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Conserved domains on  [gi|1002287437|ref|XP_015648018|]
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dehydrodolichyl diphosphate synthase 6 isoform X2 [Oryza sativa Japonica Group]

Protein Classification

undecaprenyl diphosphate synthase family protein( domain architecture ID 10087541)

undecaprenyl diphosphate synthase (UPPS) family protein catalyzes consecutive condensation reactions of farnesyl diphosphate (FPP) with specific numbers of isopentenyl diphosphate (IPP) to form long-chain polyprenyl diphosphates, similar to UPPS that catalyzes chain elongation of FPP by eight IPP to form the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 51-283 1.98e-97

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


:

Pssm-ID: 259850  Cd Length: 219  Bit Score: 285.81  E-value: 1.98e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  51 HIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLEN 130
Cdd:cd00475     1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 131 rnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDILQREDvdsvan 210
Cdd:cd00475    81 ---LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPE------ 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002287437 211 ngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:cd00475   152 -----DITEELISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
 
Name Accession Description Interval E-value
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 51-283 1.98e-97

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 285.81  E-value: 1.98e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  51 HIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLEN 130
Cdd:cd00475     1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 131 rnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDILQREDvdsvan 210
Cdd:cd00475    81 ---LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPE------ 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002287437 211 ngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:cd00475   152 -----DITEELISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 55-283 5.59e-91

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 269.23  E-value: 5.59e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  55 IMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEE-----KINELLE 129
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEeylrrELPELHK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 130 NrnvinkvNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDIlqreDVDsva 209
Cdd:pfam01255  81 N-------GVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGKKL----DPE--- 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002287437 210 nngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:pfam01255 147 ------DIDEELISSHLYTAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQR 214
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
46-283 1.32e-74

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 228.79  E-value: 1.32e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  46 GPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKIN 125
Cdd:COG0020    13 GNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYLR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 126 ELLENrnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAErrdilqredv 205
Cdd:COG0020    93 RELDE---LHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARD---------- 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002287437 206 dsVANNGVH-SDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:COG0020   160 --VAAGELDpEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQR 236
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 50-285 1.57e-65

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 204.94  E-value: 1.57e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  50 KHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKI-NELL 128
Cdd:TIGR00055   1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLdREVK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 129 EnrnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAE-RRDILQREDVDs 207
Cdd:TIGR00055  81 E----LHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKvKSGKLLPEDID- 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002287437 208 vanNGVhsdisvadLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVH 285
Cdd:TIGR00055 156 ---EET--------LNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRH 222
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 46-285 1.25e-63

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 200.87  E-value: 1.25e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  46 GPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKIN 125
Cdd:PRK14830   20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 126 ----ELLENrnvinkvNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAErrdilq 201
Cdd:PRK14830  100 kfvpELIEN-------NVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKD------ 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 202 redvdsVANNGVHS-DISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQ 280
Cdd:PRK14830  167 ------VLDGKLNPeDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKD 240


                  ....*
gi 1002287437 281 YQRVH 285
Cdd:PRK14830  241 YQSRQ 245
 
Name Accession Description Interval E-value
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 51-283 1.98e-97

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 285.81  E-value: 1.98e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  51 HIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLEN 130
Cdd:cd00475     1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKELEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 131 rnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDILQREDvdsvan 210
Cdd:cd00475    81 ---LHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPE------ 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002287437 211 ngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:cd00475   152 -----DITEELISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQR 219
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 55-283 5.59e-91

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 269.23  E-value: 5.59e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  55 IMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEE-----KINELLE 129
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEeylrrELPELHK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 130 NrnvinkvNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDIlqreDVDsva 209
Cdd:pfam01255  81 N-------GVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIVKEGKKL----DPE--- 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002287437 210 nngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:pfam01255 147 ------DIDEELISSHLYTAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQR 214
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
46-283 1.32e-74

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 228.79  E-value: 1.32e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  46 GPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKIN 125
Cdd:COG0020    13 GNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSFLMGLLREYLR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 126 ELLENrnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAErrdilqredv 205
Cdd:COG0020    93 RELDE---LHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARD---------- 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002287437 206 dsVANNGVH-SDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:COG0020   160 --VAAGELDpEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQR 236
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 50-285 1.57e-65

