NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2750818452|gb|XCC52804|]
View 

NADH dehydrogenase subunit 4 (mitochondrion) [Filchnerella nigritibia]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 4.04e-160

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 459.23  E-value: 4.04e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  81 LSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 161 VYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2750818452 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 4.04e-160

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 459.23  E-value: 4.04e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  81 LSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 161 VYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2750818452 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 2.24e-50

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 177.58  E-value: 2.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSVylSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLFIvLAFLIKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaaplPLTAQLLLFLAFF-IAFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------SFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                  ...
gi 2750818452 356 AAP 358
Cdd:COG1008   385 GLP 387
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 4.75e-50

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 171.73  E-value: 4.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFY------FLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssglLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 187 IVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2750818452 346 WWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 1.39e-42

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 156.64  E-value: 1.39e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSVYLSSYHSSIFVFIVLFLMIMlyCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 128 LGWGyQPERLQAGIYLIFYTLVASLPLLL-VLFKVYDCSYTLYFPLLSD----FGSFYFLFYLFiVLAFLIKMPMFLVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAF-FIAFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpsl 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP--- 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2750818452 362 nLLGELSLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 382 -GTSGFVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 4.04e-160

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 459.23  E-value: 4.04e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  81 LSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 161 VYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2750818452 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-443 2.85e-110

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 331.42  E-value: 2.85e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  47 MISWFFGVDYFSFGLILLSFWVCSLMITASSSVYLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLL 126
Cdd:MTH00150   15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 127 ILGWGYQPERLQAGIYLIFYTLVASLPLLLVL---FKVYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLW 203
Cdd:MTH00150   95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVIlwmSSSYGSSFMLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00150  175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 364 LGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFF 443
Cdd:MTH00150  335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-406 2.40e-108

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 327.47  E-value: 2.40e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIF--MIPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYS-DLNMISWFFGVDYFSFGLILLSFWVCSLMITASS 77
Cdd:MTH00014    1 MLKLIMPLISllLLPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSaPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  78 SVYLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 158 LFKVYDCSYTLYFPLLS-DFGSFYF--LFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSSmEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 235 MKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410
                  ....*....|..
gi 2750818452 395 TLYMYSYSQHGS 406
Cdd:MTH00014  401 SLFLYTSTQHGS 412
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 1.27e-106

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 323.08  E-value: 1.27e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVYS-YSDLNMISWFFGVDYFSFGLILLSFWVCSLMITASSSV 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  80 YLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 160 KVYDCSYTLYFPLLSDFGSFYF---LFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFylfLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 237 IISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 317 LSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 2750818452 397 YMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWLPLNILCLKGEYFFF 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-405 5.65e-102

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 311.36  E-value: 5.65e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLI--GNFWWLVHSlmfvvSFFFMIGVYS-------YSDLNMISWFFGVDYFSFGLILLSFWVCSL 71
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLskPKFLWTNTT-----TYSLLIALLSlqwlkppYYPTKNLTQWLGIDQISAPLLVLSCWLLPL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  72 MITASSSVYLSSYHSS--IFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLV 149
Cdd:MTH00124   76 MILASQNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLI 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 150 ASLPLLLVLFKVYDCSYTLYFPLLSDFGSF------YFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:MTH00124  156 SSLPLLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAIL 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 224 LKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCL 303
Cdd:MTH00124  236 LKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMIL 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 304 MIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLT 383
Cdd:MTH00124  316 MIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIIL 395

                         410       420
                  ....*....|....*....|..
gi 2750818452 384 LMFLSFFSAVYTLYMYSYSQHG 405
Cdd:MTH00124  396 TGLATLITASYTLYMFLSTQRG 417
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-405 2.70e-96

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 296.83  E-value: 2.70e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLF---MLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYS-DLNMISWFFGVDYFSFGLILLSFWVCSLMITAS 76
Cdd:MTH00068    1 MLKIIIptlMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSeTMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  77 SSvYLSS---YHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00068   81 QN-HLKNepiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 154 LLLVLFKVYDCSYTLYFPLLSDFGSFYF------LFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00068  160 LLIALLILQNSLGSLSLILLELMSPMQLmtytnkIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 228 GYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00068  240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00068  320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLG 399

