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Conserved domains on  [gi|2720774016|gb|WZW00598|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Acrobates frontalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31798
NADH dehydrogenase subunit 2; Provisional
 1-231 2.79e-106

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00105:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 310.24  E-value: 2.79e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00105  115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINN 160
Cdd:MTH00105  195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 161 NIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00105  275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIILSTMLLPLTPMLSI 345
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-231 2.79e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 310.24  E-value: 2.79e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00105  115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINN 160
Cdd:MTH00105  195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 161 NIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00105  275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIILSTMLLPLTPMLSI 345
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-172 5.56e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.79  E-value: 5.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLL-TWQKIAPTAL-----LYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGW 75
Cdd:pfam00361 106 PDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGY 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  76 MTIIILINPTMTILNLTIYIIA----TLTLFL-----SLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGF 146
Cdd:pfam00361 186 MLIALGAGTIYGIQAAIFHLLThglfSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGF 265

                         170       180
                  ....*....|....*....|....*.
gi 2720774016 147 LPKWLILQELVINNNIIMATIMALSA 172
Cdd:pfam00361 266 LGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-185 1.79e-09

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 57.05  E-value: 1.79e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQI----SPSLNM---KILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHM 73
Cdd:COG1007   226 TPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveaFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  74 GWMTIIILINPTM----TILNLTIYIIATLTLF-----LSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLT 144
Cdd:COG1007   306 GYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTA 385

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2720774016 145 GFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRIIYA 185
Cdd:COG1007   386 GFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-183 2.91e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 56.49  E-value: 2.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSL-------NMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHM 73
Cdd:TIGR01770 226 VPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHV 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  74 GWMTIIILINPTMTILNLTIYI-------IATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLP---PL 143
Cdd:TIGR01770 306 GYILIGLLAGTLEGIKAVLFYIfiyalmsLGAFGVLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAgipPL 385

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2720774016 144 TGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRII 183
Cdd:TIGR01770 386 AGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-231 2.79e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 310.24  E-value: 2.79e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00105  115 VPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAIL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINN 160
Cdd:MTH00105  195 PYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 161 NIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00105  275 NIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIILSTMLLPLTPMLSI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-231 6.95e-73

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 225.07  E-value: 6.95e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSlNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIIL 81
Cdd:MTH00135  116 PEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQ 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  82 INPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNN 161
Cdd:MTH00135  195 FSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDL 274

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016 162 IIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00135  275 PLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTATLMLLPLTPAILA 344
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-231 1.35e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 216.61  E-value: 1.35e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00112  115 LPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINN 160
Cdd:MTH00112  195 TYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQN 274

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 161 NIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQiKTINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00112  275 MTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP-KKNTLTATLTTLSTLLLPLSPMILT 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-231 7.38e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 214.78  E-value: 7.38e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIIL 81
Cdd:MTH00070  116 PEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILT 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  82 INPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNN 161
Cdd:MTH00070  196 FSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNL 275

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016 162 IIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQiKTINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00070  276 TTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKN-KTNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-231 8.59e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 173.62  E-value: 8.59e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00200  115 VPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINN 160
Cdd:MTH00200  195 VYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG 274

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 161 NIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKtINIIPPLAIISSLLLPLSPMFIT 231
Cdd:MTH00200  275 LFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNS-NLLVGLLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 2-230 6.01e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 145.46  E-value: 6.01e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIIL 81
Cdd:MTH00041  116 PDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSA 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  82 INPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNN 161
Cdd:MTH00041  196 YSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNS 275

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 162 IIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKT--INIIPPLAIISSLLLPLSPMFI 230
Cdd:MTH00041  276 ILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITvyGVILSILSSISILGLLLIPLFL 346
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-222 4.05e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 108.43  E-value: 4.05e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNM-KILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTII 79
Cdd:MTH00144  107 VPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  80 ILINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLwNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVIN 159
Cdd:MTH00144  187 ILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMES 265