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 204.94  E-value: 1.57e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  50 KHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKI-NELL 128
Cdd:TIGR00055   1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLdREVK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 129 EnrnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAE-RRDILQREDVDs 207
Cdd:TIGR00055  81 E----LHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKvKSGKLLPEDID- 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002287437 208 vanNGVhsdisvadLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVH 285
Cdd:TIGR00055 156 ---EET--------LNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRH 222
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 46-285 1.25e-63

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 200.87  E-value: 1.25e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  46 GPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKIN 125
Cdd:PRK14830   20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 126 ----ELLENrnvinkvNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAErrdilq 201
Cdd:PRK14830  100 kfvpELIEN-------NVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKD------ 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 202 redvdsVANNGVHS-DISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQ 280
Cdd:PRK14830  167 ------VLDGKLNPeDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKD 240


                  ....*
gi 1002287437 281 YQRVH 285
Cdd:PRK14830  241 YQSRQ 245
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 48-285 1.94e-56

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 182.45  E-value: 1.94e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKI-NE 126
Cdd:PRK14831   20 LPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLrRE 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 127 LLEnrnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVcAERrdiLQREDVD 206
Cdd:PRK14831  100 LEE----LMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAI-AQQ---VQQGELD 171

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002287437 207 SvanngvhSDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVH 285
Cdd:PRK14831  172 P-------SEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRE 243
PRK14836 PRK14836
undecaprenyl pyrophosphate synthase; Provisional
 39-270 1.25e-51

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237831  Cd Length: 253  Bit Score: 170.25  E-value: 1.25e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  39 IVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLME 118
Cdd:PRK14836    5 IQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALME 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 119 L----MEEKINELLENrnvinkvNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCA 194
Cdd:PRK14836   85 LflkaLDREVDKLHRN-------GIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAR 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002287437 195 ERRDILQREDvdsvanngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFS 270
Cdd:PRK14836  158 EVAAGKLAPD-----------EIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFD 222
PRK14832 PRK14832
undecaprenyl pyrophosphate synthase; Provisional
 31-283 2.68e-51

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237827  Cd Length: 253  Bit Score: 169.41  E-value: 2.68e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  31 LQNFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDL 110
Cdd:PRK14832    1 MNNFDYVMRPPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 111 TEVKSLMELMEEKINELLENrnvINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIViavn 190
Cdd:PRK14832   81 EEVDFLMLLFERLLRRELAQ---MHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEIT---- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 191 KVCaerRDILQREDVDSVANNGVHSDIsvadLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFS 270
Cdd:PRK14832  154 RAC---RQVAELVQQGKLSADAVNEQL----VEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFD 226

                         250
                  ....*....|...
gi 1002287437 271 FKHLVWAILQYQR 283
Cdd:PRK14832  227 RAAFHQALLSYQK 239
PRK14835 PRK14835
isoprenyl transferase;
46-282 9.03e-51

isoprenyl transferase;


Pssm-ID: 237830  Cd Length: 275  Bit Score: 168.87  E-value: 9.03e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  46 GPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKIN 125
Cdd:PRK14835   39 GKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREAR 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 126 ELLEN-RNVINKVncKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDilQRED 204
Cdd:PRK14835  119 RMAVDpRIHANRV--RVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAA--TGKS 194

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1002287437 205 VDSVANNGVHSDISvadldHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQ 282
Cdd:PRK14835  195 PEEVAAELTPEHIS-----AHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQ 267
PRK14828 PRK14828
undecaprenyl pyrophosphate synthase; Provisional
 31-269 1.49e-48

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237825  Cd Length: 256  Bit Score: 162.22  E-value: 1.49e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  31 LQNFIRKCIVAV--------LSYGPMPKHIAFIMDGNRRYAKFRSIQEGS-GHRMGFSALIASLLYCYEMGVKYITVYAF 101
Cdd:PRK14828    1 MRLNLRRLLYKVyarrllgeLDGAQVPGHVGIIVDGNRRWARKAGFTDVSqGHRAGAAKIGEFLGWCDETDVNVVTLYLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 102 SIDNFKRDLTEVKSLMELMEEKINELLENRNvinkvnCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNS 181
Cdd:PRK14828   81 STDNLGRPSEELNPLLDIIEDVVRQLAPDGR------WRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 182 TSEIVIAVNKVCAERRDilQREDVDSVANNgvhsdISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQN 261
Cdd:PRK14828  155 RQEIVDAVRSLLTEHKD--KGTSIDELAES-----VTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYF 227


                  ....*...
gi 1002287437 262 PDPLWPEF 269
Cdd:PRK14828  228 CETYWPAF 235
PRK14834 PRK14834
isoprenyl transferase;
49-283 1.19e-47

isoprenyl transferase;


Pssm-ID: 237829  Cd Length: 249  Bit Score: 159.92  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  49 PKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKI-NEL 127
Cdd:PRK14834   15 PRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIrRDL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 128 LEnrnvINKVNCKINFWGKLDMLSEPVR---VAAEKLmvsTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRDILQRED 204
Cdd:PRK14834   95 AE----LHRNGVRVRVIGERAGLEADICallNEAEEL---TRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPA 167

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002287437 205 vdsvanngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:PRK14834  168 -----------SIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYAR 235
PRK14842 PRK14842
undecaprenyl pyrophosphate synthase; Provisional
 48-282 2.63e-43

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173303  Cd Length: 241  Bit Score: 148.21  E-value: 2.63e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINEL 127
Cdd:PRK14842    8 IPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 128 LEnrnVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAERRdilqREDVds 207
Cdd:PRK14842   88 LD---TIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARK----AKKV-- 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002287437 208 vannGVHSDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQ 282
Cdd:PRK14842  159 ----TLEKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYE 229
PRK14833 PRK14833
di-trans,poly-cis-decaprenylcistransferase;
48-283 2.59e-42

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237828  Cd Length: 233  Bit Score: 145.34  E-value: 2.59e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKI-NE 126
Cdd:PRK14833    4 TLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLkDE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 127 L---LENrnvinkvNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVcaerrdilqre 203
Cdd:PRK14833   84 RstyLEN-------NIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKL----------- 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 204 dVDSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:PRK14833  146 -LESPPSHIGELESLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYK 224
PRK14840 PRK14840
undecaprenyl pyrophosphate synthase; Provisional
 41-282 1.37e-41

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173301  Cd Length: 250  Bit Score: 144.22  E-value: 1.37e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  41 AVLSYGPMPKHIAFIMDGNRRYAK----FRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSL 116
Cdd:PRK14840   11 NFPSLQSLPRHVAIIMDGNRRWYRkheqFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAEL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 117 MEL----MEEKINELLENRnvinkvnCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKV 192
Cdd:PRK14840   91 FSLfnsqLDSQLPYLHENE-------IRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 193 caeRRDIL-QREDVDSVANNGVHSdisvadldhHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSF 271
Cdd:PRK14840  164 ---HQDLAnKKISSDDISEELISS---------YLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTP 231

                         250
                  ....*....|.
gi 1002287437 272 KHLVWAILQYQ 282
Cdd:PRK14840  232 NDLLEAIKTYQ 242
PRK14841 PRK14841
undecaprenyl pyrophosphate synthase; Provisional
 48-283 5.95e-41

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173302  Cd Length: 233  Bit Score: 142.05  E-value: 5.95e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINEL 127
Cdd:PRK14841    3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDRE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 128 LEnrnVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCaerRDILQREDVds 207
Cdd:PRK14841   83 ME---LLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESIL---KDVSQGKKI-- 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002287437 208 vanngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:PRK14841  155 --------ELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSK 222
PRK14829 PRK14829
undecaprenyl pyrophosphate synthase; Provisional
 48-283 1.60e-40

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237826  Cd Length: 243  Bit Score: 141.07  E-value: 1.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELmeekinel 127
Cdd:PRK14829   14 LPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGF-------- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 128 leNRNVINKVNCKINFWGkldmlsepVRV------------------AAEKLmvsTAENKGLVFSVCMPYNSTSEIVIAV 189
Cdd:PRK14829   86 --SRDVIHRRREQMDEWG--------VRVrwsgrrprlwksvideleAAEEL---TKNNTTMDLVFCVNYGGRAEIADAA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 190 NKVCAERRDILQREDvdsvanngvhsDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEF 269
Cdd:PRK14829  153 AAIAREVRDGKISGD-----------RVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDF 221

                         250
                  ....*....|....
gi 1002287437 270 SFKHLVWAILQYQR 283
Cdd:PRK14829  222 GRDDLWAAIDEYAH 235
PRK14838 PRK14838
isoprenyl transferase;
48-283 3.74e-40

isoprenyl transferase;


Pssm-ID: 184846  Cd Length: 242  Bit Score: 140.01  E-value: 3.74e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINEl 127
Cdd:PRK14838   10 IPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEE- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 128 lenrNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAE-RRDILQREDVD 206
Cdd:PRK14838   89 ----ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLvQNGELNPEEIT 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1002287437 207 SVAnngvhsdisvadLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:PRK14838  165 EES------------ISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQK 229
PRK14827 PRK14827
undecaprenyl pyrophosphate synthase; Provisional
 48-277 3.75e-38

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173288  Cd Length: 296  Bit Score: 136.62  E-value: 3.75e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  48 MPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINel 127
Cdd:PRK14827   67 LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVR-- 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 128 lENRNVINKVNCKINFWGkldmlSEPV--RVAAEKLMVS---TAENKGLVFSVCMPYNSTSEIVIAVnkvcaerRDIlQR 202
Cdd:PRK14827  145 -RRRDNLNKMGVRIRWVG-----SRPRlwRSVINELAIAeemTKSNDVITINYCVNYGGRTEITEAT-------REI-AR 210

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1002287437 203 EDVDSVANNgvhSDISVADLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLvWA 277
Cdd:PRK14827  211 EAAAGRLNP---ERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDL-WA 281
PRK14839 PRK14839
di-trans,poly-cis-decaprenylcistransferase;
51-283 2.14e-30

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237832  Cd Length: 239  Bit Score: 114.47  E-value: 2.14e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  51 HIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKI-NELle 129
Cdd:PRK14839   12 HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLrNET-- 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 130 NRNVINKVncKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAvnkvCAERRDI--LQREDVDS 207
Cdd:PRK14839   90 ERLARNGV--RLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAA----AAKALGPegLSREAFSD 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002287437 208 vanngvhsdisvadldhhMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQR 283
Cdd:PRK14839  164 ------------------LLTGDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHG 221
PRK14837 PRK14837
undecaprenyl pyrophosphate synthase; Provisional
 43-273 2.70e-30

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173298  Cd Length: 230  Bit Score: 114.15  E-value: 2.70e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  43 LSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEe 122
Cdd:PRK14837    1 MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIA- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 123 kiNELLENRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVcaerrdilqr 202
Cdd:PRK14837   80 --DYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKF---------- 147

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1002287437 203 edvdsvanngVHSDISVADLDHHMYSA-----GCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKH 273
Cdd:PRK14837  148 ----------LSSGLDLETLNENVFSKfldnpELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNH 213
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
56-269 9.77e-26

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 101.98  E-value: 9.77e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  56 MDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELMEEKINELLENrnvIN 135
Cdd:PRK10240    1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKS---LH 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 136 KVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAVNKVCAE-RRDILQREDVDSVANNgvh 214
Cdd:PRK10240   78 RHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQvQQGNLQPDQIDEEMLN--- 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1002287437 215 SDISVADLdhhmysagcPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPLWPEF 269
Cdd:PRK10240  155 QHICMHEL---------APVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDF 200
PTZ00349 PTZ00349
dehydrodolichyl diphosphate synthetase; Provisional
 33-281 5.60e-25

dehydrodolichyl diphosphate synthetase; Provisional


Pssm-ID: 185571  Cd Length: 322  Bit Score: 102.00  E-value: 5.60e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437  33 NFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTE 112
Cdd:PTZ00349    4 NIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 113 VKSLMEL-MEEKINELLeNRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYNSTSEIVIAV-- 189
Cdd:PTZ00349   84 IHFLFYLnLLILINEDF-FFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKfn 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002287437 190 ---------------NKVCA-------------------------------ERRDILQREDVDSVANNGV---HSDISVA 220
Cdd:PTZ00349  163 pnlyfdtyknlleekKILCGsniltdpikegtfaipddedecdyldhelenERIDLDLKFDGDCICGEKSflnEEQIEIV 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002287437 221 DLDHHMYSAGCPDPDIVIRTSGETRLSNFLLWQTT-FSHLQNPDPLWPEFSFKHLVWAILQY 281
Cdd:PTZ00349  243 NYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISeFTEIYFINEYWPIFNFLQFIYIILHY 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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