                         410
                  ....*....|....*...
gi 2750818452 388 SFFSAVYTLYMYSYSQHG 405
Cdd:MTH00068  400 TLITAAYTLYMFLMTQRG 417
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-406 1.91e-93

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 289.57  E-value: 1.91e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVY-----SYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFllnnhWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  76 SSSV--YLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00044   81 SINHlsNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 154 LLLVLFKVYDCSYTLYFPL------LSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLselnwlTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 228 GYGIFRVMKIISFLGLSF-NYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIG 306
Cdd:MTH00044  241 GYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMF 386
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400

                         410       420
                  ....*....|....*....|
gi 2750818452 387 LSFFSAVYTLYMYSYSQHGS 406
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGS 420
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-422 2.95e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 286.07  E-value: 2.95e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   5 LFMLIFMIPLCLIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISW--FFGVDYFSFGLILLSFWVCSLMITASSSVYLS 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSnlYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  83 SYHS--SIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206   86 EPINrqRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 161 VYDCSYTLYFPLL---SDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKI 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 238 ISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 318 SNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420
                  ....*....|....*....|....*
gi 2750818452 398 MYSYSQHGSYYGGVYTCSLGYIREY 422
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREH 430
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-407 3.28e-90

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 281.01  E-value: 3.28e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWL-----VHSLMFVVSFFFMIGVYSYSDLNMISWFFgVDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  76 SSSVYL--SSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00110   80 SQHHLSkePLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 154 LLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00110  160 LLVALLYIQNNLGSLNFLLLQlwaqplPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 228 GYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00110  240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00110  320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLN 399

                         410       420
                  ....*....|....*....|
gi 2750818452 388 SFFSAVYTLYMYSYSQHGSY 407
Cdd:MTH00110  400 MLITALYSLYMLITTQRGKL 419
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-405 5.44e-81

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 257.58  E-value: 5.44e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWL-----VHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITA 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  76 SSSVYLSSYHSSIFVFIVLF--LMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 154 LLLVLFKVYDCSYTL------YFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 228 GYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410
                  ....*....|....*...
gi 2750818452 388 SFFSAVYTLYMYSYSQHG 405
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRG 418
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 2.24e-50

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 177.58  E-value: 2.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSVylSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLFIvLAFLIKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaaplPLTAQLLLFLAFF-IAFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------SFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                  ...
gi 2750818452 356 AAP 358
Cdd:COG1008   385 GLP 387
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 4.75e-50

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 171.73  E-value: 4.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFY------FLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssglLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 187 IVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2750818452 346 WWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 52-397 4.71e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 163.94  E-value: 4.71e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  52 FGVDYFSFGLILLSFWV--CSLMITASSSVYLSSYhssiFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILG 129
Cdd:MTH00226   98 FAVDGISIYFIILTGFIvpCSILISWHSVKYLTKS----FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 130 WGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDF-----GSFYFLFYLFIVLAFLIKMPMFLVHLWL 204
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL-SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2750818452 364 LGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00226  414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 89-399 1.42e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 162.15  E-value: 1.42e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  89 FVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTL 168
Cdd:MTH00204  114 FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTT 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 169 -YFPLLSDFGSFYFLFYLFI--VLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIsFLGLSF 245
Cdd:MTH00204  194 dYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPL-FPAASE 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 246 NYFWLALGLSGGVVV--SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00204  273 YFAPLIVMLSVIAVIygSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2750818452 324 RLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMY 399
Cdd:MTH00204  353 RHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-344 4.87e-44

