|
Name |
Accession |
Description |
Interval |
E-value |
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
1-51 |
1.11e-18 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
:
Pssm-ID: 395007 Cd Length: 49 Bit Score: 79.32 E-value: 1.11e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGFFPDcvPCHQC 51
Cdd:pfam00053 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSD--PPQGC 49
|
|
| Smc super family |
cl34174 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
319-490 |
3.61e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
The actual alignment was detected with superfamily member COG1196:
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 319 DILSALAEVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEAVANEVL 398
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 399 NMEMPSTPQQ------LQALTEDIRERVESLSDVEVILQQSAGDIARAEMLLEEAKKASKGATDVKVTADMVKAALEEAE 472
Cdd:COG1196 369 EAEAELAEAEeeleelAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
170
....*....|....*...
gi 698440606 473 KAQNAAEKAIKQADEDIK 490
Cdd:COG1196 449 EEEAELEEEEEALLELLA 466
|
|
| Mplasa_alph_rch super family |
cl37461 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
92-250 |
5.80e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
The actual alignment was detected with superfamily member TIGR04523:
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 92 LEEKLSEIKTIIAQNpaAEPLKNIGNL----------FEEAEKLTADVTVKIADIE----------DNLSALAVKSNSTD 151
Cdd:TIGR04523 365 LEEKQNEIEKLKKEN--QSYKQEIKNLesqindleskIQNQEKLNQQKDEQIKKLQqekellekeiERLKETIIKNNSEI 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 152 TDL----SALETDAKSLDRVVKELAEQLEFIKIS--DVRGALDSITKYF------HMSLEAEVR-VNASTVYPDSAVELS 218
Cdd:TIGR04523 443 KDLtnqdSVKELIIKNLDNTRESLETQLKVLSRSinKIKQNLEQKQKELkskekeLKKLNEEKKeLEEKVKDLTKKISSL 522
|
170 180 190
....*....|....*....|....*....|..
gi 698440606 219 AQTRQEVEDLINEKEAQFKAKQEEQSRLLDEL 250
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
1-51 |
1.11e-18 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 79.32 E-value: 1.11e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGFFPDcvPCHQC 51
Cdd:pfam00053 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSD--PPQGC 49
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
1-49 |
7.89e-18 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 77.01 E-value: 7.89e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGFFPDCVPCH 49
Cdd:cd00055 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
1-45 |
6.81e-17 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 74.27 E-value: 6.81e-17
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGF-FPDC 45
Cdd:smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDgPPGC 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
319-490 |
3.61e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 319 DILSALAEVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEAVANEVL 398
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 399 NMEMPSTPQQ------LQALTEDIRERVESLSDVEVILQQSAGDIARAEMLLEEAKKASKGATDVKVTADMVKAALEEAE 472
Cdd:COG1196 369 EAEAELAEAEeeleelAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
170
....*....|....*...
gi 698440606 473 KAQNAAEKAIKQADEDIK 490
Cdd:COG1196 449 EEEAELEEEEEALLELLA 466
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
326-494 |
3.30e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 326 EVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEAVANEVlnmEMPST 405
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA---EEKKK 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 406 PQQLQALTEDIRERVESLSDVEVI------LQQSAGDIARAEMLLEEAKKASKgatdvkvtADMVKAALEEAEKAQNAAE 479
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAkkkadeAKKKAEEKKKADEAKKKAEEAKK--------ADEAKKKAEEAKKAEEAKK 1464
|
170
....*....|....*..
gi 698440606 480 KA--IKQADEDIKGTQD 494
Cdd:PTZ00121 1465 KAeeAKKADEAKKKAEE 1481
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
92-250 |
5.80e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 92 LEEKLSEIKTIIAQNpaAEPLKNIGNL----------FEEAEKLTADVTVKIADIE----------DNLSALAVKSNSTD 151
Cdd:TIGR04523 365 LEEKQNEIEKLKKEN--QSYKQEIKNLesqindleskIQNQEKLNQQKDEQIKKLQqekellekeiERLKETIIKNNSEI 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 152 TDL----SALETDAKSLDRVVKELAEQLEFIKIS--DVRGALDSITKYF------HMSLEAEVR-VNASTVYPDSAVELS 218
Cdd:TIGR04523 443 KDLtnqdSVKELIIKNLDNTRESLETQLKVLSRSinKIKQNLEQKQKELkskekeLKKLNEEKKeLEEKVKDLTKKISSL 522
|
170 180 190
....*....|....*....|....*....|..
gi 698440606 219 AQTRQEVEDLINEKEAQFKAKQEEQSRLLDEL 250
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
86-266 |
8.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.59 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 86 QQTLNTLEEKLSEIKTIIAQnpaaeplknIGNLFEEAEKLTADVTVKIADIEDNLSALAVKSNSTDTDLSALETDAKSLD 165
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAE---------LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 166 RVVKELAEQLEfikisDVRGAL-DSITKYFHMSLEAEVRVNASTVYPDSAV-------ELSAQTRQEVEDL------INE 231
Cdd:COG4942 90 KEIAELRAELE-----AQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVrrlqylkYLAPARREQAEELradlaeLAA 164
|
170 180 190
....*....|....*....|....*....|....*
gi 698440606 232 KEAQFKAKQEEQSRLLDELAGKLQSLDlSEVAEKT 266
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALE-ALKAERQ 198
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
1-51 |
1.11e-18 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 79.32 E-value: 1.11e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGFFPDcvPCHQC 51
Cdd:pfam00053 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSD--PPQGC 49
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
1-49 |
7.89e-18 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 77.01 E-value: 7.89e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGFFPDCVPCH 49
Cdd:cd00055 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
1-45 |
6.81e-17 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 74.27 E-value: 6.81e-17
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 698440606 1 CDCNPHGIQTPQCDRATGQCICNEGVEGPRCDRCSRGYSGF-FPDC 45
Cdd:smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDgPPGC 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
319-490 |
3.61e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 319 DILSALAEVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEAVANEVL 398
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 399 NMEMPSTPQQ------LQALTEDIRERVESLSDVEVILQQSAGDIARAEMLLEEAKKASKGATDVKVTADMVKAALEEAE 472
Cdd:COG1196 369 EAEAELAEAEeeleelAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
170
....*....|....*...
gi 698440606 473 KAQNAAEKAIKQADEDIK 490
Cdd:COG1196 449 EEEAELEEEEEALLELLA 466
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
326-494 |
3.30e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 326 EVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEAVANEVlnmEMPST 405
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA---EEKKK 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 406 PQQLQALTEDIRERVESLSDVEVI------LQQSAGDIARAEMLLEEAKKASKgatdvkvtADMVKAALEEAEKAQNAAE 479
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAkkkadeAKKKAEEKKKADEAKKKAEEAKK--------ADEAKKKAEEAKKAEEAKK 1464
|
170
....*....|....*..
gi 698440606 480 KA--IKQADEDIKGTQD 494
Cdd:PTZ00121 1465 KAeeAKKADEAKKKAEE 1481
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
309-501 |
3.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 309 AWQKAMDFDRdiLSALAEVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDflmqdsADLD 388
Cdd:COG4913 267 ARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG------NGGD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 389 sieavanevlnmempstpqQLQALTEDIRERVESLSDVEVILQQSAGDIARAEMLLEEAKKA-SKGATDVKVTADMVKAA 467
Cdd:COG4913 339 -------------------RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEfAALRAEAAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|....
gi 698440606 468 LEEAEKAQNAAEKAIKQADEDIKGTQDLLTSVSS 501
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
322-501 |
6.64e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 322 SALAEVEQLSRMVSEAKQRADEAKQNAQAVLL-----------------KTNATKEQVDRSNEDLRNLIKQIRDFLMQDS 384
Cdd:PRK02224 213 SELAELDEEIERYEEQREQARETRDEADEVLEeheerreeletleaeieDLRETIAETEREREELAEEVRDLRERLEELE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 385 ADLDSIEAVAnEVLNMEMPSTPQQLQALTEDIRERVESLSDVEVILQQSAGDI-----------ARAEMLLEEAKKASKG 453
Cdd:PRK02224 293 EERDDLLAEA-GLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAeslredaddleERAEELREEAAELESE 371
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 698440606 454 ATDVKVTADMVKAALEEAEKAQNAAEKAIKQADEDIKGTQDLLTSVSS 501
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE 419
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
324-498 |
1.22e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 324 LAEVEQLSRMVSEAKQRADEAKQNAQAvLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEavanevLNMEMP 403
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA------LEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 404 STPQQLQALtediRERVESLSDVEVILQQSAGDIARAEMLLEEAKKASKGAT-----DVKVTADMVKAALEEAEKAQNAA 478
Cdd:COG4717 143 ELPERLEEL----EERLEELRELEEELEELEAELAELQEELEELLEQLSLATeeelqDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|
gi 698440606 479 EKAIKQADEDIKGTQDLLTS 498
Cdd:COG4717 219 QEELEELEEELEQLENELEA 238
|
|
| EGF_2 |
pfam07974 |
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins. |
2-31 |
2.57e-03 |
|
EGF-like domain; This family contains EGF domains found in a variety of extracellular proteins.
Pssm-ID: 400365 Cd Length: 26 Bit Score: 35.40 E-value: 2.57e-03
10 20 30
....*....|....*....|....*....|
gi 698440606 2 DCNPHGIqtpqCDRATGQCICNEGVEGPRC 31
Cdd:pfam07974 1 ICSGRGT----CVNQCGKCVCDSGYQGATC 26
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
319-487 |
2.69e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 319 DILSALAEVEQLSRMVSEAKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLmqdsadldsiEAVANevl 398
Cdd:PRK02224 336 AAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELR----------ERFGD--- 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 399 nmeMPSTPQQLQALTEDIRER----VESLSDVEVILQQSAGDIARAEMLLEEAK-----KASKGATDVKVTAD------M 463
Cdd:PRK02224 403 ---APVDLGNAEDFLEELREErdelREREAELEATLRTARERVEEAEALLEAGKcpecgQPVEGSPHVETIEEdrerveE 479
|
170 180
....*....|....*....|....
gi 698440606 464 VKAALEEAEKAQNAAEKAIKQADE 487
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAED 503
|
|
| PRK12472 |
PRK12472 |
hypothetical protein; Provisional |
438-486 |
5.41e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 39.47 E-value: 5.41e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 698440606 438 ARAEMLLEEAKKASKGATDVKVTADM-------VKAALEEAEKAQNAAEKAIKQAD 486
Cdd:PRK12472 190 ARAETLAREAEDAARAADEAKTAAAAaareaapLKASLRKLERAKARADAELKRAD 245
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
92-250 |
5.80e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 92 LEEKLSEIKTIIAQNpaAEPLKNIGNL----------FEEAEKLTADVTVKIADIE----------DNLSALAVKSNSTD 151
Cdd:TIGR04523 365 LEEKQNEIEKLKKEN--QSYKQEIKNLesqindleskIQNQEKLNQQKDEQIKKLQqekellekeiERLKETIIKNNSEI 442
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 152 TDL----SALETDAKSLDRVVKELAEQLEFIKIS--DVRGALDSITKYF------HMSLEAEVR-VNASTVYPDSAVELS 218
Cdd:TIGR04523 443 KDLtnqdSVKELIIKNLDNTRESLETQLKVLSRSinKIKQNLEQKQKELkskekeLKKLNEEKKeLEEKVKDLTKKISSL 522
|
170 180 190
....*....|....*....|....*....|..
gi 698440606 219 AQTRQEVEDLINEKEAQFKAKQEEQSRLLDEL 250
Cdd:TIGR04523 523 KEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
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|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
337-494 |
6.06e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.53 E-value: 6.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 337 AKQRADEAKQNAQAVLLKTNATKEQVDRSNEDLRNLIKQIRDFLMQDSADLDSIEAVANEVLnmempstpQQLQALTEDI 416
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL--------AELARLEQDI 304
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 698440606 417 RERVESLSDVEVILQQSAGDIARAEMLLEEAKKASKGATDVKVTADMVKAALEEAEKAQNAAEKAIKQADEDIKGTQD 494
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
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|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
86-266 |
8.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.59 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 86 QQTLNTLEEKLSEIKTIIAQnpaaeplknIGNLFEEAEKLTADVTVKIADIEDNLSALAVKSNSTDTDLSALETDAKSLD 165
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAE---------LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698440606 166 RVVKELAEQLEfikisDVRGAL-DSITKYFHMSLEAEVRVNASTVYPDSAV-------ELSAQTRQEVEDL------INE 231
Cdd:COG4942 90 KEIAELRAELE-----AQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVrrlqylkYLAPARREQAEELradlaeLAA 164
|
170 180 190
....*....|....*....|....*....|....*
gi 698440606 232 KEAQFKAKQEEQSRLLDELAGKLQSLDlSEVAEKT 266
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALE-ALKAERQ 198
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