gypsy retrotransposon integrase-like protein 1 isoform X1 [Mus musculus]
Protein Classification
transposase family protein( domain architecture ID 229386)
transposase family protein may bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| rve super family | cl47583 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
76-132 | 5.52e-04 | ||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. The actual alignment was detected with superfamily member pfam00665: Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 39.22 E-value: 5.52e-04
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| Name | Accession | Description | Interval | E-value | ||
| rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
76-132 | 5.52e-04 | ||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 39.22 E-value: 5.52e-04
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| Name | Accession | Description | Interval | E-value | ||
| rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
76-132 | 5.52e-04 | ||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 39.22 E-value: 5.52e-04
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