQIYHINQ 221
Cdd:TIGR01770 272 laiiafLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLSLLRSYKDEW 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 222 TL-------LAMNNShLVKSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFl 294
Cdd:TIGR01770 352 IEyisdfagLFKTNP-ILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMY- 429
|
330 340 350
....*....|....*....|....*....|...
gi 2719956974 295 ftYTESKLYPVTTWHNAFNPVLLALTSISTLGL 327
Cdd:TIGR01770 430 --FDKPERRIPSNPQSKAQSLLLSISALFILFL 460
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
11-189 |
2.71e-14 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 73.35 E-value: 2.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 11 LGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMST---------EASLKYFLIQALASAILLFSILLMFSLSSYSF 81
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEG 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 82 M----------------SQYSTFNTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVIEMSTF 145
Cdd:MTH00198 279 MlgtilsatlettnielRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2719956974 146 IGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTG 189
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAG 402
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
9-288 |
1.10e-12 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 68.25 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 9 LVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLS-SYSF------ 81
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgTLNMadlaar 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 82 MSQYSTFNTLICSALLL-----KMGAAPFHFWFP-----------ATMEGLSWKNCF--ILMTWQKIAPLMLLSYViemS 143
Cdd:COG0651 196 LAELDPGLLLAAFALLLvgfgiKAALFPLHFWLPdaypaapspvsALLSGLLTKVGVyaILRVLTLLFGADPALFL---G 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 144 TFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWELYFMIYIF--------LSLSIVLVFNLSQ 215
Cdd:COG0651 273 TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalakalLFLAAGAIERATG 352
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2719956974 216 IYHINQTLLAMNNSHLVKSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRL 288
Cdd:COG0651 353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
29-293 |
1.25e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 62.20 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 29 LEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMFSLSSYSFMS----------QYSTFNTLICSALLL 98
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMAdlagalaenpTVVTAFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 99 KMGAAPFHFWFPATM-EGLSWKNCFILMTWQKIA--PLMLLSYVI---------EMSTFIGFTIIASILVGSLGGLNQSS 166
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAvyALIRIYFTVfggdfrfalGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 167 LRKLMAYSSINHIGWMLA--AMLTGENMWE--LY------FMIYIFLSL-SIVLVFNLSQIYHINQtllAMNNSHLVKSA 235
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLglALLTPLALAAglLHllhhalMKGALFLAAgAIEVTYGTRRLSELSG---LGRRMPLTAAA 371
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2719956974 236 IFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAF 293
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
3-293 |
3.31e-10 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 60.79 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 3 LLFTFSLVLGTLISVTSSSWLGVWMGLEINLLSFIPLMTNTK-NIMSTEASLKYFLIQALASAILLFSILLMFSLS---- 77
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKkDVRSNEATMKYLLMGGASSSILVYGFSWLYGLSggei 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 78 -------SYSFMSQYSTFNTLICSALLL-----KMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLSYVI----- 140
Cdd:CHL00049 194 elqeivnGLINTQMYNSPGISIALIFITvgigfKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfy 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 141 ----EMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTGENMWE-----LYFMIYIFLSL---SIV 208
Cdd:CHL00049 274 fssnEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGyasmiTYMLFYIFMNLgtfACI 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 209 LVFNL----SQIYhiNQTLLAMNNSHLVkSAIFLLLLSLGGLPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFY 284
Cdd:CHL00049 354 VLFGLrtgtDNIR--DYAGLYTKDPFLA-LSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYY 430
|
....*....
