|
Name |
Accession |
Description |
Interval |
E-value |
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
395-459 |
6.15e-23 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 93.87 E-value: 6.15e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694834822 395 PLKLRRMRPSQPLTLDTLCDWDAGEVQLTRGDKYTLKDNSNPEMWVVQSSTGVVQEAPSACFSIP 459
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDREKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
866-1646 |
2.96e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 2.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 866 KQQLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENK-AATSRESEGLKSQLEEERRKVAKIEEDLEEHRNKLLMLKTQkp 944
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEElEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE-- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 945 IERVEEKEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEITKIE---KDPS 1021
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEElesRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1022 LDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREkvvvkELIKLEKNPEMLKsVRTLQLQIDEEtfkrk 1101
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ-----EIEELLKKLEEAE-LKELQAELEEL----- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1102 saEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEERS-------------KNLTLTGELG 1168
Cdd:TIGR02168 446 --EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENlegfsegvkallkNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1169 ELQSQYSIAEKQKPRIEV--KERVNEIFLVDPET-EQQIAHLKRE-------LQEVTLKRTKIESEVEEALAELNALRSQ 1238
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEAalGGRLQAVVVENLNAaKKAIAFLKQNelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1239 kpvveLKEVIEEVIKHEKSPEIL----REIDRLKQQLNELVNTNGRtqEQLIRLQGERDEWK----RERSKVETKLVNKE 1310
Cdd:TIGR02168 604 -----AKDLVKFDPKLRKALSYLlggvLVVDDLDNALELAKKLRPG--YRIVTLDGDLVRPGgvitGGSAKTNSSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1311 viryendplleKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLErrkpeekvvvqeviltQKDPKLRDEHNRLSRSLD 1390
Cdd:TIGR02168 677 -----------REIEELEEKIEELEEKIAELEKALAELRKELEELE----------------EELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1391 EEVSNRRRLERDVQQLRALVEEQEKLLSFQEDrsKRLALEKEMRQTTLRIKELEESPAPVQEKIimeEVVKLEKDpVLEQ 1470
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEA--EIEELEERLEEAEEELAEAEAEIEELEAQI---EQLKEELK-ALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1471 SASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKT----KSQEKTIYKEVIRVEKDRA-LESERARIWELLNRERGAKQ 1545
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRledlEEQIEELSEDIESLAAEIEeLEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1546 KAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQKVLFLREESKLLnqrTENDRQKK 1625
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT---LEEAEALE 960
|
810 820
....*....|....*....|.
gi 694834822 1626 KQLEHEFSLLEADILREKDQI 1646
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
780-1560 |
8.81e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 8.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 780 KLQAQKRLVEE-IESKEPEKNAVVRLS-----------RNVQSTLNDYELQAGKYSSSLDPTLTDFAAKRLRVTPLQESI 847
Cdd:TIGR02168 204 SLERQAEKAERyKELKAELRELELALLvlrleelreelEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 848 QAQENDVTKLYMELAA--ENKQQLS-RLEFAKKivEKKEVHEDIEAVHKQAQ-QSENKAATSRESEGLKSQLEEERRKVA 923
Cdd:TIGR02168 284 EELQKELYALANEISRleQQKQILReRLANLER--QLEELEAQLEELESKLDeLAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 924 KIEEDLEEHRNKLLMLKTQkpIERVEEKEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAqmESEKKV 1003
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQ--LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1004 IPAQLLTKEI---TKIEKDPSLDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREK-VVVKELIKLEKN 1079
Cdd:TIGR02168 438 LQAELEELEEeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1080 PEMLKSVRTLQLQIDE------ETFKRKSAEEAIVKVKNK-IEEVERLIETAEPKIIVKEVKQV------EQDPELLRES 1146
Cdd:TIGR02168 518 LSGILGVLSELISVDEgyeaaiEAALGGRLQAVVVENLNAaKKAIAFLKQNELGRVTFLPLDSIkgteiqGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1147 SKLKTLIEEERSKNLTLTGELGELQSQYSIAE--KQKPRIEVKERVNEIFLV---------------DPETEQQIAHLKR 1209
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDdlDNALELAKKLRPGYRIVTldgdlvrpggvitggSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1210 ELQEVTLKRTKIESEVEEALAELNALRSQkpVVELKEVIEEVIKheKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQ 1289
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKE--LEELEEELEQLRK--ELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1290 GERDEWKRERSKVETKLVNKEVIRYEndplLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRkpeekvvVQEV 1369
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAE----AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE-------AANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1370 ILTQKDpkLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSfqEDRSKRLALEKEMRQTTLRIKELEEspap 1449
Cdd:TIGR02168 823 RERLES--LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE--ELESELEALLNERASLEEALALLRS---- 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1450 vQEKIIMEEVVKLEKdpvlEQSASNLRLELDREKMEVLNLQREckNLQMQVDVLQKTKSQE-KTIYKEVIRVEKDRALES 1528
Cdd:TIGR02168 895 -ELEELSEELRELES----KRSELRRELEELREKLAQLELRLE--GLEVRIDNLQERLSEEySLTLEEAEALENKIEDDE 967
|
810 820 830
....*....|....*....|....*....|..
gi 694834822 1529 ErariwellnrergakqKAEEEVRRLREKIER 1560
Cdd:TIGR02168 968 E----------------EARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
773-1627 |
7.05e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 87.43 E-value: 7.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 773 GPSQINYKLQAQKRLVEEIESKEPEKNAVVRLSRNVQSTLNDYELQAGKYSSsLDPTLTDFAAKRL--RVTPLQESIQAQ 850
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-LLKEKREYEGYELlkEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 851 ENDVTKLYMELAaenKQQLSRLEFAKKIVEKKEVHEDIEAvhkqaqqsENKAATSRESEGLKSQLEEERRKVAKIEEDLE 930
Cdd:TIGR02169 243 ERQLASLEEELE---KLTEEISELEKRLEEIEQLLEELNK--------KIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 931 EHRNKLlmlktqkpiERVEEKEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKL------AQMESEKKVI 1004
Cdd:TIGR02169 312 EKEREL---------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELedlraeLEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1005 PAQLLTKEITKIEKdpsLDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVVVKELiKLEKNPEMLK 1084
Cdd:TIGR02169 383 TRDELKDYREKLEK---LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL-EIKKQEWKLE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1085 SVRTlqlqideetfKRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEvKQVEQDPELLRESSKLKTLIEEERSKNLTLT 1164
Cdd:TIGR02169 459 QLAA----------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE-AQARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1165 GELGELQSQYSIAekqkprIEVK--ERVNEIFLVDPETEQQ-IAHLKRE----LQEVTLKRTKIESEVEEALAELNALRS 1237
Cdd:TIGR02169 528 AQLGSVGERYATA------IEVAagNRLNNVVVEDDAVAKEaIELLKRRkagrATFLPLNKMRDERRDLSILSEDGVIGF 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1238 QKPVVELKEVIEEVIKH-------------------------------EKS-----------------PEILREIDRLKQ 1269
Cdd:TIGR02169 602 AVDLVEFDPKYEPAFKYvfgdtlvvedieaarrlmgkyrmvtlegelfEKSgamtggsraprggilfsRSEPAELQRLRE 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1270 QLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYEndplLEKEADRLRQEVRNMSQKRRAAEDAIYDLQ 1349
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1350 NKYMLLERRKPEEKVVVQEVILTQKDPKLRDEHNRLSRSLDEevsnRRRLERDVQQLRALVEEQEKLLsfQEDRSKRLAL 1429
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE----LSKLEEEVSRIEARLREIEQKL--NRLTLEKEYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1430 EKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLEKDPVLEQSASNLRlELDREKMevlNLQRECKNLQMQVDVLQKTKSQ 1509
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLG---DLKKERDELEAQLRELERKIEE 907
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1510 EKTiykEVIRVEKDRALESERARIWELLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANL 1589
Cdd:TIGR02169 908 LEA---QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEV 984
|
890 900 910
....*....|....*....|....*....|....*...
gi 694834822 1590 ESELRELERQKQQkvlfLREESKLLNQRTENDRQKKKQ 1627
Cdd:TIGR02169 985 LKRLDELKEKRAK----LEEERKAILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
875-1454 |
7.85e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.30 E-value: 7.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 875 AKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLEEERRKVAKIEEDLEEHRNKLLMLKtqkpiERVEEKEVI 954
Cdd:COG1196 215 YRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-----LELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 955 EYyrdpQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEITKIEKDPSLDSQAASLRQEIK 1034
Cdd:COG1196 290 EY----ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1035 RLQEESLAAASKLEQCKRELHVLERKQPNIREKvvvkelikleknpemLKSVRTLQLQIDEETFKRKSAEEAIVKVKNKI 1114
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAEL---------------AAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1115 EEVERLIETAEpkiiVKEVKQVEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEIF 1194
Cdd:COG1196 431 AELEEEEEEEE----EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1195 LVDPETEQQIAHLKRELQEVTLKRTKiESEVEEALAELNALRSQKPVVELKEVIEEVIKHEKSPEILR----EIDRLKQQ 1270
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGV-EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1271 LNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQN 1350
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1351 KYMLLERRKPEEKVVVQEVILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALE 1430
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
570 580
....*....|....*....|....
gi 694834822 1431 KEMRQTTLRIKELEESPAPVQEKI 1454
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELEREL 769
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
911-1687 |
1.14e-16 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 86.95 E-value: 1.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 911 LKSQLEEERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIEYYRdpqvESNLSKMAQQIEEEGKKRQSLQEDIEVm 990
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ----LKEKLELEEEYLLYLDYLKLNEERIDL- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 991 SQKLAQMESEKKVIPAQLLTKEITKIEKDPSLDSQAAslrQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVVV 1070
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE---KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1071 --KELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAEEAIVKvknKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSK 1148
Cdd:pfam02463 319 seKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE---ELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1149 LKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEA 1228
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1229 LAELNALRSQKpvVELKEVIEEVIKHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDE----WKRERSKVET 1304
Cdd:pfam02463 476 ETQLVKLQEQL--ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEnykvAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1305 KLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILTQKDPKLRDEHNR 1384
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1385 LSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEESPApvQEKIIMEEVVKLEK 1464
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR--QLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1465 DPVLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVI---RVEKDRALESERARIWELLNRER 1541
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEkseLSLKEKELAEEREKTEKLKVEEE 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1542 GAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKarnLAIQERANLESELRELERQKQQKVLFLREESKLLNQRTEND 1621
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQE---EKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694834822 1622 RQKKKQLEHEFSLLEA-DILREKDQIYNKERLIRDLQSRVNREEINHETQMRETNLSTKISILDPET 1687
Cdd:pfam02463 869 LQELLLKEEELEEQKLkDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1104-1673 |
5.15e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 5.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1104 EEA--IVKVKNKIEEVERLIETAEPKI-----IVKEV-KQVEQdpeLLRESSKL---KTLIEEERSKNLTLTG-ELGELQ 1171
Cdd:COG1196 162 EEAagISKYKERKEEAERKLEATEENLerledILGELeRQLEP---LERQAEKAeryRELKEELKELEAELLLlKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1172 SQYSIAEKQKPRIEVKERvneiflvdpETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEV 1251
Cdd:COG1196 239 AELEELEAELEELEAELE---------ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1252 IKHEKSPEILR---EIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYENDPLLEKEADRLR 1328
Cdd:COG1196 310 RRRELEERLEEleeELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1329 QEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILTQKDP-----KLRDEHNRLSRSLDEEVSNRRRLERDV 1403
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEeeeeeALEEAAEEEAELEEEEEALLELLAELL 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1404 QQLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTL------RIKELEESPAPVQEKIIMEEVVKLEKDPVLEQSASNLRL 1477
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1478 ELDREKMEVLnlqRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRALESERARI-WELLNRERGAKQKAEEEVRRLRE 1556
Cdd:COG1196 550 NIVVEDDEVA---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlVASDLREADARYYVLGDTLLGRT 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1557 KIERAEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQKVLFLREESKLLNQRTENDRQKKKQLEHEFSLLE 1636
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
570 580 590
....*....|....*....|....*....|....*..
gi 694834822 1637 ADILREKDQIYNKERLIRDLQSRVNREEINHETQMRE 1673
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1099-1639 |
2.56e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1099 KRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEERSknltLTGELGELQSQYSIAE 1178
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1179 KQkpRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQkpVVELKEVIEEVIKHEKsp 1258
Cdd:COG1196 309 ER--RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA--LLEAEAELAEAEEELE-- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1259 EILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYE-NDPLLEKEADRLRQEVRNMSQK 1337
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEeEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1338 RRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILTQ------------KDPKLRDEHNRLSRSLDEEVSNRRRLERDVQ- 1404
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaeadyegflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1405 ----QLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLEKDPVLEqsasNLRLELD 1480
Cdd:COG1196 543 alaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA----DARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1481 REKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRALESERARIWELLNRERgAKQKAEEEVRRLREKIER 1560
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA-ELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694834822 1561 AEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQKVLFLREESKLLNQRTENDRQKKKQLEHEFSLLEADI 1639
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1045-1696 |
3.16e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.04 E-value: 3.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1045 SKLEQCKRELHVLERKQPNIR--EKVVVKELIKLEKNPEMLKSVRTLQLQIDEETF-----KRKSAEEAIVKVKNKIEEV 1117
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDliIDEKRQQLERLRREREKAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1118 ERLIETAEPKI--IVKEVKQVEQDpeLLRESSKLKTLIEEERsknLTLTGELGELQSQY-----SIAEKQKPRIEVKERV 1190
Cdd:TIGR02169 250 EEELEKLTEEIseLEKRLEEIEQL--LEELNKKIKDLGEEEQ---LRVKEKIGELEAEIaslerSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1191 NEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSqkpvvELKEVIEEV-IKHEKSPEILREIDRLKQ 1269
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-----ELEEVDKEFaETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1270 QLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLV----NKEVIRYE------NDPLLEKEADRLRQEVRNMSQKRR 1339
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleeEKEDKALEikkqewKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1340 AAEDAIYDLQNKYMLLE------RRKPEEKVVVQEVI---------LTQKDPKLRDEH---------NRLSRSL--DEEV 1393
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEaqarasEERVRGGRAVEEVLkasiqgvhgTVAQLGSVGERYataievaagNRLNNVVveDDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1394 SNR---------------------RRLERDVQQLRA---------LVEEQEK------------LLSFQEDRSKRLALEK 1431
Cdd:TIGR02169 560 AKEaiellkrrkagratflplnkmRDERRDLSILSEdgvigfavdLVEFDPKyepafkyvfgdtLVVEDIEAARRLMGKY 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1432 EM---------------------RQTTLRIKELEESPAPVQEKI---------IMEEVVKLEKD--------PVLEQSAS 1473
Cdd:TIGR02169 640 RMvtlegelfeksgamtggsrapRGGILFSRSEPAELQRLRERLeglkrelssLQSELRRIENRldelsqelSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1474 NLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRV--EKDRALESERARIWELLNRERGAK-QKAEEE 1550
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARieELEEDLHKLEEALNDLEARLSHSRiPEIQAE 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1551 VRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLESELRELERQK---QQKVLFLREESKLLNQRTENDRQKKKQ 1627
Cdd:TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIksiEKEIENLNGKKEELEEELEELEAALRD 879
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1628 LEHEFSLLEADILREKDQIYNKERLIRDLQSRVNREEIN-HETQMRETNLSTKISILDPETGKDMSPYEA 1696
Cdd:TIGR02169 880 LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRlSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
897-1631 |
3.78e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.11 E-value: 3.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 897 QSENKAATSRESEGLKSQLEEERRKVAKIEEDleehRNKLLMLKTQKPIERVEEKEVIEYYRDPQvESNLSKMAQQIEEE 976
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEA----RKAEEAKKKAEDARKAEEARKAEDARKAE-EARKAEDAKRVEIA 1157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 977 GKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLlTKEITKIEKdpSLDSQAASLRQEIKRLQEESLAA-ASKLEQCKRELH 1055
Cdd:PTZ00121 1158 RKAEDARKAEEARKAEDAKKAEAARKAEEVRK-AEELRKAED--ARKAEAARKAEEERKAEEARKAEdAKKAEAVKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1056 VLERKQPNIR-EKVVVKELIKLEKNPEMLKSVRTLQLQIDEEtfKRKSAEEAIVKVKNKIEEVERLIEtaepkiiVKEVK 1134
Cdd:PTZ00121 1235 AKKDAEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEE--ARKADELKKAEEKKKADEAKKAEE-------KKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1135 QVEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIA----EKQKPRIEVKERVNEIFLVDPETEQQIAHLKRE 1210
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAkaeaEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1211 LQEVTLKRTKIESEVEEALAELNALR----SQKPVVELKEVIEEVIKHE---KSPEILREIDRLKQQLNElvntnGRTQE 1283
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKkaaaAKKKADEAKKKAEEKKKADeakKKAEEAKKADEAKKKAEE-----AKKAE 1460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1284 QLIRLQGERDEWKRERSKVETKLVNKEVIRYENDPllEKEADRLRQ---------EVRNMSQKRRAAEdaIYDLQNKYML 1354
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA--KKKADEAKKaaeakkkadEAKKAEEAKKADE--AKKAEEAKKA 1536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1355 LERRKPEEKVVVQEViltQKDPKLRD-EHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQekllsfQEDRSKRLALEKEM 1433
Cdd:PTZ00121 1537 DEAKKAEEKKKADEL---KKAEELKKaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR------IEEVMKLYEEEKKM 1607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1434 RQTTLRIKEleespapvQEKIIMEEVVKLEKDpvlEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTi 1513
Cdd:PTZ00121 1608 KAEEAKKAE--------EAKIKAEELKKAEEE---KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK- 1675
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1514 ykeviRVEKDRALESERARIWELLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLESEL 1593
Cdd:PTZ00121 1676 -----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
730 740 750
....*....|....*....|....*....|....*...