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 160.75  E-value: 4.87e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSV---YLSSYHssIFVFIVLFLMIMLYCSFSSLSLlsfYIFFEASLIPTL 124
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEikkRVKFYM--AALLWLEGGVIGVFAALDLLLF---YVFFEAMLIPMY 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 125 LLILGWGYqPERLQAGIYLIFYTLVASLPLLLVLFkvydcsyTLYFPLLSDFGSF---------------YFLFYLFiVL 189
Cdd:PRK05846  149 FLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAF-FI 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 190 AFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL------SFNYFWLALGLSGGVVVSFI 263
Cdd:PRK05846  220 AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFS-----LPLfpdashEFAPIIITLGVIAIIYGALV 294

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSM 343
Cdd:PRK05846  295 ALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVL 374


                  .
gi 2750818452 344 A 344
Cdd:PRK05846  375 A 375
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 1.39e-42

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 156.64  E-value: 1.39e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSVYLSSYHSSIFVFIVLFLMIMlyCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 128 LGWGyQPERLQAGIYLIFYTLVASLPLLL-VLFKVYDCSYTLYFPLLSD----FGSFYFLFYLFiVLAFLIKMPMFLVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAF-FIAFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpsl 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP--- 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2750818452 362 nLLGELSLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 382 -GTSGFVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 89-358 2.89e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 155.60  E-value: 2.89e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  89 FVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYD----C 164
Cdd:MTH00217  111 FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSyagtT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 165 SYTLYFPLLSDFGSFYFLFYLFIvLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGL 243
Cdd:MTH00217  191 DYQALCCLKIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASE 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 244 SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00217  270 YFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2750818452 324 RLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAP 358
Cdd:MTH00217  350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIP 384
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 19-418 1.32e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 141.20  E-value: 1.32e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  19 NFWWLVHSLMFVVSFFFMIgVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITASSSVYLSSYHSSIFVFIVLFLMI 98
Cdd:MTH00094    2 SLLFFFSPFLFFLFLMFFS-FLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  99 MLYcsfsslsLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGS 178
Cdd:MTH00094   81 SSN-------MLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEM 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 179 FYFLfylfiVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLglsFNYFWLALGLSGGV 258
Cdd:MTH00094  154 FFIL-----SLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMI 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 259 VVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:MTH00094  226 LSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFS 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 339 LMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYGGVYTCSLGY 418
Cdd:MTH00094  306 SSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-341 3.22e-33

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 130.92  E-value: 3.22e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSVylsSYHSSIFvfivLFLMIMLYCSFSSLS----LLSFYIFFEASLIPT 123
Cdd:PRK12561   51 LEWSLGVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLF----YFLMLVLYSAQIGVFlaqdLLLFFLMWELELVPV 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 124 LLLILGWGYQpERLQAGIYLIFYTLVASLPLLL--VLFKVYDCSYTLYFPLLS--DF-GSFYFLFYLFIVLAFLIKMPMF 198
Cdd:PRK12561  124 YLLISIWGGQ-KRLYAATKFILYTALASIFILVagLALALSGDTFTFDLAELGakSYpLALELLLYAGFLIAFGVKLPIF 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 199 LVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYS 277
Cdd:PRK12561  203 PLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYS 282

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2750818452 278 SVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK12561  283 SVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 52-359 4.19e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 112.55  E-value: 4.19e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  52 FGVDYFSFGLILLSFWVcSLMITASSSVYLSSYHS-SIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGW 130
Cdd:COG0651    72 LVADRLSALFLLLTALV-ALAVLLYSIGYMRHERRgRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALG 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 131 GYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFY-----FLFYLFIVLAFLIKMPMFLVHLWLP 205
Cdd:COG0651   151 GT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpgllLAAFALLLVGFGIKAALFPLHFWLP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 206 KAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:COG0651   230 DAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2750818452 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:COG0651   310 YILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-358 2.94e-26

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 110.95  E-value: 2.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSVylsSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK02546   79 LTWSVGADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLL 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPL----LSDFG-SFYFLFYLFIVLAFLIKMPMFLVHL 202
Cdd:PRK02546  156 AIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHT 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:PRK02546  235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2750818452 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAP 358
Cdd:PRK02546  315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
 50-393 3.11e-25