gi 2719956974 285 YLRLTFLAF 293
Cdd:CHL00049 431 YLKIIKLLM 439
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
48-287 |
1.82e-08 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 55.44 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 48 STEASLKYFLIQALASAILLFSILLMFSLS----SYSFMSQYSTFNTLICSALLL---------KMGAAPFHFWFPATME 114
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLYGLSggstQLSAIALALITSPSLGLALALvfviagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 115 GLSWKNCFILMTWQKIAPLML--------LSYVIEMSTFIgFTIIA--SILVGSLGGLNQSSLRKLMAYSSINHIGWMLA 184
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALairllvtaFPSFDEQWKLL-FTALAilSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 185 AMLTGEN----MWELYFMIYIFLSL---SIVLVFNL----------SQIYHINQTL-LAMNNSHLVKSAIfllllslggl 246
Cdd:PRK02504 318 GLVAGTEagyaSMVFYLLAYLFMNLgafACVILFSLrtgtdqisdyAGLYQKDPLLtLGLSLCLLSLGGI---------- 387
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2719956974 247 PPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLR 287
Cdd:PRK02504 388 PPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
50-294 |
7.39e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 53.56 E-value: 7.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 50 EASLKYFLIQALASAILLFSILLMF------SLSSYSFMSQYSTFNT------LICSALLLKMGAAPFHFWFP-ATMEGL 116
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLYgqygtlNMAYLAVKMSENPTVVakialaLFIAGLAMKSGAVPVHMWLPdAYPAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 117 SWKNCFILMTwqKIAPLMLLSYVIEM-------STFIGFTII----ASILVGSLGGLNQSSLRKLMAYSSINHIGWML-- 183
Cdd:PRK08376 252 SSISAMLLVI--KQAGLYALARVLFSiygpainLATVGWVIIilgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlg 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 184 ----AAMLTGENMWELYFM-----IY-----------IFLSLSIVL----VFNLSQIYHINQTLLAMNNSHLVKSAifll 239
Cdd:PRK08376 330 lgvgLAALGDPAMASYGEIalaggIYhivnhalykalLFLTAGAVIyetgTRNLNELGGLARTMPKTTIAFLIGAA---- 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2719956974 240 llSLGGLPPFMGFFPKWLIIQTlTETSNQFIVIIMVVTTLITLFYYLRLTFLAFL 294
Cdd:PRK08376 406 --AIVGLPPFNGFASKWLIYES-SALFNPILGVIAMIGSVLTLASFVKVFHTAFF 457
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
141-293 |
8.57e-07 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 50.33 E-value: 8.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 141 EMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLA-------AMLTGENMWELYFMI---YIFLSLSIVLV 210
Cdd:PRK12663 270 LLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLglalgtpAGINGAIFYLVHDMVvktALFLIAGSLVR 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 211 FNLSQIYhinQTLLAMNNSHLVKSAIFLLLLSLGG-LPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLT 289
Cdd:PRK12663 350 LTGYRSL---QYLGGLYRKEPLFGALFLILIFAIGgLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIF 426
|
....
gi 2719956974 290 FLAF 293
Cdd:PRK12663 427 FLAY 430
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
50-294 |
1.81e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 49.20 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 50 EASLKYFLIQALASAILLFSILLMFS-------------LSSYSFMSQYSTFNTLICS----------ALLLKMGAAPFH 106
Cdd:PRK12667 164 EAAIKYALIGAVGTTLYFLALAFLYAtfgtlnmadlsakIRGLSFPLTGGLAGNPPLAlgvalalalwAFTIKAAIFPNH 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 107 FWFP-----------ATMEGLSWKNCF-----ILMTWQKIApLMLLSYVIEMSTFIGFTIIASILVGSLGGLNQSSLRKL 170
Cdd:PRK12667 244 FWLPdahpaapspvsAMLSGLVVNVGAyaiirFLYTIFGIS-PSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRL 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 171 MAYSSINHIGWMLAAMLTGENMWELYFMIYI----------FLSLSIVlvfnlsqIYHINQT----LLAMNNSHLVKSAI 236
Cdd:PRK12667 323 LAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksllFLASGVF-------IHAAGTRdideLAGLGRKMPIASFA 395
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2719956974 237 FLLLLSLGG-LPPFMGFFPKWLIIQTLTETSNQFIVIIMVVTTLITLFYYLRLTFLAFL 294
Cdd:PRK12667 396 FLIGALSLVgIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-322 |
5.88e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 44.42 E-value: 5.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 5 FTFSLVLGTLISVtSSSWLGVWMGLEINLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFS--ILLMFSLSSYSFM 82