gi 694834822 1594 RELERQKQQKVLFLREESKLLNQRTENDRQKKKQLEHE 1631
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
965-1673 |
4.24e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 4.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 965 NLSKMAQQIEEEGKKRQSLQEDIEVmSQKLAQMESEKKVIPAQLLTKEIT-KIEKDPSLDSQAASLRQEIKRLQEESLAA 1043
Cdd:TIGR02168 187 NLDRLEDILNELERQLKSLERQAEK-AERYKELKAELRELELALLVLRLEeLREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1044 ASKLEQCKRELHVLERKQPNIREKV--VVKELIKLEKNPEMLK--------SVRTLQLQIDEETFKRKSAEEAIVKVKNK 1113
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELyaLANEISRLEQQKQILRerlanlerQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1114 IEEVERLIETAEPKIIVKEVKQveqdPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERvnei 1193
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAEL----EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE---- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1194 flvdpETEQQIAHLKRELQEVTLKrtKIESEVEEALAELNALRSQKP-VVELKEVIEEVIKhekspEILREIDRLKQQLN 1272
Cdd:TIGR02168 418 -----RLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELErLEEALEELREELE-----EAEQALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1273 ELVNTNGRTQEQLIRLQGERD---EWKRERSKVETKL-VNKEVIRYENDPLLEKEA---DRLRQ-EVRNMSQKRRAAE-- 1342
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEgvkALLKNQSGLSGILgVLSELISVDEGYEAAIEAalgGRLQAvVVENLNAAKKAIAfl 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1343 -------------DAIYDLQNKYMLLERRKPEEKVVVQEVILTQKDPKLRD------EHNRLSRSLDEEVSNRRRLERDV 1403
Cdd:TIGR02168 566 kqnelgrvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllGGVLVVDDLDNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1404 qqlrALVEEQEKLLS--------FQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKIIMeevvklekdpvLEQSASNL 1475
Cdd:TIGR02168 646 ----RIVTLDGDLVRpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE-----------LRKELEEL 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1476 RLELDREKMEVLNLQRECKNLQMQVDVLQKTksqEKTIYKEVIRVEKDRA-LESERARIWELLNRERGAKQKAEEEVRRL 1554
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAE---VEQLEERIAQLSKELTeLEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1555 REKIERAEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQKvlflREESKLLNQRTENDRQKKKQLEHEFSL 1634
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT----ERRLEDLEEQIEELSEDIESLAAEIEE 863
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 694834822 1635 LEADI----------LREKDQIYNKERLIRDLQSRVNREEINHETQMRE 1673
Cdd:TIGR02168 864 LEELIeeleselealLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1031-1665 |
4.61e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1031 QEIKRLQEESlAAASKLEQCKRE-LHVLERKQPN-IREKVVVKELIK----LEKNPEMLKSVRTL-----QLQIDEETFK 1099
Cdd:TIGR02168 155 EERRAIFEEA-AGISKYKERRKEtERKLERTRENlDRLEDILNELERqlksLERQAEKAERYKELkaelrELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1100 RKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEvkqvEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEK 1179
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELE----EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1180 QKPRIEVK-ERVNEIFLvdpETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEV-IEEVIKHEKS 1257
Cdd:TIGR02168 310 RLANLERQlEELEAQLE---ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEeLEEQLETLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1258 peilrEIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYEND-PLLEKEADRLRQEVRNMSQ 1336
Cdd:TIGR02168 387 -----KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1337 KRRAAEDAIYDLQNKYMLLERrkpEEKVVVQEVILTQKdpkLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEK- 1415
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAER---ELAQLQARLDSLER---LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGy 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1416 -----------------------LLSFQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKI-----IMEEVVKLEKD-- 1465
Cdd:TIGR02168 536 eaaieaalggrlqavvvenlnaaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIegflgVAKDLVKFDPKlr 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1466 PVLE------------QSASNLRLELDREKMEV------------------------LNLQRECKNLQMQVDVLQktkSQ 1509
Cdd:TIGR02168 616 KALSyllggvlvvddlDNALELAKKLRPGYRIVtldgdlvrpggvitggsaktnssiLERRREIEELEEKIEELE---EK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1510 EKTIYKEVIRVEKD-RALESERARIWELLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERAN 1588
Cdd:TIGR02168 693 IAELEKALAELRKElEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1589 LESELRELERQK---QQKVLFLREESKLLNQRTENDRQKKKQLEHEFSLLEADILREKDQIYNKERLIRDL--QSRVNRE 1663
Cdd:TIGR02168 773 AEEELAEAEAEIeelEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLeeQIEELSE 852
|
..
gi 694834822 1664 EI 1665
Cdd:TIGR02168 853 DI 854
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
998-1613 |
1.75e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 79.34 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 998 ESEKKVIpaqlltKEITKIEKDPSLDSQAASLRQEIKRLQE--ESLAAAS------------KLEQCKRELHVLERKQPN 1063
Cdd:PRK03918 145 ESREKVV------RQILGLDDYENAYKNLGEVIKEIKRRIErlEKFIKRTenieelikekekELEEVLREINEISSELPE 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1064 IREKV--VVKELIKLEKNPEMLKSvrtLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKiiVKEVKQVEQDPE 1141
Cdd:PRK03918 219 LREELekLEKEVKELEELKEEIEE---LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--VKELKELKEKAE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1142 llrESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEiflvdpETEQQIAHLKRELQEVTlKRTKI 1221
Cdd:PRK03918 294 ---EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE------ELKKKLKELEKRLEELE-ERHEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1222 ESEVEEALAELNALRSQKPVVELKEVIEEVIKHEKSP-EILREIDRLKQQLNELVNTNGRTQEQLIRLQG---------- 1290
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKeEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgr 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1291 ERDEWKR----ERSKVETKLVNKEVIRYENdplLEKEADRLRQEVRNMSQKRRAAedaiydLQNKYMLLERRKPEEKVVV 1366
Cdd:PRK03918 444 ELTEEHRkellEEYTAELKRIEKELKEIEE---KERKLRKELRELEKVLKKESEL------IKLKELAEQLKELEEKLKK 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1367 QEVILTQKDPKLRDEHNRLSRSLDEEVsnrRRLERDVQQLRALVEEQEKLLSFQEDRSKRLA-LEKEMR--------QTT 1437
Cdd:PRK03918 515 YNLEELEKKAEEYEKLKEKLIKLKGEI---KSLKKELEKLEELKKKLAELEKKLDELEEELAeLLKELEelgfesveELE 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1438 LRIKELEespaPVQEKIIMEEVVKLEKDPVLEQSASnLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEV 1517
Cdd:PRK03918 592 ERLKELE----PFYNEYLELKDAEKELEREEKELKK-LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1518 IRVEKDRALESERARIWEL-------------LNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKArnlAIQ 1584
Cdd:PRK03918 667 EYLELSRELAGLRAELEELekrreeikktlekLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER---ALS 743
|
650 660 670
....*....|....*....|....*....|
gi 694834822 1585 ERANLESEL-RELERQKQQKVLFLREESKL 1613
Cdd:PRK03918 744 KVGEIASEIfEELTEGKYSGVRVKAEENKV 773
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1065-1660 |
2.56e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.95 E-value: 2.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1065 REKVV--VKELIKLEKNPEMLKSV-RTLQLQID--EETFKRKS-AEEAIVKVKNKIEEVERLIETAEPKIIVKEvKQVEQ 1138
Cdd:PRK03918 147 REKVVrqILGLDDYENAYKNLGEViKEIKRRIErlEKFIKRTEnIEELIKEKEKELEEVLREINEISSELPELR-EELEK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1139 DPELLRESSKLKTLIEEERSKNLTLTGELGEL-----QSQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIAhLKRELQE 1213
Cdd:PRK03918 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLeekirELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1214 VTLKRTKIESEVEEALAELNALRSQ-KPVVELKEVIEEVIKHEKspEILREIDRLKQQLNELvntngrtqEQLIRLQGER 1292
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERiKELEEKEERLEELKKKLK--ELEKRLEELEERHELY--------EEAKAKKEEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1293 DEWKRERSKVETKLVNKEViryendPLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEvilt 1372
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKEL------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE---- 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1373 qkdpkLRDEHN-RLSRSLDEEVSN-RRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEMRQttlrIKELEESpapv 1450
Cdd:PRK03918 445 -----LTEEHRkELLEEYTAELKRiEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ----LKELEEK---- 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1451 QEKIIMEEVVKLEKdpvleqsasnlrlELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVirvekdRALESER 1530
Cdd:PRK03918 512 LKKYNLEELEKKAE-------------EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL------DELEEEL 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1531 ARIW-ELLNRERGAKQKAEEEVRRLRE---KIERAEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQkvlf 1606
Cdd:PRK03918 573 AELLkELEELGFESVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE---- 648
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 694834822 1607 LREESKLLNQRT-ENDRQKKKQLEHEFSLLEADILREKDQIYNKERLIRDLQSRV 1660
Cdd:PRK03918 649 LEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
911-1628 |
6.72e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 6.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 911 LKSQLE--EERRKVAK----IEEDLEEHRNKLLMLKtqkpIERVEEKevieyyrdpqvesnLSKMAQQIEEEGKKRQSLQ 984
Cdd:COG1196 198 LERQLEplERQAEKAEryreLKEELKELEAELLLLK----LRELEAE--------------LEELEAELEELEAELEELE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 985 EDIEVMSQKLAQMESEkkvipAQLLTKEITKI-EKDPSLDSQAASLRQEIKRLQEESLAAASKLEQckrelhvlerkqpn 1063
Cdd:COG1196 260 AELAELEAELEELRLE-----LEELELELEEAqAEEYELLAELARLEQDIARLEERRRELEERLEE-------------- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1064 irekvvvkelikleknpemlksvrtLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEpkiiVKEVKQVEQDPELL 1143
Cdd:COG1196 321 -------------------------LEEELAELEEELEELEEELEELEEELEEAEEELEEAE----AELAEAEEALLEAE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1144 RESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERvneiflvdpETEQQIAHLKRELQEVTLKRTKIES 1223
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE---------RLEEELEELEEALAELEEEEEEEEE 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1224 EVEEALAELNALRSQKpvVELKEVIEEviKHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVE 1303
Cdd:COG1196 443 ALEEAAEEEAELEEEE--EALLELLAE--LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1304 TKLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRRAAEDAIydlqnkyMLLERRKPEEKVVVQEVILTQKDPKLRDEHN 1383
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA-------AAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1384 RLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEespapvqekiimEEVVKLE 1463
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE------------GEGGSAG 659
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1464 KDPVLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRALESERARIWELLNRERGA 1543
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1544 KQKAEEEVRRLREKIERAEGMKR-TWAREETELQKARN-------LAIQERANLESELRELERQKQQkvlfLREESKLLN 1615
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLeELERELERLEREIEalgpvnlLAIEEYEELEERYDFLSEQRED----LEEARETLE 815
|
730
....*....|....
gi 694834822 1616 QRTEN-DRQKKKQL 1628
Cdd:COG1196 816 EAIEEiDRETRERF 829
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
661-1412 |
4.24e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 4.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 661 ALQDRANDLQK--MKRDLVAQEDCVLKLNRGLKDAEHSCSAVQNNFQEYCPDLPRQKREVQVLNDRYHAVADQLDQREKT 738
Cdd:TIGR02168 217 ELKAELRELELalLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 739 LRNISLTYQQFQNSNENLMfwmNNLPKHQVKTTDGPSQINYKLQAQKRLVEEIESKEPEKNAVvrlsrnvqstlndyelq 818
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLE---RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL----------------- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 819 agkySSSLDPTLTDFAAKRLRVTPLQESIQAQENDVTKLYMELAAENKQ------QLSRLEFAK-KIVEKKEVHEDIEAV 891
Cdd:TIGR02168 357 ----EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEierleaRLERLEDRReRLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 892 HKQAQQSENKAATSRESEGLKSQLEEERRKVAKIEEDLEEHRNKLLMLKTQ--------KPIERVEEKEVIEYYRDPQVE 963
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERElaqlqarlDSLERLQENLEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 964 SNLSKMA-------QQIEEEGKKRQSLQEDIEVMSQKLAqMESEKKVIPAQLLTKE-----ITKIEKDPSLDSQAASLRQ 1031
Cdd:TIGR02168 513 KNQSGLSgilgvlsELISVDEGYEAAIEAALGGRLQAVV-VENLNAAKKAIAFLKQnelgrVTFLPLDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1032 EIKRLQEESLAAASKLEQCKRELHVLerKQPNIREKVVVKEL-IKLEKNPEMLKSVRTLQLQID------EETFKRKSAE 1104
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRKA--LSYLLGGVLVVDDLdNALELAKKLRPGYRIVTLDGDlvrpggVITGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1105 EAIVKVKNKIEEVERLIETAEPKIIVKEVKQVeqdpELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRI 1184
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1185 EVKERVNEIFLVD-----PETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQkpVVELKEVIEEV-----IKH 1254
Cdd:TIGR02168 746 EERIAQLSKELTEleaeiEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA--LDELRAELTLLneeaaNLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1255 EKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIR---YENDPLLEKEADRLRQEV 1331
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1332 RNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVIltqkdPKLRDEHNRLSRSLDEEVSNR----RRLERDVQQLR 1407
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ-----ERLSEEYSLTLEEAEALENKIeddeEEARRRLKRLE 978
|
....*
gi 694834822 1408 ALVEE 1412
Cdd:TIGR02168 979 NKIKE 983
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1853-1891 |
5.00e-12 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 61.96 E-value: 5.00e-12
10 20 30
....*....|....*....|....*....|....*....
gi 694834822 1853 LLEAQAATGGIIDLISRDRFSVHKAIERGLIDRTYMQRL 1891
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
881-1445 |
1.28e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 881 KKEVHEDIEAVHKQAQQSENKAATSRESEglkSQLEEERRKVAKIEEDLEEHRNKLLMLKtqKPIERVEE-KEVIEYYR- 958
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKE---KELEEVLREINEISSELPELREELEKLE--KEVKELEElKEEIEELEk 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 959 -DPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMES-EKKVIPAQLLTKEITKIEKDPS-LDSQAASLRQEIKR 1035
Cdd:PRK03918 246 eLESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELReIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1036 LQEEslaaASKLEQCKRELHVLERKqpnirEKVVVKELIKLEKNPEMLKSVRTLQLQIDEetFKRKSAEEAIVKVKNKIE 1115
Cdd:PRK03918 326 IEER----IKELEEKEERLEELKKK-----LKELEKRLEELEERHELYEEAKAKKEELER--LKKRLTGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1116 EVERLIETAEPKI--IVKEVKQVEQDPELLRES-SKLKT----------LIEEERSKNL---------TLTGELGELQSQ 1173
Cdd:PRK03918 395 ELEKAKEEIEEEIskITARIGELKKEIKELKKAiEELKKakgkcpvcgrELTEEHRKELleeytaelkRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1174 YSIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIES-EVEEALAELNALRSQKPVVElKEVIEEVI 1252
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAeEYEKLKEKLIKLKGEIKSLK-KELEKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1253 KHEKSPEILREIDRLKQQLNELVNTNGR----TQEQLIRLQGERDEWKRERskVETKLVNKEVIRYEND-PLLEKEADRL 1327
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEElgfeSVEELEERLKELEPFYNEY--LELKDAEKELEREEKElKKLEEELDKA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1328 RQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVvqeviltqkdpKLRDEHNRLSRSLDEEVSNRRRLERDVQQLR 1407
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKKYSEEEYEELREEYL-----------ELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
570 580 590
....*....|....*....|....*....|....*...
gi 694834822 1408 ALVEEQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEE 1445
Cdd:PRK03918 701 EELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
873-1313 |
1.31e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 873 EFAKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLEEERRKVAKIEEDLEEHRNKL---------------- 936
Cdd:PRK03918 263 ELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIeerikeleekeerlee 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 937 ---LMLKTQKPIERVEE-----------KEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKK 1002
Cdd:PRK03918 343 lkkKLKELEKRLEELEErhelyeeakakKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1003 VIPAQLLT------------KEITKIEKDPSLdsqaASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIRekvvv 1070
Cdd:PRK03918 423 ELKKAIEElkkakgkcpvcgRELTEEHRKELL----EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES----- 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1071 kELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAE-----EAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDpELLRE 1145
Cdd:PRK03918 494 -ELIKLKELAEQLKELEEKLKKYNLEELEKKAEEyeklkEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD-ELEEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1146 SSKLKTLIEEERSKNL-TLTGELGELQSQYsiaekqKPRIEVKERVNEIflvdPETEQQIAHLKRELQEVTLKRTKIESE 1224
Cdd:PRK03918 572 LAELLKELEELGFESVeELEERLKELEPFY------NEYLELKDAEKEL----EREEKELKKLEEELDKAFEELAETEKR 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1225 VEEALAELNALRSQKPVVELKEVIEEVIkhEKSPEILREIDRLKqQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVET 1304
Cdd:PRK03918 642 LEELRKELEELEKKYSEEEYEELREEYL--ELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
....*....