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 107.72  E-value: 3.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  50 WFFGVDYFSFGLILLSFWVCSLMITASSSVYLSSYhssifvfIVLFLMIMLYC----SFSSLSLLSFYIFFEASLIPTLL 125
Cdd:CHL00011   78 WRLGIDGLSIGPILLTGFITTLATLAAWPVTRNSR-------LFYFLMLAMYSgqigLFSSRDLLLFFIMWELELIPVYL 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 126 LILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKVydCSY-----TLYFPLLSDFG---SFYFLFYLFIVLAFLIKMPM 197
Cdd:CHL00011  151 LLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGM--GLYgsnepTLNFETLANQSypvALEILFYIGFLIAYAVKLPI 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 198 FLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAY 276
Cdd:CHL00011  228 IPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAY 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 277 SSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMA 356
Cdd:CHL00011  308 SSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLA 387

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2750818452 357 APPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAV 393
Cdd:CHL00011  388 LPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 3.41e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 101.70  E-value: 3.41e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  48 ISWFFGVDYFSFGLILLSFWVCSLMITASSSvylSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSSDE---SIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 128 LGWGYQpERLQAGIYLIFYTLVASLPLL---LVLFKVYDCSYTLYFPLLSDF--GSFYFLFYLFIVLAFLIKMPMFLVHL 202
Cdd:PRK06473  148 AIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRSHTlpLSTQLLLLAPILVGFGIKIPLVPFHT 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFIC-FRQVDLKSLIAYSSVAH 281
Cdd:PRK06473  227 WLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGH 306

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2750818452 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  307 MGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-359 9.48e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 85.32  E-value: 9.48e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSD---FGSFYFLFYLFIVL 189
Cdd:PRK08375  132 FVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalaENPTVVTAFGFVLL 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 190 AFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVM----KIISFLGLSFNYFWLALGLSGGVVVSFICF 265
Cdd:PRK08375  211 ALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAAL 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:PRK08375  291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370

                         250
                  ....*....|....
gi 2750818452 346 WWFLLSSSNMAAPP 359
Cdd:PRK08375  371 AFAVASLSLIGVPP 384
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
113-357 2.95e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 83.99  E-value: 2.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKV----------YDCSYTLYFPLlsdfgSFYFL 182
Cdd:PRK07363  133 FLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgstsfdYDAISTQNLSL-----NTQLI 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 183 FYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkiisfLGL---SFNYFWLALGLSGGVV 259
Cdd:PRK07363  207 LLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTIS 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 260 V---SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGM 336
Cdd:PRK07363  282 ViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGL 361

                         250       260
                  ....*....|....*....|.
gi 2750818452 337 INLMPSMALWWFLLSSSNMAA 357
Cdd:PRK07363  362 MNPIRGLPLTSALLVLAGMAS 382
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 16-343 6.61e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 82.28  E-value: 6.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  16 LIGNFWWLVHSLMFVVSFFFMIGV--YSYSDLNMISWFFGVDYFSFGLILLSfwvcsLMITASSSVYLSSYHSSIFVFIV 93
Cdd:MTH00062    3 FFSVGFFLGFLLLLLFCLLYSSGVgcCILVVNNVFNGLFIFDSLSFYLILLV-----LFLGLYSQVMFYNLLSGVSRFFL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  94 LFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLL 173
Cdd:MTH00062   78 FLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDW 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 174 SDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRvmkIISFLGLSFNYFWLALG 253
Cdd:MTH00062  158 GSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYR---FCGFIFSGSFLGYLFLC 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 254 LSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:MTH00062  235 CLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLL 314

                         330
                  ....*....|
gi 2750818452 334 KGMINLMPSM 343
Cdd:MTH00062  315 KSGINGSLVL 324
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-359 8.69e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 79.24  E-value: 8.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 144 IFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK12667  186 FLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLV 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 224 LKLGGYGIFRVMKIISFLGLSFNYFWLA-------LGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWG 296
Cdd:PRK12667  266 VNVGAYAIIRFLYTIFGISPSLIDFRAAlspiliiLGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2750818452 297 CMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12667  346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPP 408
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-352 4.62e-15

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 76.89  E-value: 4.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 186 FIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIS-FLGLSF-NYFWLALGLSGGVVVSFI 263
Cdd:PRK06458  219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAAFF 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSM 343
Cdd:PRK06458  299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLT 378


                  ....*....
gi 2750818452 344 AlWWFLLSS 352
Cdd:PRK06458  379 G-WGLMLGA 386
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 16-341 3.26e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.57  E-value: 3.26e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  16 LIGNFWWLVHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITASssVYLSSYHSSIFVFIVLF 95
Cdd:PRK08668   29 VIGNALPLLFLIKLYFTLKVGTGEKLTLFFGGFKLTFTLTHLSWFFAMISLLVIFSVAFFM--VSEKTKNDAYFNMFALM 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  96 LMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILgWGYQPERLQAGIYLIFyTLVASLPLLLVLFKVYDCSYTLYFPLLSD 175
Cdd:PRK08668  107 SLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFADISQ 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 176 F------GSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGL------ 243
Cdd:PRK08668  185 GlindtsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgt 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 244 -----SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS 318
Cdd:PRK08668  265 yrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIF 344

                         330       340
                  ....*....|....*....|...
gi 2750818452 319 NIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK08668  345 AAVIYRTGTTKISEMGGLIEKMP 367
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 2.41e-12

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 63.31  E-value: 2.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452   1 MLKYLFMLIFMIPLCLIGNFWWL-----VHSLMFVVSFFFMIGVYSYSDLNMISWFFGVDYFSFGLILLSFWVCSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100
                  ....*....|....*....|....*....
gi 2750818452  76 SSSVYLSS--YHSSIFVFIVLFLMIMLYC 102
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIFLLILLQLFLIL 109
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-324 3.95e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 67.67  E-value: 3.95e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFylfIVLAFL 192
Cdd:PRK07234  120 YVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFAL---IALGLL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGgvvvSFICFRQVDLKS 272
Cdd:PRK07234  196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKR 271

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2750818452 273 LIAYSSVAHMSMVIGGlmtmnwwGCMGSLcLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234  272 MLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 114-359 1.47e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 66.29  E-value: 1.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 114 IFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLI 193
Cdd:PRK08667  138 FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGI 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 194 KMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSL 273
Cdd:PRK08667  218 KAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGL 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 274 IAYSSVAHMSMVIGGLMTMNWWGCMG--SLCLM---------IGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPS 342
Cdd:PRK08667  298 LAYSSIENIGIILMGIGLYVIFGVYGldTLALLalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPY 377

                         250
                  ....*....|....*..
gi 2750818452 343 MALWWFLLSSSNMAAPP 359
Cdd:PRK08667  378 TSALFLVGAVSIAALPP 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 178-327 2.25e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 65.55  E-value: 2.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 178 SFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII--SFLGLSFNYFWLALGLS 255
Cdd:PRK08676  203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2750818452 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK08676  283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-395 1.35e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 60.13  E-value: 1.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 185 LFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKII-----SFLGLSFNYFWLALGLSGGVV 259
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 260 VSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK12662  293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2750818452 340 MPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSII-SWSSLSFLTLMFLSFFSAVYT 395
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK12646 PRK12646
DUF4040 family protein;
80-359 1.46e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 60.15  E-value: 1.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  80 YLSSYHSSI---FVFIVLFLMIMLyCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLL 156
Cdd:PRK12646  101 YLSSRKDNLprfYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 157 VLFKVYDCSYTLYFPLL-------SDFGSFYFLFYLFIVLAFlIKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGg 228
Cdd:PRK12646  180 GFIMLYIMTGTNNITEIlgqadhiKNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAG- 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 229 ygIFRVMKIISFLGLSFNYFWLA--LGLSGGVVVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSL 301
Cdd:PRK12646  257 --IFLLFRFTPLLGLSNMYIYIVtfVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASI 334