Cdd:PRK06589 122 FNLTILIGVLIAL-SSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPavILIYTKTGNLDFV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 83 SQYS-TFNTLICSALLLKMGAA-----PFHFWFPATM-----------------EGLSWKNCFILMTWQkiapLMLLSYV 139
Cdd:PRK06589 201 SGGLfSKNQSIILLLMFIYGIAktaifPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFG----LSYLQRI 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 140 IEMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWML--AAMLTGENMWELYFMIYIFLSLSIVLVFNLSQIY 217
Cdd:PRK06589 277 FAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVSHSFAKICLFYSMGSIY 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 218 HIN-----QTLLAMNNSHLVKSAIFLLLLSLGG-LPPFMGFFPKWLIIQTLTETSNQFIVIIM----VVTTLITLFYYLR 287
Cdd:PRK06589 357 SLKkedqvDKLHGTSKSFPLISFIISISSLSLIgIPIFSGFISKFLILLAASEQNQPWLSIIVmlvvIASSILSALYLLK 436
|
330 340 350
....*....|....*....|....*....|....*
gi 2719956974 288 LTFLAFLFTYTESKLYPVTTWHNAFNPVLLALTSI 322
Cdd:PRK06589 437 ILSSIYKPSLSENSFITKSLPYLMQISVITCCCAL 471
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
48-192 |
3.15e-04 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 42.29 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 48 STEASLKYFLIQALASAILLFSILLMFSL-------SSYSFMSQYSTFNTLICSALLL------KMGAAPFHFWFPATME 114
Cdd:PRK08668 145 SRKASLKYFVLSAIGAYAMLYAIFLIYAKtgtfdfaDISQGLINDTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDAYS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 115 ------------GLSWKNCFILMTwqKIAPLMLLSYVIEMSTFIGFT----IIA-----SILVGSLGGLNQSSLRKLMAY 173
Cdd:PRK08668 225 eapqsfsavlsgQLSKLGAYGFLL--VLYVLPGTKLFSEFGTYRGVPlfnyILAwlgniSIIVGTLMAILQEDIKKLIAY 302
|
170
....*....|....*....
gi 2719956974 174 SSINHIGWMLAAMLTGENM 192
Cdd:PRK08668 303 SSVANGGYILVGLGLGTSL 321
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
51-189 |
9.32e-04 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 40.69 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 51 ASLKYFLIQALASAILLFSILLMFSLSSYSF-------MSQYSTFNTLICSALLL----KMGAAPFHFWFPATMEGLSWK 119
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdllellnLPLPFGVQTWLFLAFFIafavKVPLFPLHTWLPDAHVEAPTA 236
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2719956974 120 NCFILM-TWQKIAPLMLLSYVI--------EMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYSSINHIGWMLAAMLTG 189
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLRFNLplfpdaslYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSF 315
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
51-189 |
1.54e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 40.06 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 51 ASLKYFLIQALASAILLFSILLMFSLS-SYSF-------MSQYSTFNTLICSALLL----KMGAAPFHFWFPATMEGlsw 118
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAgALTFdiaelaaAPLPLTAQLLLFLAFFIafavKVPMFPFHTWLPDAHVE--- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 119 kncfilmtwqkiAPL---MLLSYV---------------------IEMSTFIGFTIIASILVGSLGGLNQSSLRKLMAYS 174
Cdd:COG1008 239 ------------APTagsVLLAGVllkmggygllrfalplfpeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYS 306
|
170
....*....|....*
gi 2719956974 175 SINHIGWMLAAMLTG 189
Cdd:COG1008 307 SVSHMGFVLLGIFAL 321
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
247-294 |
1.67e-03 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 40.14 E-value: 1.67e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2719956974 247 PPFMGFFPKWLIIQTLTETS--NQFIVIIMVVTTLITLFYYLRLTFLAFL 294
Cdd:COG1009 384 PPFAGFFSKEAILEAALEAGglGPLLLAVALLGAFLTAFYSFRLFFLVFF 433
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
4-183 |
8.94e-03 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 37.79 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 4 LFTFSLvLGTLISVTSSSWLGVWmglEI-NLLSFIPLMTNTKNIMSTEASLKYFLIQALASAILLFSILLMF-------- 74
Cdd:PRK08667 119 LFILSM-LGVVASANTFSFLFFW---EImALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFiqtgsfel 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2719956974 75 SLSSYSFMSQYSTFNTLICsALLLKMGAAPFHFWFPATMEGlSWKNCFILMT--WQKIAPLMLLSYVIEMST---FIGFT 149
Cdd:PRK08667 195 SPLGASAGILSLVFLLLFL-GFGIKAGIIPFHKWLPYAHPA-SPSNVSALMSgvMLKVAVYGLVRFLMDVLSpelWWGVL 272
|
170 180 190
....*....|....*....|....*....|....*...
gi 2719956974 150 IIA----SILVGSLGGLNQSSLRKLMAYSSINHIGWML 183
Cdd:PRK08667 273 ILLagsiSALLGVIYALKEHDLKGLLAYSSIENIGIIL 310
|
|
| |
