NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|767934535|ref|XP_011512382|]
View 

large ribosomal subunit protein bL36m isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
81-118 4.84e-17

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 68.69  E-value: 4.84e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767934535   81 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 118
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
81-118 4.84e-17

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 68.69  E-value: 4.84e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767934535   81 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 118
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 82-117 1.06e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.44  E-value: 1.06e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 767934535  82 KNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 117
Cdd:COG0257    2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 87-117 4.04e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 48.45  E-value: 4.04e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 767934535  87 LKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 117
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
81-118 4.84e-17

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 68.69  E-value: 4.84e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767934535   81 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 118
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 82-117 1.06e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.44  E-value: 1.06e-12
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 767934535  82 KNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 117
Cdd:COG0257    2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 87-117 4.04e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 48.45  E-value: 4.04e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 767934535  87 LKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 117
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 82-117 3.73e-07

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 43.40  E-value: 3.73e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 767934535  82 KNKTVLKKRCKDCYLVKRRGRWYVYCKThPRHKQRQ 117
Cdd:PRK00465   2 KVRASVKKICEKCKVIKRKGVVRVICEN-PKHKQRQ 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH