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Conserved domains on  [gi|1002251764|ref|XP_015630117|]
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uncharacterized protein [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1110 super family cl05844
Protein of unknown function (DUF1110); This family consists of hypothetical proteins specific ...
 42-144 4.54e-13

Protein of unknown function (DUF1110); This family consists of hypothetical proteins specific to Oryza sativa. One sequence appears to be tandemly repeated.


The actual alignment was detected with superfamily member pfam06533:

Pssm-ID: 399500  Cd Length: 189  Bit Score: 62.96  E-value: 4.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002251764  42 SAATASTLLSVRLLRVNYLAEQSAAIKLSYAESDARKAYALVDGCRGHLDAALLLLDHvGRLPDVQGMINAERLAAVADL 121
Cdd:pfam06533  88 SVDPSTPLGDIGHLGDQYLAERNALFKLREAKEDAEEAYAAVDRCRGHLDAILLLLDH-PRLPGVDDLIEEERAAAVGDL 166

                          90       100
                  ....*....|....*....|...
gi 1002251764 122 EAAIVAVQRSAEMATAARQDVSG 144
Cdd:pfam06533 167 QAAIGNAELGTELAVDARQDVSG 189
 
Name Accession Description Interval E-value
DUF1110 pfam06533
Protein of unknown function (DUF1110); This family consists of hypothetical proteins specific ...
 42-144 4.54e-13

Protein of unknown function (DUF1110); This family consists of hypothetical proteins specific to Oryza sativa. One sequence appears to be tandemly repeated.


Pssm-ID: 399500  Cd Length: 189  Bit Score: 62.96  E-value: 4.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002251764  42 SAATASTLLSVRLLRVNYLAEQSAAIKLSYAESDARKAYALVDGCRGHLDAALLLLDHvGRLPDVQGMINAERLAAVADL 121
Cdd:pfam06533  88 SVDPSTPLGDIGHLGDQYLAERNALFKLREAKEDAEEAYAAVDRCRGHLDAILLLLDH-PRLPGVDDLIEEERAAAVGDL 166

                          90       100
                  ....*....|....*....|...
gi 1002251764 122 EAAIVAVQRSAEMATAARQDVSG 144
Cdd:pfam06533 167 QAAIGNAELGTELAVDARQDVSG 189
 
Name Accession Description Interval E-value
DUF1110 pfam06533
Protein of unknown function (DUF1110); This family consists of hypothetical proteins specific ...
 42-144 4.54e-13

Protein of unknown function (DUF1110); This family consists of hypothetical proteins specific to Oryza sativa. One sequence appears to be tandemly repeated.


Pssm-ID: 399500  Cd Length: 189  Bit Score: 62.96  E-value: 4.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002251764  42 SAATASTLLSVRLLRVNYLAEQSAAIKLSYAESDARKAYALVDGCRGHLDAALLLLDHvGRLPDVQGMINAERLAAVADL 121
Cdd:pfam06533  88 SVDPSTPLGDIGHLGDQYLAERNALFKLREAKEDAEEAYAAVDRCRGHLDAILLLLDH-PRLPGVDDLIEEERAAAVGDL 166

                          90       100
                  ....*....|....*....|...
gi 1002251764 122 EAAIVAVQRSAEMATAARQDVSG 144
Cdd:pfam06533 167 QAAIGNAELGTELAVDARQDVSG 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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