gi 694834822 1305 KLVNKEVIR 1313
Cdd:PRK03918 719 ALERVEELR 727
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
927-1705 |
3.45e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 3.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 927 EDLEEHRNKLLMLKtqkpierveEKEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPA 1006
Cdd:PTZ00121 1030 EELTEYGNNDDVLK---------EKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKA 1100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1007 QLLTKEITKIEKDPSLDSQAASLRQEIKRLQEESLAA-ASKLEQCKRelhVLERKQPNIREKVVVKELIKLEKNPEMLKS 1085
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdARKAEEARK---AEDAKRVEIARKAEDARKAEEARKAEDAKK 1177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1086 V----RTLQLQIDEETFK----RKSAEEAIVKVKNKIEEVERLiETAEPKIIVKEVKQVEQDPELLRESSKLKTLiEEER 1157
Cdd:PTZ00121 1178 AeaarKAEEVRKAEELRKaedaRKAEAARKAEEERKAEEARKA-EDAKKAEAVKKAEEAKKDAEEAKKAEEERNN-EEIR 1255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1158 SKNLTLTGELGELQSQYSIAEKQKP----RIEVKERVNEifLVDPETEQQIAHLKRELQEVTlKRTKIESEVEEALAELN 1233
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKAdelkKAEEKKKADE--AKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKKAD 1332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1234 ALRsqKPVVELKEVIEEVIKHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGErdewkrERSKVETKLVNKEVIR 1313
Cdd:PTZ00121 1333 AAK--KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE------EKKKADEAKKKAEEDK 1404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1314 YENDPLLEKEADRLR-QEVRNMSQKRRAAEDAiydlqnkymlleRRKPEEKVVVQEViltqkdpKLRDEHNRLSRSLDEE 1392
Cdd:PTZ00121 1405 KKADELKKAAAAKKKaDEAKKKAEEKKKADEA------------KKKAEEAKKADEA-------KKKAEEAKKAEEAKKK 1465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1393 VSNRRRLErdvqQLRALVEEQEKllsfqEDRSKRLALEKEMRQTTLRIKELEESPA----PVQEKIIMEEVVKLEKdpvl 1468
Cdd:PTZ00121 1466 AEEAKKAD----EAKKKAEEAKK-----ADEAKKKAEEAKKKADEAKKAAEAKKKAdeakKAEEAKKADEAKKAEE---- 1532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1469 EQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKtiyKEVIRVEKDRALESERARIWELLNRERGAKQKAE 1548
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED---KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1549 EEVRRLREKIERAEGMKR----------TWAREETELQKARNLAIQE-----RANLESELRELERQKQQKVLFLREESKL 1613
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKaeeekkkveqLKKKEAEEKKKAEELKKAEeenkiKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1614 LNQRTENDRQKKKQLEhEFSLLEADILREKDQIYNKERL----IRDLQSRVNREEINHETQMRETNLSTKISILDPETGK 1689
Cdd:PTZ00121 1690 AAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEEnkikAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
810
....*....|....*.
gi 694834822 1690 DMSPYEAYKRGIIDRG 1705
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEEE 1784
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
605-1352 |
3.02e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 605 NALRRKYNDVNMLSSLYNEKAKAALNLETQIENTDKIISTFEAKLAQDSiipaspNALQDRANDLQKMKRDLVAQEDCVL 684
Cdd:TIGR04523 47 NELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK------DKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 685 KLNRGLKDAEHSCSAVQNNFQEYCPDLPRQKREVQVLNDRY-------HAVADQLDQREKTLRNISLTYQQFQNSNENLM 757
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYndlkkqkEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 758 FWMNNLPKHQVKTTDGPSQINYKLQAQKRLVEEIESKEPEKNAVVRLSRNVQSTLNDyelqagkYSSSLDPTLTDFAAKR 837
Cdd:TIGR04523 201 LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ-------LKDEQNKIKKQLSEKQ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 838 LRVTPLQESIQAQENDVTKLYMELAAENKQqlsrlefaKKIVEKKEVHEDIEAVHKQAQQSENKAatsRESEGLKSQLEE 917
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSEISDLNNQ--------KEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 918 ERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIEYYRDP--QVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLA 995
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEikNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 996 QMESEkkvipAQLLTKEITKIEKDPS-LDSQAASLRQEIKRLQeeslaaaSKLEQCKRELHVLERKQPNIREKV--VVKE 1072
Cdd:TIGR04523 423 LLEKE-----IERLKETIIKNNSEIKdLTNQDSVKELIIKNLD-------NTRESLETQLKVLSRSINKIKQNLeqKQKE 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1073 LIKLEKNPEMLKSVRT-LQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIIvkEVKQVEQDPELLRESSKLKT 1151
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKeLEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN--KDDFELKKENLEKEIDEKNK 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1152 LIEEERSKNLTLTGELGELQSQysIAEKQKpriEVKERVNEIflvdPETEQQIAHLKRELQEVTLKRTKIESEVEEALAE 1231
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQEL--IDQKEK---EKKDLIKEI----EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSK 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1232 LNALRSQkpVVELKEVIEEVIkhEKSPEILREIDRLKQQLNELVNTNGrtqeqlirlqgerdEWKRERSKVETKLVnKEV 1311
Cdd:TIGR04523 640 KNKLKQE--VKQIKETIKEIR--NKWPEIIKKIKESKTKIDDIIELMK--------------DWLKELSLHYKKYI-TRM 700
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 694834822 1312 IRYENDPLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKY 1352
Cdd:TIGR04523 701 IRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
219-393 |
1.86e-09 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 59.77 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 219 LYHHLQGCTKELGYLTDQQTRILKQDWSDQMMDVQSVRREYEDFKsNELLSQEEFVNHLQDDGDRMIELKHPAVKPIQAH 298
Cdd:cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALE-AELAAHEERVEALNELGEQLIEEGHPDAEEIQER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 299 QEALKNEWQNFLNLCICQESQLKSVESYKKFQDDAEAVSRSLKKMNSDLDTKYskfNKDSPGVVSDLLLQLENEEKAVRQ 378
Cdd:cd00176 81 LEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASED---LGKDLESVEELLKKHKELEEELEA 157
|
170
....*....|....*
gi 694834822 379 AEKSITDLKRRSKEI 393
Cdd:cd00176 158 HEPRLKSLNELAEEL 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1070-1619 |
6.97e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 6.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1070 VKELIkLEKnPEMLKSVRTLQLQIDEetfkRKSAEEAIVKVKNKIEEVERLIETAEpKIIVKEVKQVEQDPELL------ 1143
Cdd:COG4913 213 VREYM-LEE-PDTFEAADALVEHFDD----LERAHEALEDAREQIELLEPIRELAE-RYAAARERLAELEYLRAalrlwf 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1144 --RESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQkpRIEVKERVNEIFLVDPET-EQQIAHLKRELQEVTLKRTK 1220
Cdd:COG4913 286 aqRRLELLEAELEELRAELARLEAELERLEARLDALREE--LDELEAQIRGNGGDRLEQlEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1221 -------IESEVEEALAELNALRSQkpVVELKEVIEEvikhekspeilrEIDRLKQQLNELVNTNGRTQEQLIRLQGERD 1293
Cdd:COG4913 364 leallaaLGLPLPASAEEFAALRAE--AAALLEALEE------------ELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1294 EWKRERSKVETKLVN-KEVIRYEndplLEKEADRLR-----QEVRNMSQK-RRAAE-------------DAIYDLQNKYm 1353
Cdd:COG4913 430 SLERRKSNIPARLLAlRDALAEA----LGLDEAELPfvgelIEVRPEEERwRGAIErvlggfaltllvpPEHYAAALRW- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1354 lLERRKPEEKVVVQEVILTQKDPKLRD-EHNRLSRSLD-----------EEVSNRRRLER--DVQQL----RALVEE--- 1412
Cdd:COG4913 505 -VNRLHLRGRLVYERVRTGLPDPERPRlDPDSLAGKLDfkphpfrawleAELGRRFDYVCvdSPEELrrhpRAITRAgqv 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1413 -----------QEKLLSF----QEDRSKRLALEKEMRQTTLRIKELEESpapvqekiimEEVVKLEKDPVLEQSASNLRL 1477
Cdd:COG4913 584 kgngtrhekddRRRIRSRyvlgFDNRAKLAALEAELAELEEELAEAEER----------LEALEAELDALQERREALQRL 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1478 -ELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDR-ALESERARIWELLNRERGAKQKAEEEVRRLR 1555
Cdd:COG4913 654 aEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELeELEEELDELKGEIGRLEKELEQAEEELDELQ 733
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694834822 1556 EKIERAEGMKRTWAREETELQKA----RNLAIQERANLESELRELERQKQqkvlflREESKLLNQRTE 1619
Cdd:COG4913 734 DRLEAAEDLARLELRALLEERFAaalgDAVERELRENLEERIDALRARLN------RAEEELERAMRA 795
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1929-1967 |
1.20e-08 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 52.33 E-value: 1.20e-08
10 20 30
....*....|....*....|....*....|....*....
gi 694834822 1929 YLEVQHLTGGLIDPKKTGRIPVLEAAQTGMITGDLANRL 1967
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1889-1926 |
1.41e-08 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 52.10 E-value: 1.41e-08
10 20 30
....*....|....*....|....*....|....*...
gi 694834822 1889 QRLLNAQKAFTGIEDPVTKRRLSVGEAVQKGWITKDSA 1926
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
724-1306 |
3.99e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 3.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 724 RYHAVADQLDQREKTLRniSLTYQQFQnsnenlmfwmnnlpkhqvkttdgpsqinyklQAQKRLVEEIESKEPEKNAVVR 803
Cdd:COG1196 214 RYRELKEELKELEAELL--LLKLRELE-------------------------------AELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 804 LSRNVQSTLNDYELQAGKYSSSLDPTLTDFAAKRLRVTPLQESIQAQEndvtklymELAAENKQQLSRL--EFAKKIVEK 881
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE--------ERRRELEERLEELeeELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 882 KEVHEDIEAVHKQAQQSENKAATSRES-EGLKSQLEEERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIEyyrdp 960
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAElAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE----- 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 961 QVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIpAQLLTKEITKIEKDPSLDSQAASLRQEIKRLQEES 1040
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-AELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1041 LAAASKLEQCKRELHVLERKQPNIREK----------VVVKELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAEEAIVKV 1110
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAAlllaglrglaGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1111 K------------NKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKL--KTLIEEERSKNLTLTGELGELQSQYSI 1176
Cdd:COG1196 567 KaakagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVlgDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1177 AEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEVIKHEK 1256
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 694834822 1257 SPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKL 1306
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
915-1663 |
6.19e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.06 E-value: 6.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 915 LEEERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIEYYrdPQVESNLSKMAQQIEEEGKKRQSLQEDIEvMSQKL 994
Cdd:TIGR00618 175 LDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTY--HERKQVLEKELKHLREALQQTQQSHAYLT-QKREA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 995 AQMESEKKVIPAQLLTK--EITKIEKDPSLDSQAASLRQEIKRLQEESlAAASKLEQCKRELHVLERKQPNIREKVVVKE 1072
Cdd:TIGR00618 252 QEEQLKKQQLLKQLRARieELRAQEAVLEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1073 LIKLEKNPEMLKSVRTLQLQIDEETFKRKSAEEAivkvKNKIEEVERliETAEPKIIVKEVKQVEQDPELLRESSKLKTL 1152
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA----TSIREISCQ--QHTLTQHIHTLQQQKTTLTQKLQSLCKELDI 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1153 IEEERSKNLTLTGELGELQSQYSIAEKQkprIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAEL 1232
Cdd:TIGR00618 405 LQREQATIDTRTSAFRDLQGQLAHAKKQ---QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1233 NALRSQKPVVELKEVIEevikHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVI 1312
Cdd:TIGR00618 482 HLQETRKKAVVLARLLE----LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1313 RYEndplLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERrkpeekvvvqeviLTQKDPKLRDEHNRLSRSLDEE 1392
Cdd:TIGR00618 558 RAS----LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD-------------LTEKLSEAEDMLACEQHALLRK 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1393 VSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEmRQTTLRIKELEESpapvqekiimeevvklekdpvleqsa 1472
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERV-REHALSIRVLPKE-------------------------- 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1473 snlrleldrekmevLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRALESERARIWELLNRERGAKQKAEEEVR 1552
Cdd:TIGR00618 674 --------------LLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARED 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1553 RLREKIERAEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQKVLFLREESKLLNQRTENDRQKKKQLEHEF 1632
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
730 740 750
....*....|....*....|....*....|.
gi 694834822 1633 SLLEADILREKDQIYNKERLIRDLQSRVNRE 1663
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
776-1375 |
1.06e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 776 QINYKLQAQKRLVEEIESKEPEKNAVVRLSRNVQSTLNDYELQAGKYSSSLDPTLTDFAAKRLRVTPLQESIQAQeNDVT 855
Cdd:TIGR04523 139 NIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN-KSLE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 856 KLYMELAAENKQ-QLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEglKSQLEEERRKVAKIEEDLEEHRN 934
Cdd:TIGR04523 218 SQISELKKQNNQlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK--QKELEQNNKKIKELEKQLNQLKS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 935 KLLMLKTQKpiERVEEKEVIEYYRdpQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEiT 1014
Cdd:TIGR04523 296 EISDLNNQK--EQDWNKELKSELK--NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ-N 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1015 KIEKdpsLDSQAASLRQEIKRLQEESLAAASKLEQCKRElhvleRKQPNIREKVVVKELIKLEKNPEMLKSVRTLQ-LQI 1093
Cdd:TIGR04523 371 EIEK---LKKENQSYKQEIKNLESQINDLESKIQNQEKL-----NQQKDEQIKKLQQEKELLEKEIERLKETIIKNnSEI 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1094 DEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEERsknltltgelgelqsq 1173
Cdd:TIGR04523 443 KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK---------------- 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1174 ysiaekqkpriEVKERVNEIflvdpetEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEVIK 1253
Cdd:TIGR04523 507 -----------ELEEKVKDL-------TKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1254 hekspeilrEIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEviryENDPLLEKEADRLRQEVRN 1333
Cdd:TIGR04523 569 ---------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLE----KELEKAKKENEKLSSIIKN 635
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 694834822 1334 MSQKR-------RAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILTQKD 1375
Cdd:TIGR04523 636 IKSKKnklkqevKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKD 684
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1221-1656 |
1.50e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1221 IESEVEEALAELNALRSQKPVVELKEVieevikhEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERS 1300
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKEL-------KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1301 KVETKLVNKEVIRY--ENDPLLEKEADRLR------QEVRNMSQKRRAAEDAIYDLQNK-YMLLERRKPEEKVVVQEVIL 1371
Cdd:COG4717 120 KLEKLLQLLPLYQEleALEAELAELPERLEeleerlEELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1372 TQKDpkLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDR------SKRLALEKEMRQTTLRIKELEE 1445
Cdd:COG4717 200 ELEE--LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1446 SPAPVQEKIIMEEVVKLEKDPVLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDV-------LQKTKSQEKTIYKEVI 1518
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLspeelleLLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1519 RVEKDRALESERARIWELLNRergAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLESElrELER 1598
Cdd:COG4717 358 ELEEELQLEELEQEIAALLAE---AGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEE 432
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1599 QKQQkvlfLREESKLLNQRTENDRQKKKQLEHEFSLLEAD--ILREKDQIYNKERLIRDL 1656
Cdd:COG4717 433 ELEE----LEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
970-1189 |
1.61e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 970 AQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQL--LTKEITKIEKD-PSLDSQAASLRQEIKRLQEESLAAASK 1046
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaaLERRIAALARRiRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1047 LEQCKRELHVLERKQPNIREKVVVKELIKLEKNPEMLKSVRTLQLQIDEetfkRKSAEEAIVKVKNKIEEVERLIETAEP 1126
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA----RREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694834822 1127 KIIVKEVKQVEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKER 1189
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1137-1415 |
1.66e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1137 EQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIA---EKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQE 1213
Cdd:pfam17380 303 QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAmerERELERIRQEERKRELERIRQEEIAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1214 VTLKRTKIESEVEEalaELNALRSQKPVVELKE-------VIEEVIKHEKSPEILREIDRLKQQ----LNELVNTNGRTQ 1282
Cdd:pfam17380 383 LQMERQQKNERVRQ---ELEAARKVKILEEERQrkiqqqkVEMEQIRAEQEEARQREVRRLEEErareMERVRLEEQERQ 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1283 EQLIRLQGERDEWKRERSKVETKLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEE 1362
Cdd:pfam17380 460 QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAE 539
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 694834822 1363 kvvvqEVILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEK 1415
Cdd:pfam17380 540 -----EERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKA 587
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
864-1297 |
1.73e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 864 ENKQQLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLEEERRKVAKIEEDLEEHRNKLLMLKTQK 943
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 944 PIERVEEKEVIEYYRdpqvesnlskmAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEITKIEkdpSLD 1023
Cdd:COG4717 133 ELEALEAELAELPER-----------LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ---DLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1024 SQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREkvvvKELIKLEKNPEMLKSVRTLQLQIDEETFKRKSA 1103
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL----EERLKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1104 EEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDP--------ELLRESSKLKTLIEEERSKNLTLTGELGELQSQYS 1175
Cdd:COG4717 275 IAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPaleeleeeELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1176 IAEKQKPRIEVKERVNEI------FLVDPETE-QQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVI 1248
Cdd:COG4717 355 EAEELEEELQLEELEQEIaallaeAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEL 434
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 694834822 1249 EEVIKHEKSPE-----ILREIDRLKQQLNELVnTNGRTQEQLIRLQGERDEWKR 1297
Cdd:COG4717 435 EELEEELEELEeeleeLREELAELEAELEQLE-EDGELAELLQELEELKAELRE 487
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
893-1645 |
1.87e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 893 KQAQQSENKAATSRESEG---LKSQLEEERRKVAKIEEDLEEHRNKLlmlktQKPIERVEEKEVIEYYRDPQVESNLSKM 969
Cdd:pfam01576 34 KHQQLCEEKNALQEQLQAeteLCAEAEEMRARLAARKQELEEILHEL-----ESRLEEEEERSQQLQNEKKKMQQHIQDL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 970 AQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQ--LLTKEITKIEKDPS-LDSQAASLRQEIKRLQEeslaAASK 1046
Cdd:pfam01576 109 EEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQnsKLSKERKLLEERISeFTSNLAEEEEKAKSLSK----LKNK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1047 LEQCKRELHVLERKQPNIREKVVvKELIKLE-KNPEMLKSVRTLQLQIDEETFKRKSAEEAIVKVKNKIEEverliETAE 1125
Cdd:pfam01576 185 HEAMISDLEERLKKEEKGRQELE-KAKRKLEgESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEE-----ETAQ 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1126 PKIIVKEVKqveqdpELLRESSKLKTLIEEERSknltltgelgelqsQYSIAEKQKPRIEVKERVNEIFL---VDPETEQ 1202
Cdd:pfam01576 259 KNNALKKIR------ELEAQISELQEDLESERA--------------ARNKAEKQRRDLGEELEALKTELedtLDTTAAQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1203 QIAHLKRElQEVTLKRTKIESEVEEALAELNALRsQKPVVELKEVIEEVikhEKSPEILREIDRLKQQLNElvnTNGRTQ 1282
Cdd:pfam01576 319 QELRSKRE-QEVTELKKALEEETRSHEAQLQEMR-QKHTQALEELTEQL---EQAKRNKANLEKAKQALES---ENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1283 EQLIRLQGERDEWKRERSKVETKLVNKEVIRYENDPLLEKEADR---LRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRK 1359
Cdd:pfam01576 391 AELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKlskLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1360 PEEKVVVQE-----VILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKllSFQEDRSKRLALEKEMR 1434
Cdd:pfam01576 471 QDTQELLQEetrqkLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK--KLEEDAGTLEALEEGKK 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1435 QTTlriKELEESPAPVQEKiiMEEVVKLEKDPV-LEQSASNLRLELDREKMEVLNLQRECKNL-QMQVD-VLQKTKSQEK 1511
Cdd:pfam01576 549 RLQ---RELEALTQQLEEK--AAAYDKLEKTKNrLQQELDDLLVDLDHQRQLVSNLEKKQKKFdQMLAEeKAISARYAEE 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1512 TIYKEVIRVEKD-RALESERAriwelLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLE 1590
Cdd:pfam01576 624 RDRAEAEAREKEtRALSLARA-----LEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMK 698
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1591 SELRELERQKQQ---------------KVLFLREesklLNQRTENDRQKKKQLEHEFSLLEADILREKDQ 1645
Cdd:pfam01576 699 TQLEELEDELQAtedaklrlevnmqalKAQFERD----LQARDEQGEEKRRQLVKQVRELEAELEDERKQ 764
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
880-1631 |
3.44e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 880 EKKEVHEDIEAVHKQAQQSENKAAT----SRESEGLKSQLEEERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIE 955
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSlsklKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 956 YYRD--PQVESNLSKMAQQIEEEGKKRQS--------------LQEDIEVMSQKLAQMESEKKVIPAQLltkEITKIEKD 1019
Cdd:pfam01576 233 ELRAqlAKKEEELQAALARLEEETAQKNNalkkireleaqiseLQEDLESERAARNKAEKQRRDLGEEL---EALKTELE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1020 PSLDSQAAslRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVVVKEL-----------IKLEKNPEMLKS--- 1085
Cdd:pfam01576 310 DTLDTTAA--QQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELteqleqakrnkANLEKAKQALESena 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1086 -----VRTLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIivkevkqveqdPELLRESSKLKTLIEEERSKN 1160
Cdd:pfam01576 388 elqaeLRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKL-----------SKLQSELESVSSLLNEAEGKN 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1161 LTLTGELGELQSQYS-----IAEKQKPRIEVKERVNEIflvdpetEQQIAHLKRELQEVTLKRTKIESEVEEALAELNAL 1235
Cdd:pfam01576 457 IKLSKDVSSLESQLQdtqelLQEETRQKLNLSTRLRQL-------EDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDM 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1236 RsqKPVVELKEVIEEVikHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEwkrerskvetklvnkevirye 1315
Cdd:pfam01576 530 K--KKLEEDAGTLEAL--EEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDD--------------------- 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1316 ndplLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNkymlLERRKPEEKvvvqevilTQKDPKLRDEHNR---LSRSLDEE 1392
Cdd:pfam01576 585 ----LLVDLDHQRQLVSNLEKKQKKFDQMLAEEKA----ISARYAEER--------DRAEAEAREKETRalsLARALEEA 648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1393 VSNRRRLERDVQQLRAlveEQEKLLSFQED---------RSKRlALEKEMRQTTLRIKELE-ESPAPVQEKIIMEEVVKL 1462
Cdd:pfam01576 649 LEAKEELERTNKQLRA---EMEDLVSSKDDvgknvheleRSKR-ALEQQVEEMKTQLEELEdELQATEDAKLRLEVNMQA 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1463 -----------------EKDPVLEQSASNLRLELDREKMEVLN-------LQRECKNLQMQVDVLQKTKSQEKTIYKEVI 1518
Cdd:pfam01576 725 lkaqferdlqardeqgeEKRRQLVKQVRELEAELEDERKQRAQavaakkkLELDLKELEAQIDAANKGREEAVKQLKKLQ 804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1519 RVEKD--RALESERARIWELLNRERGAKQKA---EEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLESEL 1593
Cdd:pfam01576 805 AQMKDlqRELEEARASRDEILAQSKESEKKLknlEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEK 884
|
810 820 830
....*....|....*....|....*....|....*...
gi 694834822 1594 RELERQKQQKVLFLREESklLNQRTENDRQKKKQLEHE 1631
Cdd:pfam01576 885 RRLEARIAQLEEELEEEQ--SNTELLNDRLRKSTLQVE 920
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1385-1660 |
4.93e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 54.75 E-value: 4.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1385 LSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLE- 1463
Cdd:pfam05557 39 LKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRr 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1464 --KDPVLEQSASNLRLELDREKMEVL-----NLQRECKNLQMQVDVL----QKTKSQEKTIYKEVIRVEKDRALESERAR 1532
Cdd:pfam05557 119 qiQRAELELQSTNSELEELQERLDLLkakasEAEQLRQNLEKQQSSLaeaeQRIKELEFEIQSQEQDSEIVKNSKSELAR 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1533 IWEL-------------LNRERGAKQKAEEEVRRLREKIERAEGMKRTWA-------REETELQKARNLAIQERANLES- 1591
Cdd:pfam05557 199 IPELekelerlrehnkhLNENIENKLLLKEEVEDLKRKLEREEKYREEAAtlelekeKLEQELQSWVKLAQDTGLNLRSp 278
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1592 -ELRELERQKQQKVLFLREESKLLNQRTENDRQKKKQLEHEFSLLEADILREKDQIYNKERLIRDLQSRV 1660
Cdd:pfam05557 279 eDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRV 348
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
837-1448 |
5.38e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 837 RLRVTPLQESIQAQENDVTKLYMELAAENKQQLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLE 916
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKA 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 917 EERRKVAKIEEDLEE------HRNKLLMLKTQKPIERVEEKEVIEYYRD------------PQVESNLSKMAQQIEEEGK 978
Cdd:TIGR00606 512 DLDRKLRKLDQEMEQlnhhttTRTQMEMLTKDKMDKDEQIRKIKSRHSDeltsllgyfpnkKQLEDWLHSKSKEINQTRD 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 979 KRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKE--ITKIEKDPSLDSQAASLRQEIK--RLQEESLAAASKLEQCKREL 1054
Cdd:TIGR00606 592 RLAKLNKELASLEQNKNHINNELESKEEQLSSYEdkLFDVCGSQDEESDLERLKEEIEksSKQRAMLAGATAVYSQFITQ 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1055 HVLERK------QPNIREKVVVKELIKLEKNpeMLKSVRTLQLQIDEETFKR-KSAEEAIVKVKNKIEEVERlietaepk 1127
Cdd:TIGR00606 672 LTDENQsccpvcQRVFQTEAELQEFISDLQS--KLRLAPDKLKSTESELKKKeKRRDEMLGLAPGRQSIIDL-------- 741
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1128 iIVKEVKQV-EQDPELLRESSKLKTLIEEERSknltltgELGELQSQYSIAEKQKPRIEVKERVNEIFlvdPETEQQIAH 1206
Cdd:TIGR00606 742 -KEKEIPELrNKLQKVNRDIQRLKNDIEEQET-------LLGTIMPEEESAKVCLTDVTIMERFQMEL---KDVERKIAQ 810
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1207 LKRELQEVTLKRT--KIESEVEEALAELNALRSQkpVVELKEVIE---EVIKHEKSPeiLREIDRLKQQLNELVNTNGRT 1281
Cdd:TIGR00606 811 QAAKLQGSDLDRTvqQVNQEKQEKQHELDTVVSK--IELNRKLIQdqqEQIQHLKSK--TNELKSEKLQIGTNLQRRQQF 886
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1282 QEQLIRLQGERDEWKRERSKVETKLVNKEViryendpLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPE 1361
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLET-------FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKD 959
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1362 EKVVVQEVILTQKDPKlRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEmrqttlrIK 1441
Cdd:TIGR00606 960 IENKIQDGKDDYLKQK-ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENE-------LK 1031
|
....*..
gi 694834822 1442 ELEESPA 1448
Cdd:TIGR00606 1032 EVEEELK 1038
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1126-1599 |
8.01e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 8.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1126 PKIIVKEVKQVEQDpelLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIA 1205
Cdd:COG4717 66 PELNLKELKELEEE---LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1206 HLKRELQEVTLKRTkiesEVEEALAELNALRSQkpVVELKEVIEEvIKHEKSPEILREIDRLKQQLNELvntngrtQEQL 1285
Cdd:COG4717 143 ELPERLEELEERLE----ELRELEEELEELEAE--LAELQEELEE-LLEQLSLATEEELQDLAEELEEL-------QQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1286 IRLQGERDEWKRERSKVEtklvnKEVIRYENDPLLEKEADRLRQEVRnmSQKRRAAEDAIYDLQNKYMLLERRKPEEKVV 1365
Cdd:COG4717 209 AELEEELEEAQEELEELE-----EELEQLENELEAAALEERLKEARL--LLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1366 VQEVILTQKDPKLRdEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSkrLALEKEMRQTTLRIKELEE 1445
Cdd:COG4717 282 VLGLLALLFLLLAR-EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL--LELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1446 spapvQEKIIMEEVVKLEKDPVLEQSASNLRLELDrekmEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRA 1525
Cdd:COG4717 359 -----LEEELQLEELEQEIAALLAEAGVEDEEELR----AALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE 429
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694834822 1526 LESERARIWELLNRERGAKQKAEEEVRRLREKIERAEgmkrtwarEETELQKARnlaiQERANLESELRELERQ 1599
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLE--------EDGELAELL----QELEELKAELRELAEE 491
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
864-1524 |
8.72e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.34 E-value: 8.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 864 ENKQQLSRL-----EFAKKIvEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLEEERRKVAKIEEDLEEHRN---- 934
Cdd:pfam05483 71 ENSEGLSRLysklyKEAEKI-KKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDlike 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 935 -----KLLMLKTQKPIERVEEKEVIEYYRDP------QVESNLSKMAQQIEE----EGKKRQSLQEDIEVMSQKLAQMES 999
Cdd:pfam05483 150 nnatrHLCNLLKETCARSAEKTKKYEYEREEtrqvymDLNNNIEKMILAFEElrvqAENARLEMHFKLKEDHEKIQHLEE 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1000 EKKvipaqlltKEITKIEKDPSL----DSQAASLRQEIKRLQEESLAAASKLEQcKRELHVLERKQPNIREKVVVKELIK 1075
Cdd:pfam05483 230 EYK--------KEINDKEKQVSLlliqITEKENKMKDLTFLLEESRDKANQLEE-KTKLQDENLKELIEKKDHLTKELED 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1076 LEKNpeMLKSVRTLQ-----LQID---------------EETFKRKSAEEAIV-KVKNKIEEVERLIETAEPKIIVKE-- 1132
Cdd:pfam05483 301 IKMS--LQRSMSTQKaleedLQIAtkticqlteekeaqmEELNKAKAAHSFVVtEFEATTCSLEELLRTEQQRLEKNEdq 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1133 ----VKQVEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEIFLVDPETE------- 1201
Cdd:pfam05483 379 lkiiTMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEihdleiq 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1202 ------------QQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKP--VVELKEVIEEVIKHEKSPE-ILREIDR 1266
Cdd:pfam05483 459 ltaiktseehylKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASdmTLELKKHQEDIINCKKQEErMLKQIEN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1267 LKQQLNELVNTNGRTQEQLIRlQGERDEWKRERSKVETKLVNKEVIRYEND-PLLEKEADRLRQEVRNMSQKrraaedaI 1345
Cdd:pfam05483 539 LEEKEMNLRDELESVREEFIQ-KGDEVKCKLDKSEENARSIEYEVLKKEKQmKILENKCNNLKKQIENKNKN-------I 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1346 YDLQNKYMLLERRKPEE---------KVVVQEVILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKL 1416
Cdd:pfam05483 611 EELHQENKALKKKGSAEnkqlnayeiKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKL 690
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1417 lsfqedrskRLALEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLEKDPVLEQSASNLRLELDrekMEVLNLQRECKNL 1496
Cdd:pfam05483 691 ---------QKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALE---IELSNIKAELLSL 758
|
730 740
....*....|....*....|....*...
gi 694834822 1497 QMQVDVLQKTKSQEKTIYKEVIRVEKDR 1524
Cdd:pfam05483 759 KKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1242-1602 |
1.42e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1242 VELKEVIEEVIK----HEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEwkrersKVETKLVNKEVIRYEND 1317
Cdd:TIGR02169 153 VERRKIIDEIAGvaefDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK------AERYQALLKEKREYEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1318 PLLeKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKpEEKVVVQEVILTQKDPKLRDEHNRLSRSLDEEVSNRR 1397
Cdd:TIGR02169 227 ELL-KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL-EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1398 RLERDVQQLRALVEE-QEKLLSFQEDRSKRLA----LEKEMRQTTLRIKELEESPAPVQEKIiMEEVVKLEKdpvLEQSA 1472
Cdd:TIGR02169 305 SLERSIAEKERELEDaEERLAKLEAEIDKLLAeieeLEREIEEERKRRDKLTEEYAELKEEL-EDLRAELEE---VDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1473 SNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQektiykevirvekdraLESERARIWELLNRERGAKQKAEEEVR 1552
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQR----------------LSEELADLNAAIAGIEAKINELEEEKE 444
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 694834822 1553 RLREKIERAEG-MKRTWAREETELQKARNLAIQ------ERANLESELRELERQKQQ 1602
Cdd:TIGR02169 445 DKALEIKKQEWkLEQLAADLSKYEQELYDLKEEydrvekELSKLQRELAEAEAQARA 501
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1851-1885 |
1.68e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 46.32 E-value: 1.68e-06
10 20 30
....*....|....*....|....*....|....*
gi 694834822 1851 QKLLEAQAATGGIIDLISRDRFSVHKAIERGLIDR 1885
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDP 35
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
873-1650 |
1.86e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 873 EFAKKIVEKKEVHEDIEAVHKQAqqSENKAATSRESEGLKSQLEEERRKVAKIEEDLeehRNKLlmlktQKPIERVEE-- 950
Cdd:pfam15921 89 DLQRRLNESNELHEKQKFYLRQS--VIDLQTKLQEMQMERDAMADIRRRESQSQEDL---RNQL-----QNTVHELEAak 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 951 --KEVIEYYRDPQVEsNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEITKIEKDpsLDSQAAS 1028
Cdd:pfam15921 159 clKEDMLEDSNTQIE-QLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRE--LDTEISY 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1029 LRQEIKRLqEESLAAASKLEQCKRELhVLERKQPNIrEKVVVKELIKLEKNPEMLKSVRTL------QLQIDEETFKRKS 1102
Cdd:pfam15921 236 LKGRIFPV-EDQLEALKSESQNKIEL-LLQQHQDRI-EQLISEHEVEITGLTEKASSARSQansiqsQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1103 A---------EEAIVKVKNKIEEVERlieTAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEerSKNL-----TLTGELG 1168
Cdd:pfam15921 313 SmymrqlsdlESTVSQLRSELREAKR---MYEDKIEELEKQLVLANSELTEARTERDQFSQE--SGNLddqlqKLLADLH 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1169 ELQSQYSIAEKQKPRIEVKERVNEIflvdpeteqQIAHLKRELQEVTLkrtkiesEVEEALAELNALRSQkpvvelkevi 1248
Cdd:pfam15921 388 KREKELSLEKEQNKRLWDRDTGNSI---------TIDHLRRELDDRNM-------EVQRLEALLKAMKSE---------- 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1249 eevikhekspeilreidrlkqqlnelvnTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRyendplleKEADRLR 1328
Cdd:pfam15921 442 ----------------------------CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLR--------KVVEELT 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1329 QEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILT-QKDPKLRDEHNRLSRSLDE-EVSNRRRLERD--VQ 1404
Cdd:pfam15921 486 AKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKlQELQHLKNEGDHLRNVQTEcEALKLQMAEKDkvIE 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1405 QLRALVEEQEKLLSfQEDRS------KRLALEKEMRQTTLRIKEL----EESPAPVQEKIIMEEVVKLEKDPVLEQSASN 1474
Cdd:pfam15921 566 ILRQQIENMTQLVG-QHGRTagamqvEKAQLEKEINDRRLELQEFkilkDKKDAKIRELEARVSDLELEKVKLVNAGSER 644
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1475 LRL--ELDREKMEVLNlqrECKNLQMQVDVLqktkSQEKTIYKEVIRvEKDRALESERariwellNRERGAKQKAEEEVR 1552
Cdd:pfam15921 645 LRAvkDIKQERDQLLN---EVKTSRNELNSL----SEDYEVLKRNFR-NKSEEMETTT-------NKLKMQLKSAQSELE 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1553 RLREKIERAEGMKRTWAREETELQKARNLAIQERANLESELRELER---QKQQKVLFLREESKLLNQRTENDRQKKKQLE 1629
Cdd:pfam15921 710 QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEamtNANKEKHFLKEEKNKLSQELSTVATEKNKMA 789
|
810 820
....*....|....*....|.
gi 694834822 1630 HEFSLLEADILREKDQIYNKE 1650
Cdd:pfam15921 790 GELEVLRSQERRLKEKVANME 810
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1377-1651 |
1.95e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1377 KLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKlLSFQED--------RSKRLALEKEMRQTTLRIKELEESPA 1448
Cdd:COG3096 789 ELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLA-VAFAPDpeaelaalRQRRSELERELAQHRAQEQQLRQQLD 867
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1449 PVQEKI-----IMEEVVKLEkDPVLEQSASNLRLELDREKMEVLNLQRECKNLQM---QVDVLQKTKSQEKTIYKEVIRV 1520
Cdd:COG3096 868 QLKEQLqllnkLLPQANLLA-DETLADRLEELREELDAAQEAQAFIQQHGKALAQlepLVAVLQSDPEQFEQLQADYLQA 946
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1521 EKdrALESERARIWELL----NRERGAKQKAEEE-------VRRLREKIERAEgMKRTWAREETELQKAR-NLAIQERAN 1588
Cdd:COG3096 947 KE--QQRRLKQQIFALSevvqRRPHFSYEDAVGLlgensdlNEKLRARLEQAE-EARREAREQLRQAQAQySQYNQVLAS 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1589 LES-------ELRELERQKQQKVLFL--------REESKLLNQRTENDRQKKKQLEHEFSLLEADI------LREKDQIY 1647
Cdd:COG3096 1024 LKSsrdakqqTLQELEQELEELGVQAdaeaeeraRIRRDELHEELSQNRSRRSQLEKQLTRCEAEMdslqkrLRKAERDY 1103
|
....
gi 694834822 1648 NKER 1651
Cdd:COG3096 1104 KQER 1107
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
864-1075 |
2.16e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 52.71 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 864 ENKQQLSRLEFAKKIVEKK-EVHED----IEAVHKQAQQSENK-----AATSRESEGLKSQLEEERRKVAKIEEDLEEHR 933
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQiKTYNKnieeQRKKNGENIARKQNkydelVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 934 NKLLMLKTQKPIERVEEKEVIEYYRDPQVesnLSKMAQQIEEEGKKRQSLQEDIEVMSQKL-----AQMESEKKVIPAQL 1008
Cdd:PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGV---CPTCTQQISEGPDRITKIKDKLKELQHSLekldtAIDELEEIMDEFNE 334
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694834822 1009 LTKEITKIEKDPS--------LDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKV----VVKELIK 1075
Cdd:PHA02562 335 QSKKLLELKNKIStnkqslitLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKyhrgIVTDLLK 413
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
843-1446 |
2.33e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 843 LQESIQAQENDVTKLYMELAAENK------QQLSRLEFAKKIVEKKEVHEDiEAVHKQAQQSENKAATS---RESEGLKS 913
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKshsitlKEIERLSIEYNNAMDDYNNLK-SALNELSSLEDMKNRYEseiKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 914 QLEEERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIEYYRdpQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQK 993
Cdd:PRK01156 267 MELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKK--QILSNIDAEINKYHAIIKKLSVLQKDYNDYIKK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 994 LAQMESEKKvipaqlltkeitkiekdpsldsqaasLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVVvKEL 1073
Cdd:PRK01156 345 KSRYDDLNN--------------------------QILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFIS-EIL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1074 IKLEKNPEMLKSVRT-LQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIEtaepkiivkevkqveqdpellressklktl 1152
Cdd:PRK01156 398 KIQEIDPDAIKKELNeINVKLQDISSKVSSLNQRIRALRENLDELSRNME------------------------------ 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1153 IEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKrtkiesEVEEALAEL 1232
Cdd:PRK01156 448 MLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE------EINKSINEY 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1233 NALRSQKPVVELKEVIEEVIK--HEKSPEILREIDRLKQQLNELVNT---NGRTQEQLI---RLQGERDEWKRERSKVET 1304
Cdd:PRK01156 522 NKIESARADLEDIKIKINELKdkHDKYEEIKNRYKSLKLEDLDSKRTswlNALAVISLIdieTNRSRSNEIKKQLNDLES 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1305 KLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRRAAED---AIYDLQNKYMLLERRKPEEKVVVQEV-ILTQKDPKLRD 1380
Cdd:PRK01156 602 RLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEnkiLIEKLRGKIDNYKKQIAEIDSIIPDLkEITSRINDIED 681
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694834822 1381 EHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSfqeDRSKRLALEKEMRQTTLRIKELEES 1446
Cdd:PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN---DINETLESMKKIKKAIGDLKRLREA 744
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1378-1646 |
3.26e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1378 LRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEkiime 1457
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAA----- 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1458 evvklekdpvLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRALESERARIWELL 1537
Cdd:COG4913 690 ----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1538 --NRERGAKQKAEEEVRRLREKIERAEGM--------KRTWAREETELQkarnLAIQERANLESELRELERQKqqkvlFL 1607
Cdd:COG4913 760 gdAVERELRENLEERIDALRARLNRAEEEleramrafNREWPAETADLD----ADLESLPEYLALLDRLEEDG-----LP 830
|
250 260 270
....*....|....*....|....*....|....*....
gi 694834822 1608 REESKLLNQRTENDRQKKKQLEHEfslLEADILREKDQI 1646
Cdd:COG4913 831 EYEERFKELLNENSIEFVADLLSK---LRRAIREIKERI 866
|
|
| SPEC |
smart00150 |
Spectrin repeats; |
220-321 |
4.49e-06 |
|
Spectrin repeats;
Pssm-ID: 197544 [Multi-domain] Cd Length: 101 Bit Score: 46.94 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 220 YHHLQGCTKELGYLTDQQTRILKQDWSDQMMDVQSVRREYEDFKsNELLSQEEFVNHLQDDGDRMIELKHPAVKPIQAHQ 299
Cdd:smart00150 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFE-AELEAHEERVEALNELGEQLIEEGHPDAEEIEERL 79
|
90 100
....*....|....*....|..
gi 694834822 300 EALKNEWQNFLNLCICQESQLK 321
Cdd:smart00150 80 EELNERWEELKELAEERRQKLE 101
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
604-1683 |
5.19e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.98 E-value: 5.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 604 LNALRRKYNDVNMLSSLYNEKAKAalNLETQIENTdKIISTFEAKLAQdsIIpaspnalqdraNDLQKMKRDLVAQEDCV 683
Cdd:TIGR01612 788 ISEIKNHYNDQINIDNIKDEDAKQ--NYDKSKEYI-KTISIKEDEIFK--II-----------NEMKFMKDDFLNKVDKF 851
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 684 LKLNRGLK---DAEHSCSAVQNNfqeycpdlpRQKREVQvlndryhavADQLDQREKTLrnisltyqqfqNSNENLMFWM 760
Cdd:TIGR01612 852 INFENNCKekiDSEHEQFAELTN---------KIKAEIS---------DDKLNDYEKKF-----------NDSKSLINEI 902
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 761 NNLPKHQVKTTDGPSQINYKLQAQKRLVEEIESKEPEKNAV-VRLSRNVQsTLNDYELQAGKYSSSLDPTLTDfaakrlR 839
Cdd:TIGR01612 903 NKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILkEILNKNID-TIKESNLIEKSYKDKFDNTLID------K 975
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 840 VTPLQE--------SIQAQENDVTKLYMELAA---ENKQQLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENKAATSres 908
Cdd:TIGR01612 976 INELDKafkdaslnDYEAKNNELIKYFNDLKAnlgKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTS--- 1052
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 909 egLKSQLEEERRKVAKIEEDLeehrNKLLMLKTQKPIERVEE-KEVIEYYR--DPQVESNLsKMAQQIEEegkkrqsLQE 985
Cdd:TIGR01612 1053 --IYNIIDEIEKEIGKNIELL----NKEILEEAEINITNFNEiKEKLKHYNfdDFGKEENI-KYADEINK-------IKD 1118
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 986 DIEVMSQKLAQMesekkvipaqllTKEITKIEKDPslDSQAASLRQEIKRLQEESLAAASKleqckRELHVLERKQPNIR 1065
Cdd:TIGR01612 1119 DIKNLDQKIDHH------------IKALEEIKKKS--ENYIDEIKAQINDLEDVADKAISN-----DDPEEIEKKIENIV 1179
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1066 EKV------------VVKELIKLEKNPEMLKSVRTLQL------------QIDEEtfKRKSaeeaivkvKNKIEEVERLI 1121
Cdd:TIGR01612 1180 TKIdkkkniydeikkLLNEIAEIEKDKTSLEEVKGINLsygknlgklfleKIDEE--KKKS--------EHMIKAMEAYI 1249
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1122 ETaepkiiVKEVKqvEQDPELLRESSKLKTLIEEERSKNLTLTgelgELQSQYSIAEKQKPRI-EVKERVNEIfLVDPET 1200
Cdd:TIGR01612 1250 ED------LDEIK--EKSPEIENEMGIEMDIKAEMETFNISHD----DDKDHHIISKKHDENIsDIREKSLKI-IEDFSE 1316
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1201 EQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEVIKHEKSPEilreidrlkqQLNELVNTNGR 1280
Cdd:TIGR01612 1317 ESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIKKIIDEVKEYTKEIE----------ENNKNIKDELD 1386
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1281 TQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYENDpLLEKEADRLRQEVRNMSQKRRAAEDaiydlqNKYMLLERRKP 1360
Cdd:TIGR01612 1387 KSEKLIKKIKDDINLEECKSKIESTLDDKDIDECIKK-IKELKNHILSEESNIDTYFKNADEN------NENVLLLFKNI 1459
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1361 E-EKVVVQEVILTQKD----------PKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLAL 1429
Cdd:TIGR01612 1460 EmADNKSQHILKIKKDnatndhdfniNELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNKF 1539
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1430 EKEMRQTTLRIKELEEspapVQEKIIME--------EVVKLEKDPVLEQSASNlrlelDREKMEVLNLQRECKNLQMQVD 1501
Cdd:TIGR01612 1540 AKTKKDSEIIIKEIKD----AHKKFILEaekseqkiKEIKKEKFRIEDDAAKN-----DKSNKAAIDIQLSLENFENKFL 1610
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1502 VLQKTKSQEKTIYKEVIRVEKDRALESERARIWELlnRERGAKQKAEEE-VRRLREKIERAEGMKRTWAREETELQKARN 1580
Cdd:TIGR01612 1611 KISDIKKKINDCLKETESIEKKISSFSIDSQDTEL--KENGDNLNSLQEfLESLKDQKKNIEDKKKELDELDSEIEKIEI 1688
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1581 LAIQERANLE----SELRELERQKQQKVLFLREESK-----LLNQRTENDRQKKKQLEH--EFSLLEADILREKDQIYNk 1649
Cdd:TIGR01612 1689 DVDQHKKNYEigiiEKIKEIAIANKEEIESIKELIEptienLISSFNTNDLEGIDPNEKleEYNTEIGDIYEEFIELYN- 1767
|
1130 1140 1150
....*....|....*....|....*....|....
gi 694834822 1650 erLIRDLQSRVNREEINHEtQMRETNLSTKISIL 1683
Cdd:TIGR01612 1768 --IIAGCLETVSKEPITYD-EIKNTRINAQNEFL 1798
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1083-1619 |
8.99e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1083 LKSVRTLQLQIDEETFKRKSAE--EAIVKVKNKIEEVERLIETAEpkiivkevKQVEQDPELLRESSKLKTLIEEERSKN 1160
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDlhERLNGLESELAELDEEIERYE--------EQREQARETRDEADEVLEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1161 LTLTGELGELQSqySIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSqkp 1240
Cdd:PRK02224 254 ETLEAEIEDLRE--TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD--- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1241 vvELKEVIEEVIKHEKSPEILRE-IDRLKQQLNELVNTNGR-------TQEQLIRLQGERDEWKRERSKVETKLVNKEVI 1312
Cdd:PRK02224 329 --RLEECRVAAQAHNEEAESLREdADDLEERAEELREEAAEleseleeAREAVEDRREEIEELEEEIEELRERFGDAPVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1313 RYENDPLLE---KEADRLRQEVRNMSQKRRAAEDAIYDLQNkymLLERRK-PEEKVVVQEVILTQKDPKLRDEHNRLSRS 1388
Cdd:PRK02224 407 LGNAEDFLEelrEERDELREREAELEATLRTARERVEEAEA---LLEAGKcPECGQPVEGSPHVETIEEDRERVEELEAE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1389 LDEEVSNRRRLERDVQQLRALVE---EQEKLLSFQEDRSKRLAL------EKEMRQTTLRiKELEESPAPVQEKIIMEEV 1459
Cdd:PRK02224 484 LEDLEEEVEEVEERLERAEDLVEaedRIERLEERREDLEELIAErretieEKRERAEELR-ERAAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1460 VKLEKDPVLEQSAS-NLRLELDREKMEVLN----LQRECKNLQMQVDVLQKTKSQektiYKEVIRVEKDRaLESERARIW 1534
Cdd:PRK02224 563 AEEEAEEAREEVAElNSKLAELKERIESLErirtLLAAIADAEDEIERLREKREA----LAELNDERRER-LAEKRERKR 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1535 ELLNRERGAK-QKAEEEVRRLREKIERAEGMKRTWAREETELQKarnlaiqERANLESELRELERqkqqkvlfLREESKL 1613
Cdd:PRK02224 638 ELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELREERDDLQA-------EIGAVENELEELEE--------LRERREA 702
|
....*.
gi 694834822 1614 LNQRTE 1619
Cdd:PRK02224 703 LENRVE 708
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1682-1710 |
1.07e-05 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 43.86 E-value: 1.07e-05
10 20
....*....|....*....|....*....
gi 694834822 1682 ILDPETGKDMSPYEAYKRGIIDRGQYIQL 1710
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1047-1507 |
1.31e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1047 LEQCKRELHVLERKQPNIREkVVVKELIKLEKNPEMLKSV----RTLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIE 1122
Cdd:COG4717 48 LERLEKEADELFKPQGRKPE-LNLKELKELEEELKEAEEKeeeyAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1123 TAEPkiiVKEVKQVEQdpELLRESSKLKTLIEEERsknltltgELGELQSQYSIAEKQkpRIEVKERVNEIF-LVDPETE 1201
Cdd:COG4717 127 LLPL---YQELEALEA--ELAELPERLEELEERLE--------ELRELEEELEELEAE--LAELQEELEELLeQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1202 QQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEVIKHEKSPEILR------------------- 1262
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLliaaallallglggsllsl 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1263 -----EIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYENDPLLEKEADR-LRQEVRNMSQ 1336
Cdd:COG4717 272 iltiaGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLeLLDRIEELQE 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1337 KRRAAEDAIYDLQNKYMLLERRKpeekvvvqevILTQKDPKLRDEHnrlsRSLDEEVSNRRRLERDVQQLRALVEEQEKL 1416
Cdd:COG4717 352 LLREAEELEEELQLEELEQEIAA----------LLAEAGVEDEEEL----RAALEQAEEYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1417 LSFQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKI--IMEEVVKLEKDpvleQSASNLRLELDREKMEVLNLQRECK 1494
Cdd:COG4717 418 LEELLEALDEEELEEELEELEEELEELEEELEELREELaeLEAELEQLEED----GELAELLQELEELKAELRELAEEWA 493
|
490
....*....|...
gi 694834822 1495 NLQMQVDVLQKTK 1507
Cdd:COG4717 494 ALKLALELLEEAR 506
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1081-1670 |
1.95e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1081 EMLKSVRTLQLQIDEETFKRKSAEEAIVKVKNKIEEVE---RLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEER 1157
Cdd:TIGR04523 37 QLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNnkiKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1158 SKNLTLTGELGELQSQysiaeKQKPRIEVKERVNEIFLVDPETEQ---QIAHLKRELQEVTLKRTKIESEVEEALAELNA 1234
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQ-----KKENKKNIDKFLTEIKKKEKELEKlnnKYNDLKKQKEELENELNLLEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1235 LRSQKPVVELK-EVIEEVIKHEKSpeilreidrLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVN-KEVI 1312
Cdd:TIGR04523 192 IKNKLLKLELLlSNLKKKIQKNKS---------LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQlKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1313 RYENDPLLEKEadrlrQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILTQKDPKLRDEHNRLSRSldee 1392
Cdd:TIGR04523 263 NKIKKQLSEKQ-----KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQN---- 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1393 VSNRRRLERDVQQLralveEQEKLLSFQEDRSKRLALEKEMRQTtlrikeleespapvqEKIIMEEVVKLEKDPVLEQSA 1472
Cdd:TIGR04523 334 NKIISQLNEQISQL-----KKELTNSESENSEKQRELEEKQNEI---------------EKLKKENQSYKQEIKNLESQI 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1473 SNLRLELDREKMEVLNLQRECKNLQMQVDVLQKtksqEKTIYKEVIRVEKDRALEserariwelLNRERGAKQKAEEEVR 1552
Cdd:TIGR04523 394 NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK----EIERLKETIIKNNSEIKD---------LTNQDSVKELIIKNLD 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1553 RLREKIE-RAEGMKRTWAREETELQKARnlaiQERANLESELRELERQKQQ---KVLFLREESKLLNQRTENDRQKKKQL 1628
Cdd:TIGR04523 461 NTRESLEtQLKVLSRSINKIKQNLEQKQ----KELKSKEKELKKLNEEKKEleeKVKDLTKKISSLKEKIEKLESEKKEK 536
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 694834822 1629 EHEFSLLEADILrEKDQIYNKERLIRDLQSRVNREEINHETQ 1670
Cdd:TIGR04523 537 ESKISDLEDELN-KDDFELKKENLEKEIDEKNKEIEELKQTQ 577
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1403-1664 |
2.46e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1403 VQQLRALVEEQEKLlSFQEDRSKRLALEKEMRQTTL-RIKELEESPAPVQEKIIMEEVVKLEKDpvleqsasnlRLELDR 1481
Cdd:pfam17380 278 VQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVeRRRKLEEAEKARQAEMDRQAAIYAEQE----------RMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1482 EKmEVLNLQRECKNLQMQvDVLQKTKSQEKTIYKEVIRVEKDRALESERARiWELlnrERGAKQKAEEEVRRLREKIERA 1561
Cdd:pfam17380 347 ER-ELERIRQEERKRELE-RIRQEEIAMEISRMRELERLQMERQQKNERVR-QEL---EAARKVKILEEERQRKIQQQKV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1562 EGMKRTWAREETELQKARNLAIQERANLES-ELRELERQKQQKVLFLREES----KLLNQRTENDR-----QKKKQLEHE 1631
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEEERAREMERvRLEEQERQQQVERLRQQEEErkrkKLELEKEKRDRkraeeQRRKILEKE 500
|
250 260 270
....*....|....*....|....*....|...