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2720774016 160 NNIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAIISSLL 222
Cdd:MTH00144  266 SPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLLGGLLFLLLYL 328
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-230 7.57e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 107.99  E-value: 7.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQIspsLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIIL 81
Cdd:MTH00160  111 PEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMM 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  82 INPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNN 161
Cdd:MTH00160  188 ISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNM 267

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2720774016 162 IIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLqwpYPQIKTINIIPPLAIISSLLLPLSPMFI 230
Cdd:MTH00160  268 FFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK---KKKNKFSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-187 2.38e-27

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 106.40  E-value: 2.38e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIIL 81
Cdd:MTH00011  112 PSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISV 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  82 INPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNN 161
Cdd:MTH00011  192 FSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271

                         170       180
                  ....*....|....*....|....*.
gi 2720774016 162 IIMATIMALSALLNLFFYMRIIYATT 187
Cdd:MTH00011  272 ILILLVLIVGSLMNLFYYLNLIFNFM 297
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-218 4.05e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 89.73  E-value: 4.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPslNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00197  102 VPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSL 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTILNLTIYIIATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINN 160
Cdd:MTH00197  180 VYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSN 259

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2720774016 161 NIIMATIMALSALLNLFFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAII 218
Cdd:MTH00197  260 ISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-184 7.73e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 63.88  E-value: 7.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNmkILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIIL 81
Cdd:MTH00199  214 PDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  82 INPTMTI----LNLTIYIIATLTLF---LSLNFASITkIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQ 154
Cdd:MTH00199  292 IGSFESIqaslIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILL 370

                         170       180       190
                  ....*....|....*....|....*....|
gi 2720774016 155 ELVINNNIIMATIMALSALLNLFFYMRIIY 184
Cdd:MTH00199  371 SGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-172 5.56e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.79  E-value: 5.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLL-TWQKIAPTAL-----LYQISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGW 75
Cdd:pfam00361 106 PDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGY 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  76 MTIIILINPTMTILNLTIYIIA----TLTLFL-----SLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGF 146
Cdd:pfam00361 186 MLIALGAGTIYGIQAAIFHLLThglfSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGF 265

                         170       180
                  ....*....|....*....|....*.
gi 2720774016 147 LPKWLILQELVINNNIIMATIMALSA 172
Cdd:pfam00361 266 LGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-183 6.13e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 61.20  E-value: 6.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSLNMkiLMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:MTH00196  118 APDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNI--LLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGI 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  81 LINPTMTI----LNLTIYIIATLTLF---LSLNFAsITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLIL 153
Cdd:MTH00196  196 EIGSFESIqaslVYLFIYIIMSICVFsiiLALNVY-KNLIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274

                         170       180       190
                  ....*....|....*....|....*....|
gi 2720774016 154 QELVINNNIIMATIMALSALLNLFFYMRII 183
Cdd:MTH00196  275 LSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-185 1.79e-09

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 57.05  E-value: 1.79e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQI----SPSLNM---KILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHM 73
Cdd:COG1007   226 TPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveaFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  74 GWMTIIILINPTM----TILNLTIYIIATLTLF-----LSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLT 144
Cdd:COG1007   306 GYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTA 385

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2720774016 145 GFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRIIYA 185
Cdd:COG1007   386 GFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 177-227 1.93e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 51.87  E-value: 1.93e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2720774016 177 FFYMRIIYATTLTTFPTSNNSKLQWPYPQIKTINIIPPLAIISSLLLPLSP 227
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-183 2.91e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 56.49  E-value: 2.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   1 VPEVTQGVPLSSGMVLLTWQKIAPTALLYQISPSL-------NMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHM 73
Cdd:TIGR01770 226 VPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHV 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  74 GWMTIIILINPTMTILNLTIYI-------IATLTLFLSLNFASITKIKSISNLWNKSTSLTVIILLTLLSLGGLP---PL 143
Cdd:TIGR01770 306 GYILIGLLAGTLEGIKAVLFYIfiyalmsLGAFGVLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAgipPL 385

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2720774016 144 TGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRII 183
Cdd:TIGR01770 386 AGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
39-183 3.86e-09

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 55.98  E-value: 3.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIILINPTM----TILNLTIYIIATLTLF-----LSLNFAS 109
Cdd:PRK05777  272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvislLRRKGGE 351

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2720774016 110 ITKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRII 183
Cdd:PRK05777  352 AESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 39-186 5.40e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 49.38  E-value: 5.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIILINPTMTILNLTIYII----ATLTLFLS----LNFASI 110
Cdd:COG0651   274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAagaiERATGT 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2720774016 111 TKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRIIYAT 186
Cdd:COG0651   354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-78 4.16e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 47.16  E-value: 4.16e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLyqISPSLNMKILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTI 78
Cdd:MTH00198  323 PDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 39-185 9.51e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.64  E-value: 9.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTI-IILINPTM---TILNLTIYIIATLTLFLSLN----FASI 110
Cdd:PRK08375  273 LLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLgLALLTPLAlaaGLLHLLHHALMKGALFLAAGaievTYGT 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2720774016 111 TKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRIIYA 185
Cdd:PRK08375  353 RRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 39-78 1.40e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 45.46  E-value: 1.40e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTI 78
Cdd:COG1008   277 LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 39-80 3.88e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.04  E-value: 3.88e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:PRK05846  279 IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGI 320
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 39-184 5.05e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 43.81  E-value: 5.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIILINPTMTILNLTIYI----IATLTLFLS----LNFASI 110
Cdd:PRK12667  297 ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaIAKSLLFLAsgvfIHAAGT 376

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2720774016 111 TKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRIIY 184
Cdd:PRK12667  377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 39-97 1.39e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 42.23  E-value: 1.39e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIILINPTMTILNLTIYIIA 97
Cdd:TIGR01972 271 VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMIS 329
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 38-189 1.86e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  38 KILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIIILINPTMTILNLTIYII----ATLTLFL-----SLNFA 108
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMvsgsiSYHFG 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016 109 SiTKIKSISNLWNKSTSLTVIILLTLLSLGGLPPLTGFLPKWLILQELVINNNIIMATIMALSALLNLFFYMRIIYATTL 188
Cdd:PRK12662  360 T-TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYF 438


                  .
gi 2720774016 189 T 189
Cdd:PRK12662  439 E 439
ndhB CHL00049
NADH dehydrogenase subunit 2
 2-81 3.98e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 37.68  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016   2 PEVTQGVPLSSGMVLLTWQKIAPTALLYQIS----PSLNMK---ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMG 74
Cdd:CHL00049  238 PDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfYFSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIG 317


                  ....*..
gi 2720774016  75 WMTIIIL 81
Cdd:CHL00049  318 YVIIGII 324
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
39-78 7.00e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 36.95  E-value: 7.00e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTI 78
Cdd:PRK02504  278 LFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMI 317
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 39-80 7.39e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 36.93  E-value: 7.39e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2720774016  39 ILMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGWMTIII 80
Cdd:PRK12561  253 ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 40-203 8.02e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.10  E-value: 8.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016  40 LMTLAIMSTILGGWGGLNQTQLRKILAYSSIAHMGW--MTIIILINPTM--TILNLTIYIIATLTLFLSL-NFASITKIK 114
Cdd:PRK06589  283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALgaAILHLVSHSFAKICLFYSMgSIYSLKKED 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2720774016 115 SISNLWNKSTSLTVIILLTLLSLGGLP---PLTGFLPKWLILQELVINNNIIMATIMAL----SALLNLFFYMRIIYATT 187
Cdd:PRK06589  363 QVDKLHGTSKSFPLISFIISISSLSLIgipIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALYLLKILSSIY 442

                         170
                  ....*....|....*.
gi 2720774016 188 LTTFPTSNNSKLQWPY 203
Cdd:PRK06589  443 KPSLSENSFITKSLPY 458
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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