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2750818452 302 CLMI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALwWFLLSSSNMAAPP 359
Cdd:PRK12646  335 YVFVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVP 400
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-349 3.10e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.83  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLiLGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS------DFGSFYFLFYLF 186
Cdd:PRK12665  137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAvrldelPSGTRTALFAVL 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 187 IVlAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIIsFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:PRK12665  216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALW 346
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373


                  ...
gi 2750818452 347 WFL 349
Cdd:PRK12665  374 FFV 376
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-359 2.05e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 53.23  E-value: 2.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 187 IVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYFWL--ALGLSGGVVVSFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                         170
                  ....*....|....*
gi 2750818452 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377  372 LALTIGALSTVGIPL 386
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 182-359 2.12e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 53.35  E-value: 2.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 182 LFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkIISFLG---LSFNYFWLALGLSG-- 256
Cdd:PRK06521  211 LVFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISav 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 257 -GVVVSFIcfrQVDLKSLIAYSSVAHM---SMVIG--------GLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK06521  289 lGVLYALA---EHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHA 365

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2750818452 325 LGSRSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK06521  366 TGTRDMEKLGGLIRRMPWTA-WAFLIGCLAISALP 399
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 61-359 1.64e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.20  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  61 LILLSF-WVCSLMITASSSVYLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLIlGWGYQPERLQA 139
Cdd:PRK06589   89 LLLIGFlWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLSG 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 140 GI-YLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAHVEAPISGSMI 218
Cdd:PRK06589  168 GYkYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALL 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 219 LAGVLLKLGGYGIFRV------MKIISFLGLSFNYFWLALGLSgGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM 292
Cdd:PRK06589  248 HAVIVVKTGLFCIYKIllyifgLSYLQRIFAEFNWLIFIPIVS-IFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2750818452 293 NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06589  327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPI 393
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-341 1.97e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.10  E-value: 1.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLFIVLAFL 192
Cdd:PRK08376  147 FVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 193 I-----KMPMFLVHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVmkiisflglSFNYFWLALGLS--GGVVVSFIC 264
Cdd:PRK08376  227 IaglamKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV---------LFSIYGPAINLAtvGWVIIILGC 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 265 FR----------QVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLCLMIGHGLCSSGLFCLSNIIY 322
Cdd:PRK08376  296 LTmfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVI 375

                         250
                  ....*....|....*....
gi 2750818452 323 ERLGSRSLLINKGMINLMP 341
Cdd:PRK08376  376 YETGTRNLNELGGLARTMP 394
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 52-359 1.51e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.17  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  52 FGVDYFSFGLILLSFWVCSLMITASSSVYLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWG 131
Cdd:PRK07691   73 FVADMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 132 YQPErLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS---------DFGSFYFLFYLFIVLaFLIKMPMFLVHL 202
Cdd:PRK07691  153 TKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLFPLYF 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKIISFLGLSFNYfwLALGLSGGVVVSFICF---RQVDLKSLIAYSSV 279
Cdd:PRK07691  231 WLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTH--YLILILALLTIIFGVIgavAYFDIKKIIIYNIM 308

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 280 AHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK07691  309 IAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGIP 387
PRK12650 PRK12650
DUF4040 family protein;
188-359 6.95e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 6.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 188 VLAFLI------KMPMFLVHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKIisflglsFNYFWLALGLS 255
Cdd:PRK12650  209 VVAVLIavaaftKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMI 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12650  282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361

                         170       180
                  ....*....|....*....|....
gi 2750818452 336 MINLMPsMALWWFLLSSSNMAAPP 359
Cdd:PRK12650  362 LWRRMP-FTFVSVTIAALSMAAVP 384
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-359 1.39e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLS-------DFGSFYFLFYL 185
Cdd:PRK12663  134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAmrlndmgDTATLTTIALL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 186 FIvLAFLIKMPMFLVHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVM--------KIISFLGLSFNYFWLALGLSGG 257
Cdd:PRK12663  213 FL-LAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFtllfpqerELLHPLLATMAAITMVIGALGA 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 258 VVvsficfrQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMI 337
Cdd:PRK12663  291 LA-------YKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLY 363