gi 694834822 1632 FSLLEADILREKDQIYNKERLIRDLQSRVNREE 1664
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1269-1596 |
2.68e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1269 QQLNELVN----TNGRTQEQLIRLQGERDEWKRERSKVETKLVNkeviryendplLEKEADRLRQEVRNMSQKRRAAEDA 1344
Cdd:pfam07888 41 QERAELLQaqeaANRQREKEKERYKRDREQWERQRRELESRVAE-----------LKEELRQSREKHEELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1345 IYDLQNKYMLLERRKPEEKVVVQEV-----ILTQKD-------PKLRDEHNRLSRSLDEEVSNRRRLERDVQQ----LRA 1408
Cdd:pfam07888 110 SEELSEEKDALLAQRAAHEARIRELeedikTLTQRVleretelERMKERAKKAGAQRKEEEAERKQLQAKLQQteeeLRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1409 LVEEQEKLLSFQEDRSKRlALEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKL-EKDPVLEQSASNLRLEL-------D 1480
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQ-VLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLqERLNASERKVEGLGEELssmaaqrD 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1481 REKMEV---------LNLQRECKNLQMQVDvlQKTKSQEKTIYKEVIRVEKDR--ALESERARIWELLNRERGAKQKAEE 1549
Cdd:pfam07888 269 RTQAELhqarlqaaqLTLQLADASLALREG--RARWAQERETLQQSAEADKDRieKLSAELQRLEERLQEERMEREKLEV 346
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 694834822 1550 EVRRLREKIERAEGMKRtwaREETELQKARNLAIQERANLESELREL 1596
Cdd:pfam07888 347 ELGREKDCNRVQLSESR---RELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
147-320 |
3.13e-05 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 47.06 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 147 LDQKMKQVNAGQYGPGMSELEKQIAEHNILQKEIEAYGLQIKNLR-----------------SGDVADLKSQYKDLLKAS 209
Cdd:cd00176 16 LSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNelgeqlieeghpdaeeiQERLEELNQRWEELRELA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 210 IWRGQSLG---SLYHHLQGCTKELGYLTDQQTRILKQDWSDQMMDVQSVRREYEDFKsNELLSQEEFVNHLQDDGDRMIE 286
Cdd:cd00176 96 EERRQRLEealDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELE-EELEAHEPRLKSLNELAEELLE 174
|
170 180 190
....*....|....*....|....*....|....*
gi 694834822 287 LKHPAVKP-IQAHQEALKNEWQNFLNLCICQESQL 320
Cdd:cd00176 175 EGHPDADEeIEEKLEELNERWEELLELAEERQKKL 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1166-1360 |
4.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1166 ELGELQSQysIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKpvVELK 1245
Cdd:COG4942 28 ELEQLQQE--IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL--EAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1246 EVIEEVIK------------------------------HEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEW 1295
Cdd:COG4942 104 EELAELLRalyrlgrqpplalllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694834822 1296 KRERSKVETKLVNKEVIRYEndplLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKP 1360
Cdd:COG4942 184 EEERAALEALKAERQKLLAR----LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1377-1664 |
5.23e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 5.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1377 KLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRL-----------ALEKEMRQTTLRIKELEE 1445
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkelkekaeeyiKLSEFYEEYLDELREIEK 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1446 SPAPVQEKI--IMEEVVKLEKDPVLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIrVEKD 1523
Cdd:PRK03918 315 RLSRLEEEIngIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL-EKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1524 RALESERARIWELLNRERGAKQKAEEEVRRLREKIERAEGMKR---TWAREETELQKARNLA--IQERANLESELRELER 1598
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpVCGRELTEEHRKELLEeyTAELKRIEKELKEIEE 473
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694834822 1599 QKQQKVLFLREESKLLNQRTENDRQKK-----KQLEHEFSLLEADILREKDQIYN--KERL------IRDLQSRVNREE 1664
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKElaeqlKELEEKLKKYNLEELEKKAEEYEklKEKLiklkgeIKSLKKELEKLE 552
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1084-1334 |
5.44e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.39 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1084 KSVRTLQ----LQIDE-----ETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIE 1154
Cdd:PRK05771 20 EVLEALHelgvVHIEDlkeelSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1155 EERSKnltLTGELGELQSQYSIAEKQKPRIEVKERVNeiflVDPETEQQIAHLKRELqeVTLKRTKIESEVEEALAELNA 1234
Cdd:PRK05771 100 KEIKE---LEEEISELENEIKELEQEIERLEPWGNFD----LDLSLLLGFKYVSVFV--GTVPEDKLEELKLESDVENVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1235 LRSQKP------VVELKEVIEEVIkhekspEILREIDRLKQQLNELvntnGRTQEQLIRLQGERDEWKRERSKVETKLVN 1308
Cdd:PRK05771 171 YISTDKgyvyvvVVVLKELSDEVE------EELKKLGFERLELEEE----GTPSELIREIKEELEEIEKERESLLEELKE 240
|
250 260
....*....|....*....|....*....
gi 694834822 1309 KEViRYENDPLLEKE---ADRLRQEVRNM 1334
Cdd:PRK05771 241 LAK-KYLEELLALYEyleIELERAEALSK 268
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1420-1645 |
6.11e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 6.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1420 QEDRSKRLALEKEMRQTTLRIKELEEspapvQEKIIMEEVVKLEkdpvleQSASNLRLELDREKMEVLNLQRECKNLQMQ 1499
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----EEKALLKQLAALE------RRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1500 VDVLQKTKSQEKTIYKEVIRVekdrALESERARIWELLNRERGAKQKA------EEEVRRLREKIERAEGMKRTWAREET 1573
Cdd:COG4942 92 IAELRAELEAQKEELAELLRA----LYRLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694834822 1574 ELQKARNLAIQERANLESELRELERQKQQK---VLFLREESKLLNQRTENDRQKKKQLEHEFSLLEADILREKDQ 1645
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
993-1657 |
6.17e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 993 KLAQMESEKKVIPAQLLTKE----------ITKIEKDPSLDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQP 1062
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEkelknldknlNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1063 NIREKVVVK--ELIKLEKNpemLKSVRTLQLQIDEETFKRksaEEAIVKVKNKIEEVERLIETAEPK--IIVKEVKQVEQ 1138
Cdd:TIGR04523 114 NDKEQKNKLevELNKLEKQ---KKENKKNIDKFLTEIKKK---EKELEKLNNKYNDLKKQKEELENElnLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1139 DPELLR-ESSKLKTL---IEEERSKNLTLTGELGELQSQYSIAEKQKprIEVKERVNEIFLVDPETEQQIAHLKRELQEV 1214
Cdd:TIGR04523 188 NIDKIKnKLLKLELLlsnLKKKIQKNKSLESQISELKKQNNQLKDNI--EKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1215 TLKRTKIESEVEEALAELNALRSQkpVVELKEVIEEvIKHEKSPEILREI-DRLKQQLNELVNTngrtQEQLIRLQGERD 1293
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQ--LNQLKSEISD-LNNQKEQDWNKELkSELKNQEKKLEEI----QNQISQNNKIIS 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1294 EWKRERSKVETKLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRraaeDAIYDLQNKYMLLERrkpeeKVVVQEVILTQ 1373
Cdd:TIGR04523 339 QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYK----QEIKNLESQINDLES-----KIQNQEKLNQQ 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1374 KDPKLRDEHnrlsrsldeevSNRRRLERDVQQLRALVEEQEKLLSfqedrskrlALEKEMRQTTLRIKELEESPAPVQEK 1453
Cdd:TIGR04523 410 KDEQIKKLQ-----------QEKELLEKEIERLKETIIKNNSEIK---------DLTNQDSVKELIIKNLDNTRESLETQ 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1454 IimeEVVKLEKDPVlEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKtiykevirvEKDRALESERARI 1533
Cdd:TIGR04523 470 L---KVLSRSINKI-KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK---------EKIEKLESEKKEK 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1534 wellnrergakqkaEEEVRRLREKIERaegmkrtwarEETELQKArnlaiqeraNLESELRElerqKQQKVLFLREESKL 1613
Cdd:TIGR04523 537 --------------ESKISDLEDELNK----------DDFELKKE---------NLEKEIDE----KNKEIEELKQTQKS 579
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 694834822 1614 LNQRTENDRQKKKQLEHEFSLLEADILREKDQIYNKERLIRDLQ 1657
Cdd:TIGR04523 580 LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
767-1333 |
6.57e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 767 QVKTTDGPSQINYKLQAQKRLVEEIESKEPEKNAVVRLSRNVQSTLNDYELQagkysssldptltdfaakrlrvtplQES 846
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER-------------------------REE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 847 IQAQENDVTKLYMELAAENKQqlsRLEFAKKIVEKKEVHEDIEAVHKQAQqsENKAATSRESEGLKSQLEEERRKVAKIE 926
Cdd:PRK02224 253 LETLEAEIEDLRETIAETERE---REELAEEVRDLRERLEELEEERDDLL--AEAGLDDADAEAVEARREELEDRDEELR 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 927 EDLEEHRNKLLMLKTQ-----KPIERVEEKEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEK 1001
Cdd:PRK02224 328 DRLEECRVAAQAHNEEaeslrEDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1002 KVIPAQLLTKEITKIEKDPSLDSQAASLRQEIKRLQE-ESLAAASKLEQCKREL----HV------------LERKQPNI 1064
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEaEALLEAGKCPECGQPVegspHVetieedrerveeLEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1065 REKVVvkeliKLEKNPEMLKSVRTLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEpkiivKEVKQVEQDPELLR 1144
Cdd:PRK02224 488 EEEVE-----EVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR-----ERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1145 ES-SKLKTLIEEERSKNLTLTGELGELqsqysiaekqKPRIEVKERVNEIFLVDPETEQQIAHL--KRE----------- 1210
Cdd:PRK02224 558 EAaAEAEEEAEEAREEVAELNSKLAEL----------KERIESLERIRTLLAAIADAEDEIERLreKREalaelnderre 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1211 -LQEVTLKRTKIESEVEEALAElnALRSQKPvvELKEVIEEVIKhekspeilrEIDRLKQQLNELVNTNGRTQEQLIRLQ 1289
Cdd:PRK02224 628 rLAEKRERKRELEAEFDEARIE--EAREDKE--RAEEYLEQVEE---------KLDELREERDDLQAEIGAVENELEELE 694
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 694834822 1290 GERDewkrERSKVETKLVNKEVIrYENDPLLEKEADRLRQEVRN 1333
Cdd:PRK02224 695 ELRE----RREALENRVEALEAL-YDEAEELESMYGDLRAELRQ 733
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1396-1686 |
7.69e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 7.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1396 RRRLERDVQQLRALVEEQEKLLSFQEDRSkrlalEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLEKDP---VLEQSA 1472
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAELR-----ELELALLVLRLEELREELEELQEELKEAEEELEELTAelqELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1473 SNLRLELDREKMEVLNLQRECKNLQmqvdVLQKTKSQEKTIYKEvirveKDRALESERARIWELLNRERGAKQKAEEEVR 1552
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALA----NEISRLEQQKQILRE-----RLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1553 RLREKIEraegmkrtwareetELQKARNLAIQERANLESELRELERQKQ----------QKVLFLREESKLLNQRTENDR 1622
Cdd:TIGR02168 341 ELEEKLE--------------ELKEELESLEAELEELEAELEELESRLEeleeqletlrSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694834822 1623 QKKKQLEHEFSLLEADILREKDQIYNKERliRDLQSRVN-REEINHETQMRETNLSTKISILDPE 1686
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEeLEEELEELQEELERLEEALEELREE 469
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
977-1382 |
8.02e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 977 GKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEITKIEKDPSLDSQAASLRQEIKRlqEESLAAASKLEQCKRELHV 1056
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEK--AESELAKEEILRRQLEIKK 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1057 LERKQPNIREKVVVKELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQV 1136
Cdd:pfam02463 704 KEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKT 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1137 EQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEifLVDPETEQQIAHLKRELQEVTL 1216
Cdd:pfam02463 784 EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA--LELKEEQKLEKLAEEELERLEE 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1217 KRTKIESEVEEALAELNALrsqkpvvELKEVIEEVIKHEKSPEILREIDRLKQQ---LNELVNTNGRTQEQLIRLQGERD 1293
Cdd:pfam02463 862 EITKEELLQELLLKEEELE-------EQKLKDELESKEEKEKEEKKELEEESQKlnlLEEKENEIEERIKEEAEILLKYE 934
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1294 EWKRERSKVETKLVNKEVIRYENDPLLEKEADRLRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVILTQ 1373
Cdd:pfam02463 935 EEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
....*....
gi 694834822 1374 KDPKLRDEH 1382
Cdd:pfam02463 1015 TCQRLKEFL 1023
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1199-1673 |
8.35e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1199 ETEQQIAHLK--RELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEvIKHEKSpEILREIDRLKQQLNELVN 1276
Cdd:COG4913 246 DAREQIELLEpiRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE-LRAELA-RLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1277 T--------NGRTQEQLIRLQGERDEWKRERSKVETKL--VNKEVIRYE-NDPLLEKEADRLRQEVR----NMSQKRRAA 1341
Cdd:COG4913 324 EldeleaqiRGNGGDRLEQLEREIERLERELEERERRRarLEALLAALGlPLPASAEEFAALRAEAAalleALEEELEAL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1342 EDAIYDLQNKYMLLERRKPEekvvvqeviltqkdpkLRDEHNRLSRsldeevsNRRRLERDVQQLRALVEEQEKL----L 1417
Cdd:COG4913 404 EEALAEAEAALRDLRRELRE----------------LEAEIASLER-------RKSNIPARLLALRDALAEALGLdeaeL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1418 SF--------QEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKII---MEEVVKLEKDPVLEQSASNLRLELDR--EKM 1484
Cdd:COG4913 461 PFvgelievrPEEERWRGAIERVLGGFALTLLVPPEHYAAALRWVNrlhLRGRLVYERVRTGLPDPERPRLDPDSlaGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1485 EVLN------LQREcknLQMQVDV--------LQKTK---SQEKTIYKEVIRVEKD--RALESE-------RARIwELLN 1538
Cdd:COG4913 541 DFKPhpfrawLEAE---LGRRFDYvcvdspeeLRRHPraiTRAGQVKGNGTRHEKDdrRRIRSRyvlgfdnRAKL-AALE 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1539 RERgakQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNL--AIQERANLESELRELERQKQQkvlfLREES---KL 1613
Cdd:COG4913 617 AEL---AELEEELAEAEERLEALEAELDALQERREALQRLAEYswDEIDVASAEREIAELEAELER----LDASSddlAA 689
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1614 LNQRTENDRQKKKQLEHEFSLLEADILREKDQIYNKERLIRDLQSRVNREEINHETQMRE 1673
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1263-1464 |
8.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 8.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1263 EIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLV--NKEVIRYEND-PLLEKEADRLRQEVRNMSQKRR 1339
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAalARRIRALEQElAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1340 AAEDAIYDLQNKYMLLERRKPEEkvvvqeVILTQKDPK--------LRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVE 1411
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLA------LLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 694834822 1412 EQEKLLSFQEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLEK 1464
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1218-1674 |
1.57e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1218 RTKIESEVEEALAE-LNALRSqkpvvELKEVIEEVIKHEKSPEILREIdrlKQQLNELVNTNGRTQEQLIRLQGERDEWK 1296
Cdd:PRK02224 193 KAQIEEKEEKDLHErLNGLES-----ELAELDEEIERYEEQREQARET---RDEADEVLEEHEERREELETLEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1297 RERSKVETKLVN-KEVIRYENDPLLEKEADR--LRQEVRNMSQKRRAAEDAIYDLQNKYMLLERRKPEEKVVVQEVI--- 1370
Cdd:PRK02224 265 ETIAETEREREElAEEVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNeea 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1371 ---------LTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKRLALEKEMRQTTL--- 1438
Cdd:PRK02224 345 eslredaddLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERdel 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1439 --RIKELEESPAPVQEKII-MEEVVKLEKDPV----LEQSASNLRLELDREKMEVLNLQREcknlqmqvdvlqKTKSQEK 1511
Cdd:PRK02224 425 reREAELEATLRTARERVEeAEALLEAGKCPEcgqpVEGSPHVETIEEDRERVEELEAELE------------DLEEEVE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1512 TIYKEVIRVEKDRALESERARiweLLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLA--------- 1582
Cdd:PRK02224 493 EVEERLERAEDLVEAEDRIER---LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAaeaeeeaee 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1583 -IQERANLESELREL--ERQKQQKVLFLREESKLLNQRTENDRQKKKQLEhEFSLLEADILREKdqiynKERlIRDLQSR 1659
Cdd:PRK02224 570 aREEVAELNSKLAELkeRIESLERIRTLLAAIADAEDEIERLREKREALA-ELNDERRERLAEK-----RER-KRELEAE 642
|
490
....*....|....*
gi 694834822 1660 VNREEINHETQMRET 1674
Cdd:PRK02224 643 FDEARIEEAREDKER 657
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1682-1707 |
1.58e-04 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 40.54 E-value: 1.58e-04
10 20
....*....|....*....|....*.
gi 694834822 1682 ILDPETGKDMSPYEAYKRGIIDRGQY 1707
Cdd:smart00250 13 IIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
866-1670 |
2.03e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.58 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 866 KQQLSRLEFAKKIVE---KKEVHEDIEAVHKQAQQSENKAATSR---ESEGLKSQL---EEERRKVAKIEEDLEE-HRNK 935
Cdd:TIGR00606 199 GQKVQEHQMELKYLKqykEKACEIRDQITSKEAQLESSREIVKSyenELDPLKNRLkeiEHNLSKIMKLDNEIKAlKSRK 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 936 LLMLKTQKPIERVEEKevIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKlaqmesekkvipAQLLTKEITK 1015
Cdd:TIGR00606 279 KQMEKDNSELELKMEK--VFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKE------------RRLLNQEKTE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1016 IEKDPSLDSQAAslrqeiKRLQEESLAAASKLE--QCKRELHVLERKQPNIREkvvVKELIKLEKNpEMLKSVRTLQLQI 1093
Cdd:TIGR00606 345 LLVEQGRLQLQA------DRHQEHIRARDSLIQslATRLELDGFERGPFSERQ---IKNFHTLVIE-RQEDEAKTAAQLC 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1094 DEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKII--VKEVKQVEQDPELLRESSKLKTLIEEERSKNLTltgELGELQ 1171
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEkkQEELKFVIKELQQLEGSSDRILELDQELRKAER---ELSKAE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1172 SQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVT--LKRTKIESEVEEALAELNA-----LRSQKPVVEL 1244
Cdd:TIGR00606 492 KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTqmEMLTKDKMDKDEQIRKIKSrhsdeLTSLLGYFPN 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1245 KEVIEEVIkHEKSPEILREIDRLKqqlnelvntngRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYE--NDPLLEK 1322
Cdd:TIGR00606 572 KKQLEDWL-HSKSKEINQTRDRLA-----------KLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcGSQDEES 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1323 EADRLRQEVRNMSQKRR--AAEDAIY---------------------------------DLQNKYMLLERRKPEEKVVVQ 1367
Cdd:TIGR00606 640 DLERLKEEIEKSSKQRAmlAGATAVYsqfitqltdenqsccpvcqrvfqteaelqefisDLQSKLRLAPDKLKSTESELK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1368 EV-----ILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLsfqEDRSKRLALEKEMRQTTLRIKE 1442
Cdd:TIGR00606 720 KKekrrdEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL---GTIMPEEESAKVCLTDVTIMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1443 LEESPAPVQEKIIMEevvklekdpVLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVLQKTkSQEKTIYKEVIRvEK 1522
Cdd:TIGR00606 797 FQMELKDVERKIAQQ---------AAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKL-IQDQQEQIQHLK-SK 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1523 DRALESERARIWELLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARnlaiQERANLESELRELERQKQQ 1602
Cdd:TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ----QEKEELISSKETSNKKAQD 941
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694834822 1603 KVLFLREESK--------LLNQRTENDRQKKKQLEHEFSLLEADiLREKDQiyNKERLIRDLqsRVNREEINHETQ 1670
Cdd:TIGR00606 942 KVNDIKEKVKnihgymkdIENKIQDGKDDYLKQKETELNTVNAQ-LEECEK--HQEKINEDM--RLMRQDIDTQKI 1012
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1522-1661 |
2.43e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.73 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1522 KDRALESERARIWEL---LNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQKARNLAIQERANLESELRELER 1598
Cdd:PRK09039 51 KDSALDRLNSQIAELadlLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694834822 1599 QKQQKvlflREESKLLNQRTENDRQKKKQLEhefSLLEADILREKDQiynkERLIRDLQSRVN 1661
Cdd:PRK09039 131 VSARA----LAQVELLNQQIAALRRQLAALE---AALDASEKRDRES----QAKIADLGRRLN 182
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1025-1443 |
2.70e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1025 QAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVvvKELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAE 1104
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL--EKLEKLLQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1105 EAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRI 1184
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1185 EVKERVNEIFLVDPETEQQ---------IAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKPVVELKEVIEEVIKHE 1255
Cdd:COG4717 233 ENELEAAALEERLKEARLLlliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1256 KSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLvNKEVIRYENDPLLEKEADRLRQEVRNMS 1335
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDEEELRAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1336 QKRRAAEDaiydLQNKYMLLERRKPEEKVVVQEVILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEK 1415
Cdd:COG4717 392 EQAEEYQE----LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
410 420
....*....|....*....|....*...
gi 694834822 1416 LLSFQEDRSKRLALEKEMRQTTLRIKEL 1443
Cdd:COG4717 468 DGELAELLQELEELKAELRELAEEWAAL 495
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
963-1518 |
3.01e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 963 ESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIPAQLLTKEI------TKIEKDPSLDSQAASLRQE---- 1032
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllsnlkKKIQKNKSLESQISELKKQnnql 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1033 ---IKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVVVKELiKLEKNPEMLKSVRTL--QLQIDEETFKRKSAEEAI 1107
Cdd:TIGR04523 231 kdnIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK-ELEQNNKKIKELEKQlnQLKSEISDLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1108 VKVKNKIEEVERLIETAEPKIivkeVKQVEQDPELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPriEVK 1187
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQI----SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQ--SYK 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1188 ERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNALRSQKpvVELKEVIEEVIKhekspeilrEIDRL 1267
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI--IKNNSEIKDLTN---------QDSVK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1268 KQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEviryendplleKEADRLRQEVRNMSQKRRAAEDAIYD 1347
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE-----------KELKKLNEEKKELEEKVKDLTKKISS 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1348 LQNKYMLLERRKpeekvvvqevilTQKDPKLRDEHNRLSRslDEEVSNRRRLERDV----QQLRALVEEQEKLLSFQEDR 1423
Cdd:TIGR04523 522 LKEKIEKLESEK------------KEKESKISDLEDELNK--DDFELKKENLEKEIdeknKEIEELKQTQKSLKKKQEEK 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1424 SKRLAlEKEMRQTTLrIKELEEspapvqekiimeevvklekdpvLEQSASNLRLELDREKMEVLNLQRECKNLQMQVDVL 1503
Cdd:TIGR04523 588 QELID-QKEKEKKDL-IKEIEE----------------------KEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
570
....*....|....*
gi 694834822 1504 QKTKSQEKTIYKEVI 1518
Cdd:TIGR04523 644 KQEVKQIKETIKEIR 658
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
843-1046 |
3.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 843 LQESIQAQENDVTKLYMElAAENKQQLSRLEfaKKIVEKKEVHEDIEAvhKQAQQSENKAATSRESEGLKSQLEEERRKV 922
Cdd:COG4942 32 LQQEIAELEKELAALKKE-EKALLKQLAALE--RRIAALARRIRALEQ--ELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 923 AKIEEDLEEH--RNKLLMLKTQKPIERV------------EEKEVIEYYRDPQVEsnLSKMAQQIEEEGKKRQSLQEDIE 988
Cdd:COG4942 107 AELLRALYRLgrQPPLALLLSPEDFLDAvrrlqylkylapARREQAEELRADLAE--LAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694834822 989 VMSQKLAQMESEKKVIPAQLLTKEITKIEKDPSLDSQAASLRQEIKRLQEESLAAASK 1046
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1163-1339 |
4.33e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 4.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1163 LTGELGELQSQYSIAEKQkpRIEVKERVNeifLVDPETEQQIAHlkRELQEVTLKRTKIESEVEEALAELNALRSQkpVV 1242
Cdd:COG3206 180 LEEQLPELRKELEEAEAA--LEEFRQKNG---LVDLSEEAKLLL--QQLSELESQLAEARAELAEAEARLAALRAQ--LG 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1243 ELKEVIEEVIKHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNKEVIRYE----NDP 1318
Cdd:COG3206 251 SGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEalqaREA 330
|
170 180
....*....|....*....|.
gi 694834822 1319 LLEKEADRLRQEVRNMSQKRR 1339
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEA 351
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1929-1964 |
5.31e-04 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 39.39 E-value: 5.31e-04
10 20 30
....*....|....*....|....*....|....*.
gi 694834822 1929 YLEVQHLTGGLIDPKKTGRIPVLEAAQTGMITGDLA 1964
Cdd:smart00250 3 LLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
847-1251 |
5.37e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 5.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 847 IQAQENDVTKLYMELAAENKQQLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLEEERRKVAKIE 926
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 927 EDLEEHRNKLLMLKT-QKPIERVEEK-EVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVI 1004
Cdd:COG4717 153 ERLEELRELEEELEElEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1005 PAQLLTKEITKIEKDPSLDSQAASLRQEIKRLQEESLAAASKL---------------EQCKRELHVLERKQPNIREKVV 1069
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgllallfLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1070 VKELIKLEknpemlksvrtLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKL 1149
Cdd:COG4717 313 LEELEEEE-----------LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1150 KTliEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEAL 1229
Cdd:COG4717 382 ED--EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELE 459
|
410 420
....*....|....*....|..
gi 694834822 1230 AELNALRSQKPVVELKEVIEEV 1251
Cdd:COG4717 460 AELEQLEEDGELAELLQELEEL 481
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1377-1603 |
5.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1377 KLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALVEEQEKLLSFQEDRSKrlALEKEMRQTTLRIKELEESPApVQEKIIM 1456
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--ALEAELAELEKEIAELRAELE-AQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1457 EEVVKLEKdpvlEQSASNLRLELDREkmevlNLQRECKNLQMQVDVLQKTKSQEKTIYKEVIRVEKDRA-LESERARIWE 1535
Cdd:COG4942 108 ELLRALYR----LGRQPPLALLLSPE-----DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAeLEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694834822 1536 LLNRERGAKQKAEEEVRRLREKIERAEGMKRTWAREETELQkarnlaiQERANLESELRELERQKQQK 1603
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ-------QEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1025-1298 |
5.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1025 QAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPnirekvvvkELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAE 1104
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERRE---------ALQRLAEYSWDEIDVASAEREIAELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1105 EAivkvKNKIEEVERLIETAEpkiivKEVKQVEQDpelLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRI 1184
Cdd:COG4913 682 AS----SDDLAALEEQLEELE-----AELEELEEE---LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1185 EVKERVNEIfLVDPETEQQIAHLKRELQEVTLKRTKIESEVEEALAELNAlRSQKPVVELKEVIEEVIKHEkspEILREI 1264
Cdd:COG4913 750 LLEERFAAA-LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNR-EWPAETADLDADLESLPEYL---ALLDRL 824
|
250 260 270
....*....|....*....|....*....|....*....
gi 694834822 1265 D-----RLKQQLNELVNTNgrTQEQLIRLQGERDEWKRE 1298
Cdd:COG4913 825 EedglpEYEERFKELLNEN--SIEFVADLLSKLRRAIRE 861
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1516-1626 |
8.89e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1516 EVIRVEKDRALESERARIWELLNRERGAKQKAEEEVRRLREKIERAEGmkrtwarEETELQKARNLAIQERANLESELRE 1595
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEA-------EVEELEAELEEKDERIERLERELSE 452
|
90 100 110
....*....|....*....|....*....|.
gi 694834822 1596 LERQKQQKVLFLREESKLlnqRTENDRQKKK 1626
Cdd:COG2433 453 ARSEERREIRKDREISRL---DREIERLERE 480
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
743-1139 |
1.06e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.86 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 743 SLTYQQFQNSNEN-----LMFWMNNLPKHQVKTTDGPSQINYKLQaqKRLVEEIESK--EPEKNAVVRLSRNVQST--LN 813
Cdd:pfam05667 83 EIGYQTFLYPNEPdirkiLMFLVEKLPRESSEAADQPVGKSAVLQ--RAIAAAIRSQlaAPWLPPECKPHQRRQGSraLR 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 814 DYELQAGKYSSSLDPTLTDFAAKRLRVTPLQESIQAQENDVTKLYMELAAENKQQLSRLEFAKKIVEKKEVHE---DIEA 890
Cdd:pfam05667 161 PFHTQTLVLPGRKGKTLKNSKELKEFYSEYLPPVTAQPSSRASVVPSLLERNAAELAAAQEWEEEWNSQGLASrltPEEY 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 891 VHKQAQQSENKAATSRESEGLKSQLEEERRKVAKIE--EDLEE------------------HRNKLLMLKTQKPIERVEE 950
Cdd:pfam05667 241 RKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDlaELLSSfsgssttdtgltkgsrftHTEKLQFTNEAPAATSSPP 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 951 KEVI-EYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVipaqlLTKEITKIEKDPSLDSQAASL 1029
Cdd:pfam05667 321 TKVEtEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEE-----LKEQNEELEKQYKVKKKTLDL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1030 RQE----IKRLQEESLAAASKLEQCKRELhvlerkqpnirEKVVVkelikleknpEMLKSVRTLQLQIDEETFKRKSAEE 1105
Cdd:pfam05667 396 LPDaeenIAKLQALVDASAQRLVELAGQW-----------EKHRV----------PLIEEYRALKEAKSNKEDESQRKLE 454
|
410 420 430
....*....|....*....|....*....|....*.
gi 694834822 1106 AIVKVKNKIEEVERLIETAEPKI--IVKEVKQVEQD 1139
Cdd:pfam05667 455 EIKELREKIKEVAEEAKQKEELYkqLVAEYERLPKD 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1524-1664 |
1.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1524 RALESERARIwELLNRERGAKQKAEEEVRRLREKieRAEGMKRTWAREETELQKARNLAIQERANLESELRELERQKQQK 1603
Cdd:COG4913 242 EALEDAREQI-ELLEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694834822 1604 VLFLREESKLLNQRTENDRQKKKQLEHEFSLLEADiLREKDQIYNK-ERLIRDLQSRVNREE 1664
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQLEREIERLERE-LEERERRRARlEALLAALGLPLPASA 379
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
848-1062 |
2.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 848 QAQENDVTKLYMELAAENKQ-QLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENK-AATSRESEGLKSQLEEERRKVAKI 925
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEiAELEKELAALKKEEKALLKQLAALERRIAALARRiRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 926 EEDLEEHRNKL-LMLKTQKPIERVEEKEVI-------------EYYRdpQVESNLSKMAQQIEEEGKKRQSLQEDIEVMS 991
Cdd:COG4942 96 RAELEAQKEELaELLRALYRLGRQPPLALLlspedfldavrrlQYLK--YLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694834822 992 QKLAQMESEKKVIPAQLLTKEITKIEKDPSLDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQP 1062
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1111-1288 |
2.42e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1111 KNKIEEVERlieTAEPKIIVKEVKQveqdpELLRESSkLKTLIEEERSKNLTLTGELGELQSQYSIAEKQKPRIEVKERV 1190
Cdd:COG2433 349 KNKFERVEK---KVPPDVDRDEVKA-----RVIRGLS-IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLE 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1191 NEIflvdPETEQQIAHLKRELQEVtlkrtkiESEVEEALAELNALRSqkpvvelkeviEEVIKHEKSPEIL---REIDRL 1267
Cdd:COG2433 420 EQV----ERLEAEVEELEAELEEK-------DERIERLERELSEARS-----------EERREIRKDREISrldREIERL 477
|
170 180
....*....|....*....|.
gi 694834822 1268 KQQLNELVNTNGRTQEQLIRL 1288
Cdd:COG2433 478 ERELEEERERIEELKRKLERL 498
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1141-1627 |
2.62e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1141 ELLRESSKLKTLIEEERSKNLTLTGELGELQSQYSIAE------------KQKPRIEVKERVNEIFLVDPETEQQIAHLK 1208
Cdd:pfam05557 31 ELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEealreqaelnrlKKKYLEALNKKLNEKESQLADAREVISCLK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1209 RELQEVTLKRTKIESEVEEALAELNALRSQKPvvelkevieevIKHEKSPEILREIDRLKQQLNELVNTNGRTQEQLIRL 1288
Cdd:pfam05557 111 NELSELRRQIQRAELELQSTNSELEELQERLD-----------LLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1289 QgerdewKRERSKVETKLVNKEVIRYendPLLEKEADRLRQE---VRNMSQKRRAAEDAIYDLQNKymlLER-RKPEEKV 1364
Cdd:pfam05557 180 Q------SQEQDSEIVKNSKSELARI---PELEKELERLREHnkhLNENIENKLLLKEEVEDLKRK---LEReEKYREEA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1365 VVQEV----------------------------------ILTQKDPKLRDEHNRLSRSLDEEVSNRRRLERDVQQLRALV 1410
Cdd:pfam05557 248 ATLELekekleqelqswvklaqdtglnlrspedlsrrieQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKI 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1411 EEQEKLLSFQEDRSKRLA-----LEKE---MRQTTLRI-KELEESPAPVQEKIIMEEVVKLEKDPVLEQSASNLRLELDR 1481
Cdd:pfam05557 328 EDLNKKLKRHKALVRRLQrrvllLTKErdgYRAILESYdKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAE 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1482 EKMEVLNLQ-----RECKNLQMQVDVLQKTKSQEK--TIYKEV--IRVEKDRALESERARIWELLNRE-RG--------- 1542
Cdd:pfam05557 408 EELGGYKQQaqtleRELQALRQQESLADPSYSKEEvdSLRRKLetLELERQRLREQKNELEMELERRClQGdydpkktkv 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1543 ----------AKQKAEEEVRRLREKIERaegMKRTWAREETELQKARNLAIQERANLESELRELERQkqqkvlflREESK 1612
Cdd:pfam05557 488 lhlsmnpaaeAYQQRKNQLEKLQAEIER---LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKE--------LESAE 556
|
570
....*....|....*
gi 694834822 1613 LLNQRTENDRQKKKQ 1627
Cdd:pfam05557 557 LKNQRLKEVFQAKIQ 571
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
600-1122 |
4.01e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 600 LPVTLNALRRKYNDVNMLSSLYNEKAKAAlnlETQIENTDKIISTFEAKLAQdsiipaspnaLQDRANDLQKMKRDLVAQ 679
Cdd:PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQA---RETRDEADEVLEEHEERREE----------LETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 680 EDCVLKLNRGLKDAEHSCSAVQNNFQEYCPDLPRQKREVQVLNDRYHAVADQLDQREKTLRNISLTYQQFQNSNENLMFW 759
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 760 MNNLPKHQVKTTDGPSQINYKLQAQKrlvEEIESKEPEKNAVVRLSRNVQSTLNDYELQAGKYSSSLDPTLTDFAAKRLR 839
Cdd:PRK02224 351 ADDLEERAEELREEAAELESELEEAR---EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 840 VTPLQESIQAQENDVTKLYMELAA----ENKQQLSRLEFAKKIVEKKEVHEDIEA----VHKQAQQSENKAATSRESEGL 911
Cdd:PRK02224 428 EAELEATLRTARERVEEAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAeledLEEEVEEVEERLERAEDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 912 KSQLEEERRKVAKIEEDLEEHRnkllmlktqkpiERVEEKEVieyyrdpQVESnLSKMAQQIEEEG----KKRQSLQEDI 987
Cdd:PRK02224 508 EDRIERLEERREDLEELIAERR------------ETIEEKRE-------RAEE-LRERAAELEAEAeekrEAAAEAEEEA 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 988 EVMSQKLAQMESEKkvipaQLLTKEITKIEKDPSLDSQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREK 1067
Cdd:PRK02224 568 EEAREEVAELNSKL-----AELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 694834822 1068 VvvkELIKLEKNPEMLKSVRTLQLQIDEE----TFKRKSAEEAIVKVKNKIEEVERLIE 1122
Cdd:PRK02224 643 F---DEARIEEAREDKERAEEYLEQVEEKldelREERDDLQAEIGAVENELEELEELRE 698
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
874-1047 |
4.13e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 874 FAKKIVEKKEVHEDIEAVhKQAQQSENKAATSRESEGLKSQLEEERRKvAKIEEDLEEHRNKLlmlktQKPIERVEEKEv 953
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAK-RILEEAKKEAEAIKKEALLEAKEEIHKLR-NEFEKELRERRNEL-----QKLEKRLLQKE- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 954 ieyyrdpqveSNLSKMAQQIEeegKKRQSLQEDIEVMSQKLAQMESEKKVIpAQLLTKEITKIEKDPSLDSQAAslRQEI 1033
Cdd:PRK12704 96 ----------ENLDRKLELLE---KREEELEKKEKELEQKQQELEKKEEEL-EELIEEQLQELERISGLTAEEA--KEIL 159
|
170
....*....|....*
gi 694834822 1034 -KRLQEESLAAASKL 1047
Cdd:PRK12704 160 lEKVEEEARHEAAVL 174
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
872-1111 |
4.29e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 41.92 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 872 LEFAKKIVEKKEVheDIEAVHKQAQQSENKAATSRESEGLKSQlEEERRKVAKIEEDLEEHRNKLLMLKTQKPIERVEEK 951
Cdd:NF033838 176 LEIAESDVEVKKA--ELELVKEEAKEPRDEEKIKQAKAKVESK-KAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 952 EVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKL--AQMESEKKVIPAQLLTKEITKIEKDPSLDSQAASL 1029
Cdd:NF033838 253 VATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLpsPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYP 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1030 RQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKV-VVKELIKLEK-NPEMLKSVRTlQLQIDEETFKRKSAEEAI 1107
Cdd:NF033838 333 TNTYKTLELEIAESDVKVKEAELELVKEEAKEPRNEEKIkQAKAKVESKKaEATRLEKIKT-DRKKAEEEAKRKAAEEDK 411
|
....
gi 694834822 1108 VKVK 1111
Cdd:NF033838 412 VKEK 415
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1342-1492 |
5.48e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1342 EDAIYDLQNKYMLLERRKPEEKVVVQEVILTQKDPKLRdehnrlsrsldeevsnrrRLERDVQQLRALVEEQEKLLSFQE 1421
Cdd:COG2433 379 EEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIR------------------RLEEQVERLEAEVEELEAELEEKD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694834822 1422 DRSKRLALEKEMRQTTLRIKELEEspapvqekiimEEVVKLEKDpvleqsASNLRLELDREKMEVLNLQRE 1492
Cdd:COG2433 441 ERIERLERELSEARSEERREIRKD-----------REISRLDRE------IERLERELEEERERIEELKRK 494
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
844-1017 |
5.81e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 844 QESIQAQENDVTKLYMELAAENKQQLSRLE------FAKKIVEKKEVHEDIEAVHKQAQQSENKAATSRESEGLKSQLEE 917
Cdd:pfam17380 412 QRKIQQQKVEMEQIRAEQEEARQREVRRLEeerareMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEE 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 918 ERRKVakIEEDLEEHRNKLL------------MLKTQKPIERVEEKEVIEYYRDPQVESNLSKMAQQ----IEEEGKKRQ 981
Cdd:pfam17380 492 QRRKI--LEKELEERKQAMIeeerkrkllekeMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEqmrkATEERSRLE 569
|
170 180 190
....*....|....*....|....*....|....*.
gi 694834822 982 SLQEDIEVMSQkLAQMESEKKVIPAqllTKEITKIE 1017
Cdd:pfam17380 570 AMEREREMMRQ-IVESEKARAEYEA---TTPITTIK 601
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1007-1159 |
5.99e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1007 QLLTKEITKIEKdpsldsQAASLRQEIKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVVVKElIKLEKNPEMLKSV 1086
Cdd:COG1579 13 QELDSELDRLEH------RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVE-ARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694834822 1087 RT------LQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKIIVKEVKQVEQDPELLRESSKLKTLIEEERSK 1159
Cdd:COG1579 86 RNnkeyeaLQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
963-1515 |
6.61e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 963 ESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQME--SEKKVIPAQLLTKEITKIEKDPSLDSQA--------ASLRQE 1032
Cdd:pfam05557 33 EKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEeaLREQAELNRLKKKYLEALNKKLNEKESQladareviSCLKNE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1033 IKRLQEESLAAASKLEQCKRELHVLERKQPNIREKVvvKELIKLEKNPEM-LKSVRTLQLQIDEETFKRKSAEEAIVKVK 1111
Cdd:pfam05557 113 LSELRRQIQRAELELQSTNSELEELQERLDLLKAKA--SEAEQLRQNLEKqQSSLAEAEQRIKELEFEIQSQEQDSEIVK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1112 NKIEEVERLIEtaepkiIVKEVKQVEQDPELLRESSKLKTLIEEersknltltgELGELQSQYSIAEKQKPRIEVKERVN 1191
Cdd:pfam05557 191 NSKSELARIPE------LEKELERLREHNKHLNENIENKLLLKE----------EVEDLKRKLEREEKYREEAATLELEK 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1192 EiflvdpeteqqiaHLKRELQ--EVTLKRTKIESEVEEALAE--LNALRSQKPVVELKEVIEEVIKHEKS--PEILREID 1265
Cdd:pfam05557 255 E-------------KLEQELQswVKLAQDTGLNLRSPEDLSRriEQLQQREIVLKEENSSLTSSARQLEKarRELEQELA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1266 RLKQQLNELVNTNGRTQEQLIRLQGERDEWKRERSKVETKLVNkevirYENDpLLEKEADrlrqevRNMSQKRRAAEDAI 1345
Cdd:pfam05557 322 QYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILES-----YDKE-LTMSNYS------PQLLERIEEAEDMT 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1346 YDLQNKYMLLERR--KPEEKVVVQEVILTQKDPKL----RDEHNRLSRSLDEEVSNrrrLERDVQQLRALVEEQEKLLSF 1419
Cdd:pfam05557 390 QKMQAHNEEMEAQlsVAEEELGGYKQQAQTLERELqalrQQESLADPSYSKEEVDS---LRRKLETLELERQRLREQKNE 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1420 QEDRSKRLALEKEMRQTTLRIKELEESPAPVQEKIIMEEVVKLEKDpVLEQSASNLRLELDREKMEVLNLQRECKNLQMQ 1499
Cdd:pfam05557 467 LEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAE-IERLKRLLKKLEDDLEQVLRLPETTSTMNFKEV 545
|
570
....*....|....*.
gi 694834822 1500 VDVLQKTKSQEKTIYK 1515
Cdd:pfam05557 546 LDLRKELESAELKNQR 561
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
902-1274 |
7.35e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.38 E-value: 7.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 902 AATSRESEGLKSQLEEERRKVAKIE-EDLEEHRnkllMLKTQKpIERVEEKEVIeyyrDPQVESNLSKmaqqieEEGKKR 980
Cdd:PLN03229 365 ADPSWTSQQIKIAINENMDELGKMDtEELLKHR----MLKFRK-IGGFQEGVPV----DPERKVNMKK------REAVKT 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 981 QS--LQEDIEVMSQKLAQMESEKKVIPAQLLTKEITKIEKDPSLD----SQAASLRQEIKRLQEESLAAASKleqcKREL 1054
Cdd:PLN03229 430 PVreLEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEyteaVIAMGLQERLENLREEFSKANSQ----DQLM 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1055 HvlerkqPNIREKVvvkELIKLEKNPEMLKSVRTLQLQIDEETFKRKSAEEAIVKVKNKIEEVERLIETAEPKII----V 1130
Cdd:PLN03229 506 H------PVLMEKI---EKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMdrpeI 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1131 KEVKQVEQDPELLRESSKLKTLIEEERSKNLTLTGELG-ELQSQYSIAEKQKPRIEVKERVNEIFLVDPETEQQIAHLKR 1209
Cdd:PLN03229 577 KEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIElELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNE 656
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1210 ELQ---EVTLKRTKIESEVEEALAELnALRSQKPVVELKEVIEEvIKHEKSPEILREID--RLKQQLNEL 1274
Cdd:PLN03229 657 EINkkiERVIRSSDLKSKIELLKLEV-AKASKTPDVTEKEKIEA-LEQQIKQKIAEALNssELKEKFEEL 724
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
843-1277 |
8.00e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 843 LQESIQAQENDVTKLYMELAAENKQQLSRLEFAKKIVEKKEVHEDIEAVHKQAQQSENKaatsresEGLKSQLEEERRKV 922
Cdd:COG5022 915 LSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEY-------EDLLKKSTILVREG 987
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 923 AKIEEDLEEHRNKLLMLKTQKPIERVEEKEVIEYYRDPQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKK 1002
Cdd:COG5022 988 NKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYK 1067
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1003 VIP----------AQLLTKEITKIE----KDPSLDSQAASLRQEIKRLQeESLAAASKLEQCKRELHVLERKQPNIreKV 1068
Cdd:COG5022 1068 ALKlrrensllddKQLYQLESTENLlktiNVKDLEVTNRNLVKPANVLQ-FIVAQMIKLNLLQEISKFLSQLVNTL--EP 1144
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1069 VVKELIKLEKNPEMLKSVRTLQ--LQID--EETFKRKSAEEAIVKVKNKIEEVErlIETAEPKIIVKEVKqveqDPELLR 1144
Cdd:COG5022 1145 VFQKLSVLQLELDGLFWEANLEalPSPPpfAALSEKRLYQSALYDEKSKLSSSE--VNDLKNELIALFSK----IFSGWP 1218
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1145 ESSKLKTLIEEERskNLTLTGELGELQSQYSIaEKQKPRIEVKERVNEiFLVDPETEQQIAHLKRELQEVTLKRTKIESE 1224
Cdd:COG5022 1219 RGDKLKKLISEGW--VPTEYSTSLKGFNNLNK-KFDTPASMSNEKLLS-LLNSIDNLLSSYKLEEEVLPATINSLLQYIN 1294
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 694834822 1225 VEEAlaelNALRSQKPVVELKEV--IEEVIKHEKSPEILREIDRLKQQLNELVNT 1277
Cdd:COG5022 1295 VGLF----NALRTKASSLRWKSAteVNYNSEELDDWCREFEISDVDEELEELIQA 1345
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
782-1005 |
8.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 8.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 782 QAQKRLVEEIESKEPEKNAVVRLSRNVQSTLNDYELQAGKYSSSLDPTLTDFAAKRLRVTPLQESIQAQENDVTKLYMEL 861
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 862 AAENK--QQLSRLEFAKKIVEKKEVHEDIEAVH-------KQAQQSENKAATSRESEGLKSQLEEERRKVAKIEEDLEEH 932
Cdd:COG4942 107 AELLRalYRLGRQPPLALLLSPEDFLDAVRRLQylkylapARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694834822 933 RNKLLMLKTQKpierveeKEVIEyyrdpQVESNLSKMAQQIEEEGKKRQSLQEDIEVMSQKLAQMESEKKVIP 1005
Cdd:COG4942 187 RAALEALKAER-------QKLLA-----RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
1520-1645 |
8.02e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 41.09 E-value: 8.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1520 VEKDRALESERARIW-ELLNRERGAKQKAEEEVRRLREKI----ERAEGmKRTWAREETELQKARNLAIQERANLESE-- 1592
Cdd:pfam15709 350 VERKRREQEEQRRLQqEQLERAEKMREELELEQQRRFEEIrlrkQRLEE-ERQRQEEEERKQRLQLQAAQERARQQQEef 428
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694834822 1593 ---LRELERQKQQKVL---------------FLREESKLLNQRTENDR---QKKKQLEHEFSLLEADILREKDQ 1645
Cdd:pfam15709 429 rrkLQELQRKKQQEEAeraeaekqrqkelemQLAEEQKRLMEMAEEERleyQRQKQEAEEKARLEAEERRQKEE 502
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
1255-1599 |
8.23e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 41.20 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1255 EKSPEILREIDRLKQQLNELVNTNGRTQEQLIRLQGERD----EWKRERSKVETKLVNKEVIryENDPLLEKEADRLRQE 1330
Cdd:pfam13166 89 EESIEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEkleaDFLDECWKKIKRKKNSALS--EALNGFKYEANFKSRL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1331 VRNMSQKRRAAeDAIYDLQNKYMLLERRKPEEKVVVQEVILTQKDPKLRDEHNRLSRSLD------EEVSNRRRLERDVQ 1404
Cdd:pfam13166 167 LREIEKDNFNA-GVLLSDEDRKAALATVFSDNKPEIAPLTFNVIDFDALEKAEILIQKVIgkssaiEELIKNPDLADWVE 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1405 QLRALVEEQEKLLSF-----QEDRSKRLA--LEKEMRQTTLRIKELEESpapvqekiimeevVKLEKDPVLEQ--SASNL 1475
Cdd:pfam13166 246 QGLELHKAHLDTCPFcgqplPAERKAALEahFDDEFTEFQNRLQKLIEK-------------VESAISSLLAQlpAVSDL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1476 RLELDREKMEVLNLQRECKNLQMQVDVLQKTKSQEKT-IYKEV-IRVEKDRALE--SERARIWELLNRERGAKQKAEEEV 1551
Cdd:pfam13166 313 ASLLSAFELDVEDIESEAEVLNSQLDGLRRALEAKRKdPFKSIeLDSVDAKIESinDLVASINELIAKHNEITDNFEEEK 392
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1552 RRLREKIERAE---------GMKRTWAREE---TELQKARNLAIQERANLESELRELERQ 1599
Cdd:pfam13166 393 NKAKKKLRLHLveefkseidEYKDKYAGLEkaiNSLEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1382-1637 |
9.72e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1382 HNRLSRSLDEEVSNRRRLERDVQQLR---ALVEE----QEKLLSFQED------------------RSKRLALEKEMRQT 1436
Cdd:PRK04863 309 LVEMARELAELNEAESDLEQDYQAASdhlNLVQTalrqQEKIERYQADleeleerleeqnevveeaDEQQEENEARAEAA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1437 TLRIKELEESPAPVQEKIIM---------------EEVVKLEKDPVLEQSASNLRLELDREKMEVLNLQRecKNLQMQVD 1501
Cdd:PRK04863 389 EEEVDELKSQLADYQQALDVqqtraiqyqqavqalERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL--LSLEQKLS 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694834822 1502 VLQKTKSQEKTIYKEVIRV--EKDRALESERARiwELLNRERGAKQKAEEEV---RRLREkIERAEGMKRTWAREETELQ 1576
Cdd:PRK04863 467 VAQAAHSQFEQAYQLVRKIagEVSRSEAWDVAR--ELLRRLREQRHLAEQLQqlrMRLSE-LEQRLRQQQRAERLLAEFC 543
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694834822 1577 KARNLAIQERANLESELRELERQKQQkvlfLREESKLLNQRTENDRQKKKQLEHEFSLLEA 1637
Cdd:PRK04863 544 KRLGKNLDDEDELEQLQEELEARLES----LSESVSEARERRMALRQQLEQLQARIQRLAA 600
|
|
| |