                         250       260
                  ....*....|....*....|..
gi 2750818452 338 NLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12663  364 RKEPLFGALFLILIFAIGGLPP 385
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-359 1.60e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.97  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkIISFLGLSFNYFWLALGLSGGVVVSFI----CFRQVDLKSLIA 275
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 276 YSSVAHMSMVIGGL-----------MTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08042  275 YHTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 354

                         170
                  ....*....|....*
gi 2750818452 345 LwWFLLSSSNMAAPP 359
Cdd:PRK08042  355 I-AMLVGLMAMAALP 368
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 52-359 1.62e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.06  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  52 FGVDyFSFGLILLSFwVCSLMIT-------ASSSVYLSSYH--SSIFVFIVLFLMIMLyCSFSSLSLLSFYIFFEASLIP 122
Cdd:PRK12647   54 LGVN-LSFLLDGLSL-TFALLITgigtlivLYAGGYLKGHPdlGRFYSYILLFMASML-GLVLSDNLITLFVFWELTSIT 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 123 TLLLIlgwGYQPER-------LQAgiylIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDFG------SFYFLFYLFIVL 189
Cdd:PRK12647  131 SFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehPLYLAILLLVLG 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 190 AFLIKMPMFLVHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKIISFLGLSFNYFWLaLGLSGG---VV 259
Cdd:PRK12647  204 GAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI-LPLFGGltmLT 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 260 VSFICFRQVDLKSLIAYSSVahmsMVIGGLMTMNWWGC----MGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12647  273 GALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGSelaiKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGG 348

                         330       340
                  ....*....|....*....|....
gi 2750818452 336 MINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12647  349 LRRAMPITAAAALLAALSMAGLPP 372
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 134-359 2.13e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 40.34  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 134 PERLQAGIYLIFYTLVASLPLLLVLFKVYDCSYTLYFPLLSDF-GSFYFLFYLFIVLAFLIKMPMFLVHLWLPKAhVEAP 212
Cdd:PRK06525  159 PKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLhGSLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 213 ISGSMIL-AGVLLKLGGYGIFRVMKIISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMT 291
Cdd:PRK06525  238 TPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSL 317

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2750818452 292 M---NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06525  318 AilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPP 388
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 113-292 6.63e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.04  E-value: 6.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYT------LVASLPLLLVLFKVYDCSYTLYFPLLSDFGSFYFLFYLF 186
Cdd:PRK12649  137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITaggglfMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLIT 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 187 IVLAFL---IKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKIisflgLSFNYFWLAL----GLSGGV 258
Cdd:PRK12649  217 LILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPI-----FSGTEAWFILvsgtGMITMV 290

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2750818452 259 VVSFICFRQVDLKSLIAYSSVAHMSMviggLMTM 292
Cdd:PRK12649  291 LAGFLAFRQTDIKAILAYSTISQLAY----LMTM 320
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 61-285 9.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 38.22  E-value: 9.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452  61 LILLSFWVCSLMITASSSV-YLSSYHSSIFVFIVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQA 139
Cdd:PRK06591   88 LVLLFFLVFCHKITNQTILkYINNNRKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGA 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2750818452 140 GIYLIFYTLVASLPLLLVLF--------KVYDCSYTLYFPLLSDFGSFYFLFYLfivLAFLIKMPMFLVHLWLPKAHVEA 211
Cdd:PRK06591  168 FDYLIMGSIGATLILIAIGFllsitgslNMTDIAAYLQEHTNSRIITIAIGFFL---IGAILKTAFFPMHFWMMRAYNNT 244

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2750818452 212 PISGSMILAGVLLKLGGYGIFRVMKII---SFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMV 285
Cdd:PRK06591  245 ASVILVYLAGISTIIGIYIIYKFTYIIigyETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYV 321
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH