|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
130-201 |
8.52e-38 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 134.96 E-value: 8.52e-38
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034578221 130 GNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYT 201
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYG 72
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
371-610 |
4.29e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 113.56 E-value: 4.29e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 371 IKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYL 448
Cdd:COG0457 1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 449 NTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfapQSL 528
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 529 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEA 608
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
|
..
gi 1034578221 609 RL 610
Cdd:COG0457 227 LA 228
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
394-690 |
1.31e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.90 E-value: 1.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 394 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 473
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 474 PDENLkdphahkssvtSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 553
Cdd:COG2956 106 DPDDA-----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH---AYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 554 RSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfn 633
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP----------------------- 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034578221 634 aahmlrqaslnEAAEKYYDLAARLRPNyPAALMNLGAILHLNGRLQKAEANYLRALQ 690
Cdd:COG2956 229 -----------EEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
443-695 |
5.77e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.89 E-value: 5.77e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 443 LASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKdphAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 522
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AH--------LALGNLYRRRGEYDRAIRIHQKLLERDPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 523 FApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQ 602
Cdd:COG2956 76 AE---ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 603 FLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAE 682
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEAL 232
|
250
....*....|...
gi 1034578221 683 ANYLRALQLKPDD 695
Cdd:COG2956 233 ELLRKALELDPSD 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
337-591 |
6.23e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.89 E-value: 6.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 337 LIFYATATLIVFYGLKtAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLY 414
Cdd:COG2956 2 LLPVAAALGWYFKGLN-YLLNGQPDKAIDLLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 415 NLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAHkssvtsclYN 494
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---AHAY--------CE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 495 LGKLYHEQGHYEEALSVYKEAIQKMPRQFAPqslYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 574
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARA---LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250
....*....|....*..
gi 1034578221 575 RKSEAEKLFLKAIELDP 591
Cdd:COG2956 227 DPEEALELLRKALELDP 243
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
441-690 |
6.61e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 107.01 E-value: 6.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 441 PTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMP 520
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 521 RQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHY 600
Cdd:COG0457 74 DDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 601 GQFLL-----EEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLN 675
Cdd:COG0457 151 GIALEklgryEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
250
....*....|....*
gi 1034578221 676 GRLQKAEANYLRALQ 690
Cdd:COG0457 231 LALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
356-590 |
1.40e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.12 E-value: 1.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 433
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 434 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYK 513
Cdd:COG2956 134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPDCARA-----LLLLAELYLEQGDYEEAIAALE 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034578221 514 EAIQKMPRQFapqSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDhIPAHLTYGKLLALTGRKSEAEKLFLKAIELD 590
Cdd:COG2956 203 RALEQDPDYL---PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
356-590 |
4.14e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 4.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 433
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 434 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYK 513
Cdd:COG0457 100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADAL--------YNLGIALEKLGRYEEALELLE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034578221 514 EAiqkmpRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELD 590
Cdd:COG0457 169 KL-----EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
491-695 |
4.35e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 4.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 491 CLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLL 570
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--AEALYNL-GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 571 ALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKY 650
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY----------------------------------DEAIEA 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1034578221 651 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
394-678 |
1.67e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 102.76 E-value: 1.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 394 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 473
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 474 pdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 553
Cdd:COG3914 108 ------NPDNAEA-----LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRAL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 554 RSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFN 633
Cdd:COG3914 174 ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1034578221 634 AAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRL 678
Cdd:COG3914 254 ALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDPDRKL 298
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
493-705 |
2.57e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.49 E-value: 2.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 493 YNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLAL 572
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 573 TGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYD 652
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1034578221 653 LAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKL 705
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
356-479 |
2.72e-22 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 101.99 E-value: 2.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 433
Cdd:COG3914 90 ALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1034578221 434 KLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLK 479
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
382-529 |
2.43e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.91 E-value: 2.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 382 LGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTE 461
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034578221 462 EARRTFLKCSEI-PDenlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLY 529
Cdd:COG3914 164 EAIAALRRALELdPD----NAEAL--------NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
355-554 |
1.76e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 92.10 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 355 IRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHY 432
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 433 YKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAhkssvTSCLYNLGKLYHEQGHYEEALSVY 512
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ------DPDY-----LPALPRLAELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1034578221 513 KEAIQKMPRqfapQSLYNMMGEAYMRLSKLPEAEHWYMESLR 554
Cdd:COG2956 236 RKALELDPS----DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
529-702 |
6.28e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 89.68 E-value: 6.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 529 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEA 608
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 609 RLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRA 688
Cdd:COG0457 91 RY----------------------------------EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERA 136
|
170
....*....|....
gi 1034578221 689 LQLKPDDVITQSNL 702
Cdd:COG0457 137 LELDPDDADALYNL 150
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
476-702 |
1.16e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.52 E-value: 1.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 476 ENLKDPHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRS 555
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 556 KTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaa 635
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL------------------------- 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034578221 636 hmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG3914 163 ---------EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
444-591 |
2.10e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.86 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 444 ASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAhkssvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQF 523
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDN---PEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034578221 524 ApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDP 591
Cdd:COG4783 73 E---ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
524-695 |
2.72e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.08 E-value: 2.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 524 APQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTkgncymhygqf 603
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 604 lleearlieaaemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEA 683
Cdd:COG4783 71 -----------------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
170
....*....|..
gi 1034578221 684 NYLRALQLKPDD 695
Cdd:COG4783 128 ALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
407-559 |
3.60e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.70 E-value: 3.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 407 SNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI-PDEnlkdPHAHk 485
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELdPDE----PEAR- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034578221 486 ssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLRSKTDH 559
Cdd:COG4783 76 -------LNLGLALLKAGDYDEALALLEKALKLDPEH--PEAYLR-LARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
376-522 |
1.11e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.46 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 376 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILM 455
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034578221 456 NQGRTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 522
Cdd:COG4783 84 KAGDYDEALALLEKALKL---DPEHPEAY--------LRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-610 |
1.58e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 492 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 571
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110
....*....|....*....|....*....|....*....
gi 1034578221 572 LTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARL 610
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
375-704 |
1.28e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.82 E-value: 1.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 375 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIIL 454
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 455 MNQGRTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLYHEQGHYEEALSVYKEAIQKmprqfAPQSLYNM-MG 533
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 534 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPtkgncymhygqflleearliea 613
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------------------- 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 614 aemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 693
Cdd:TIGR02917 802 -------------DNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
|
330
....*....|.
gi 1034578221 694 DDVITQSNLRK 704
Cdd:TIGR02917 869 EAAAIRYHLAL 879
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
394-535 |
2.41e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.42 E-value: 2.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 394 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 473
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034578221 474 pdenlkDPHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEA 535
Cdd:COG4235 81 ------DPDNPEA-----LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
376-517 |
4.39e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.26 E-value: 4.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 376 AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILM 455
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034578221 456 NQGRTEEARRTFLKCSEIPDEN------------LKDPHAHKSSVTSclyNLGKLYHEQGHYEEALSVYKEAIQ 517
Cdd:COG4785 153 YLGRYELAIADLEKALELDPNDperalwlylaerKLDPEKALALLLE---DWATAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
353-465 |
5.35e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 5.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 353 TAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 430
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
90 100 110
....*....|....*....|....*....|....*
gi 1034578221 431 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARR 465
Cdd:COG3914 201 AAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
498-591 |
1.52e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.83 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 498 LYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKS 577
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|....
gi 1034578221 578 EAEKLFLKAIELDP 591
Cdd:COG5010 140 EAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
352-477 |
1.57e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.29 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 352 KTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEA 429
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1034578221 430 LHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDEN 477
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
416-707 |
1.14e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 416 LGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENlkdPHAHKSSVTSclynl 495
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADLLLILS----- 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 496 gklYHEQGHYEEALSVYKEAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTD----------------- 558
Cdd:TIGR02917 441 ---YLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaanlaridiqegn 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 559 -----------------HIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAA 621
Cdd:TIGR02917 515 pddaiqrfekvltidpkNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 622 EL--DSTEFDVVFNAAHmLRQASLNEAAEKYYDLAARLrPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQ 699
Cdd:TIGR02917 595 DAapDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672
|
....*...
gi 1034578221 700 SNLRKLWN 707
Cdd:TIGR02917 673 IGLAQLLL 680
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
375-705 |
4.16e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.73 E-value: 4.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 375 PAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIIL 454
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 455 MNQGRTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLyNMMGE 534
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYL-----------PALLLAGASEYQLGNLEQAYQYLNQILKYAPNS--HQAR-RLLAS 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 535 AYMRLSKlpeaehwYMESLRSKTDHIPAHLTYGKLLALTGRK-------SEAEKLFLKAIELDPTKGNCYMHYGQFLLEE 607
Cdd:TIGR02917 338 IQLRLGR-------VDEAIATLSPALGLDPDDPAALSLLGEAylalgdfEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 608 ARLIEAAEMAKKAAELDSTEFDV-VFNAAHMLRQASLNEAAEkyydLAARLRPNYP--AALMNL-GAILHLNGRLQKAEA 683
Cdd:TIGR02917 411 GDPSEAIADLETAAQLDPELGRAdLLLILSYLRSGQFDKALA----AAKKLEKKQPdnASLHNLlGAIYLGKGDLAKARE 486
|
330 340
....*....|....*....|..
gi 1034578221 684 NYLRALQLKPDDVITQSNLRKL 705
Cdd:TIGR02917 487 AFEKALSIEPDFFPAAANLARI 508
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
340-469 |
4.61e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.60 E-value: 4.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 340 YATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLL 419
Cdd:COG5010 18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1034578221 420 LQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLK 469
Cdd:COG5010 98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
367-477 |
5.56e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.49 E-value: 5.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 367 YRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLA 444
Cdd:COG4235 6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|...
gi 1034578221 445 SAYLNTGIILMNQGRTEEARRTFLKCSEIPDEN 477
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
498-591 |
6.62e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.11 E-value: 6.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 498 LYHEQGHYEEALSVYKEAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHwYMESLRSKTDHIPAHLTYGKLLALTGRKS 577
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....
gi 1034578221 578 EAEKLFLKAIELDP 591
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
394-522 |
1.13e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.44 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 394 EAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 473
Cdd:COG5010 38 KEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1034578221 474 PDENlkdPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQ 522
Cdd:COG5010 118 SPDN---PNAY--------SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
544-695 |
1.17e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 544 EAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGncymhygqflleearlieaaemakkaael 623
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA----------------------------- 51
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034578221 624 dstefDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:COG4235 52 -----DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
419-521 |
2.40e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.57 E-value: 2.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 419 LLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRtFLKCSEIpdeNLKDPHAhkssvtscLYNLGKL 498
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEA--------LLNLAEL 68
|
90 100
....*....|....*....|...
gi 1034578221 499 YHEQGHYEEALSVYKEAIQKMPR 521
Cdd:COG3063 69 LLELGDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
597-702 |
6.18e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 6.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 597 YMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQaslNEAAEKYYDLAARLRPNYPAALMNLGAILHLNG 676
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD---FEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100
....*....|....*....|....*.
gi 1034578221 677 RLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNL 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
395-555 |
6.87e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 6.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 395 AESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIp 474
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 475 deNLKDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLR 554
Cdd:COG5010 84 --DPNNPELY--------YNLALLYSRSGDKDEAKEYYEKALALSPDN--PNAYSN-LAALLLSLGQDDEAKAALQRALG 150
|
.
gi 1034578221 555 S 555
Cdd:COG5010 151 T 151
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
385-479 |
7.00e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 7.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 385 VLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKlAIGSRPTLASAYLNTGIILMNQGRTEEAR 464
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 1034578221 465 RTFLKCSEIPDENLK 479
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
353-718 |
1.10e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.10 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 353 TAIRNGDWQNEEMLYRSGIKVNPAKA--WGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 430
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNAslHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 431 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEipdenlKDPHAHKSSVtsclyNLGKLYHEQGHYEEALS 510
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE------LNPQEIEPAL-----ALAQYYLGKGQLKKALA 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 511 VYKEAIQKMPRqfaPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELD 590
Cdd:TIGR02917 589 ILNEAADAAPD---SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 591 PTKGNCYMHYGQFLLEEARL---IEAAEMAKKAAELDSTEFDVVFNAAhmLRQASLnEAAEKYYDLAARLRPNyPAALMN 667
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLAAKRTesaKKIAKSLQKQHPKAALGFELEGDLY--LRQKDY-PAAIQAYRKALKRAPS-SQNAIK 741
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1034578221 668 LGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWnIMEKQGLKTSK 718
Cdd:TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIK 791
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
395-588 |
4.71e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 60.31 E-value: 4.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 395 AESAYRNALYYRsNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI- 473
Cdd:COG4785 59 AAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELd 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 474 PDenlkDPHAHkssvtsclYNLGKLYHEQGHYEEALSVYKEAIQKMPrqfapqslynmmgeaymrlsKLPEAEHW-YMES 552
Cdd:COG4785 138 PD----YAYAY--------LNRGIALYYLGRYELAIADLEKALELDP--------------------NDPERALWlYLAE 185
|
170 180 190
....*....|....*....|....*....|....*...
gi 1034578221 553 LRSKTDHIPAHLT--YGKLLALTGRKSEAEKLFLKAIE 588
Cdd:COG4785 186 RKLDPEKALALLLedWATAYLLQGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
569-694 |
4.83e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 4.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 569 LLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAE 648
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY----------------------------------DEAI 46
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1034578221 649 KyYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:COG3063 47 A-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
534-693 |
7.52e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.05 E-value: 7.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 534 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLiea 613
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK--- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 614 aemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 693
Cdd:COG5010 105 -------------------------------DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
561-705 |
1.04e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 561 PAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrq 640
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL------------------------------ 54
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034578221 641 aslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKL 705
Cdd:COG4783 55 ----DEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
354-443 |
2.53e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 354 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEsAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 431
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 1034578221 432 YYKLAIGSRPTL 443
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
638-702 |
2.74e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.74e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034578221 638 LRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEAnYLRALQLKPDDVITQSNL 702
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
443-517 |
3.42e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.93 E-value: 3.42e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034578221 443 LASAYLNTGIILMNQGRTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLYHEQGHYEEALSVYKEAIQ 517
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
507-609 |
4.20e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 507 EALSVYKEAIQKMPRQfaPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKA 586
Cdd:COG4235 1 EAIARLRQALAANPND--AEGWL-LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
90 100
....*....|....*....|...
gi 1034578221 587 IELDPTKGNCYMHYGQFLLEEAR 609
Cdd:COG4235 78 LALDPDNPEALYLLGLAAFQQGD 100
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
492-610 |
5.91e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 5.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 492 LYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 571
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 1034578221 572 LTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARL 610
Cdd:COG5010 100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
497-591 |
7.02e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 54.23 E-value: 7.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 497 KLYHEQGHYEEALSVYKEAIQKMPR-QFAPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIP---AHLTYGKLLAL 572
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLE 79
|
90
....*....|....*....
gi 1034578221 573 TGRKSEAEKLFLKAIELDP 591
Cdd:COG1729 80 LGDYDKARATLEELIKKYP 98
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
353-600 |
1.22e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.56 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 353 TAIRNGDWQNEEMLYRSGIKVNPAK--AWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 430
Cdd:TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSalALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 431 HYYKLAIGSRPTLASAYLNTGIILMNQGRTEEAR---RTFLKCSEIPDENLKDPHAH---------------------KS 486
Cdd:TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIqayRKALKRAPSSQNAIKLHRALlasgntaeavktleawlkthpND 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 487 SVTscLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNMmgeAYMRL-SKLPEAEHWYMESLRSKtDHIPAHL- 564
Cdd:TIGR02917 770 AVL--RTALAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNL---AWLYLeLKDPRALEYAERALKLA-PNIPAILd 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 1034578221 565 TYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHY 600
Cdd:TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
322-441 |
1.47e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.58 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 322 ARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAESAY 399
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1034578221 400 RNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRP 441
Cdd:COG5010 112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
422-520 |
2.10e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 422 ENSRFAEALHYYKLAIGSRPT---LASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHAhkssvtscLYNLGKL 498
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--------LLKLGLS 76
|
90 100
....*....|....*....|..
gi 1034578221 499 YHEQGHYEEALSVYKEAIQKMP 520
Cdd:COG1729 77 YLELGDYDKARATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
535-610 |
2.32e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 2.32e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034578221 535 AYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKlFLKAIELDPTKGNCYMHYGQFLLEEARL 610
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDY 75
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
393-558 |
3.49e-08 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 53.52 E-value: 3.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 393 SEAESAYrnaLYYRSNMAdmlynlgllLQENSRFAEALHYYK--LAIGSRPTLASAYL-NTGIILMNQGRTEEARRTFLK 469
Cdd:PRK02603 30 KKAKEAF---VYYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 470 CSEipdENLKDPhahkssvtSCLYNLGKLYHEQG--------------HYEEALSVYKEAIQKMPRQFApqslynmmgea 535
Cdd:PRK02603 98 ALE---LNPKQP--------SALNNIAVIYHKRGekaeeagdqdeaeaLFDKAAEYWKQAIRLAPNNYI----------- 155
|
170 180
....*....|....*....|...
gi 1034578221 536 ymrlsklpEAEHWYMESLRSKTD 558
Cdd:PRK02603 156 --------EAQNWLKTTGRSNID 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
635-702 |
7.92e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 7.92e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034578221 635 AHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
494-696 |
1.31e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.00 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 494 NLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLR---SKTDHIPAHLTYGKLL 570
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDralALPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 571 ALTGRKSEAEKLFLKAIELDPTKGNCYMHYGqflleearlieaaemakkaaeldstefdvvfnAAHMLRQAslNEAAEKY 650
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRG--------------------------------LAYLLLGD--YDAALED 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1034578221 651 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDV 696
Cdd:COG4785 130 FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
632-702 |
2.10e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 2.10e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034578221 632 FNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
493-689 |
2.44e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 493 YNLGKLYHEQGHYEEALSVYKEAIQ-KMPR-QFAPQ--SLYNMMGEAYMRLSKLPEAehwymeSLRSKTDHIPAHLTYGK 568
Cdd:TIGR02917 60 FLLGKIYLALGDYAAAEKELRKALSlGYPKnQVLPLlaRAYLLQGKFQQVLDELPGK------TLLDDEGAAELLALRGL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 569 LLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAE 648
Cdd:TIGR02917 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034578221 649 KYYDLAARLRPNYPAALMNLGAILHLNGRLQKAE---------------ANYLRAL 689
Cdd:TIGR02917 214 AAYRKAIALRPNNIAVLLALATILIEAGEFEEAEkhadallkkapnsplAHYLKAL 269
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
629-713 |
4.50e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 4.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 629 DVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNlrkLWNI 708
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN---LGLA 81
|
....*
gi 1034578221 709 MEKQG 713
Cdd:COG4783 82 LLKAG 86
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
364-583 |
5.66e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 51.42 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 364 EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNalyyrsnmADMLYNlglllqensrfaealhyyklaigsRPTL 443
Cdd:COG4700 48 EVLPELRNSRDARRVQRAARNALDPGRELRELEKALEF--------ADTVQN------------------------RVRL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 444 ASAYLntgiilmNQGRTEEARRTFLKCseipdenLKDPHAHKSSVtscLYNLGKLYHEQGHYEEALSvYKEAIQKMPRQF 523
Cdd:COG4700 96 ADALL-------ELGRYDEAIELYEEA-------LTGIFADDPHI---LLGLAQALFELGRYAEALE-TLEKLIAKNPDF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 524 APQSLYNMMGEAYMRLSKLPEAEHWYmESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLF 583
Cdd:COG4700 158 KSSDAHLLYARALEALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELL 216
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
428-658 |
1.15e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.91 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 428 EALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKdPHAHkssvtsclynLGKLYHEQGHYEE 507
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQ----------LGVTQYKEGSIAS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 508 ALSVYKEAIQKMPRqfAPQsLYNMMGEAYMRLSKLPEAEHWYMES--LRSKTDHIPAHLT--YGKLLALTGRK---SEAE 580
Cdd:TIGR00990 452 SMATFRRCKKNFPE--APD-VYNYYGELLLDQNKFDEAIEKFDTAieLEKETKPMYMNVLplINKALALFQWKqdfIEAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 581 KLFLKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEfdvvfnaAHMLRQASLNEAA-------EKYYDL 653
Cdd:TIGR00990 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-------GELVQAISYAEATrtqiqvqEDYPVL 601
|
....*
gi 1034578221 654 AARLR 658
Cdd:TIGR00990 602 ASKLQ 606
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
409-473 |
2.35e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 2.35e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034578221 409 MADMLYNLGLLLQENSRFAEALHYYKLAI--------GSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEI 473
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
393-517 |
2.40e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 51.01 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 393 SEAESAYRNALYYRsnMADMLYNLGLLLQENSRFAEALH------YYKLAIGSRPTLASAYLNTGIILMnqGRTEEARRT 466
Cdd:COG3899 737 PDPEEEYRLALLLE--LAEALYLAGRFEEAEALLERALAaralaaLAALRHGNPPASARAYANLGLLLL--GDYEEAYEF 812
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1034578221 467 FLKCSEIPDEnlkdpHAHKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQ 517
Cdd:COG3899 813 GELALALAER-----LGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
389-467 |
3.00e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 389 QSKISEAESAYRNAL--YYRSNMA-DMLYNLGLLLQENSRFAEALHYYKLAIGSRPT---LASAYLNTGIILMNQGRTEE 462
Cdd:COG1729 6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85
|
....*
gi 1034578221 463 ARRTF 467
Cdd:COG1729 86 ARATL 90
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
413-589 |
6.79e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.78 E-value: 6.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 413 LYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 492
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 493 YnLGKLyhEQGhyEEALSVYKEAIQKMPRQFAPQS------------LYNMMGEA-------YMR-LSKLPEAE---HWY 549
Cdd:cd24142 74 Y-LGQL--SGG--EEALQYYEKGIEILEEELQALQaasaeaeeeaeeLKRKLSSAlcalaeiYMTdLCDEPDAEqrcEEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1034578221 550 MES-LRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIEL 589
Cdd:cd24142 149 ITKaLELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
494-694 |
1.02e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 47.33 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 494 NLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPqslYNMMGEAYMRLsklpeaehwymeslrsktdhipahltygkllalt 573
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLA---YLALALYYQQL---------------------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 574 GRKSEAEKLFLKAIELDPTKGNCYMHYGQFLLEEARLieaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDL 653
Cdd:TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------------------------------EQAMQQFEQ 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1034578221 654 AARLrPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:TIGR02521 125 AIED-PLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
632-695 |
1.74e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.09 E-value: 1.74e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034578221 632 FNAAHMLRQASLNEAAEKYYDLAARLRPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
426-691 |
1.98e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 48.32 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 426 FAEALHYYKLAI------GSRPTLASAYLNTGIILMNQGRTEEARRTFLKC--SEIPDENLKDPHAHKSSVTSCLYNLGK 497
Cdd:COG3899 721 YAEALRYLERALellppdPEEEYRLALLLELAEALYLAGRFEEAEALLERAlaARALAALAALRHGNPPASARAYANLGL 800
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 498 LYHeqGHYEEALSVYKEAIQKMPRQFAPQSL---YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 574
Cdd:COG3899 801 LLL--GDYEEAYEFGELALALAERLGDRRLEaraLFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAA 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 575 RKSEAEKLFLKAIELDPTKGNCYM----HYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKY 650
Cdd:COG3899 879 AAAAAAALAAAAAAAARLLAAAAAalaaAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAAL 958
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1034578221 651 YDLAARLRPN--YPAALMNLGAILHLNGRLQKAEANYLRALQL 691
Cdd:COG3899 959 ALAAAAAAAAaaALAAAAAAAAAAAAAAAAAALEAAAAALLAL 1001
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
360-518 |
2.56e-05 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 46.96 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 360 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLG-LLLQENSRFAEALHYYK 434
Cdd:cd24145 128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 435 LAIGSRPTLASAYLNTGiilmNQGRTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLYHEQGHYEEALSV 511
Cdd:cd24145 207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281
|
....*..
gi 1034578221 512 YKEAIQK 518
Cdd:cd24145 282 YKEAISL 288
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
662-695 |
4.67e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 4.67e-05
10 20 30
....*....|....*....|....*....|....
gi 1034578221 662 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
492-521 |
4.90e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.58 E-value: 4.90e-05
10 20 30
....*....|....*....|....*....|
gi 1034578221 492 LYNLGKLYHEQGHYEEALSVYKEAIQKMPR 521
Cdd:pfam07719 4 LYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
388-472 |
1.12e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 43.46 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 388 SQSKISEAESAYRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAIGSRPTLASAYLNTGII-------LMNQ 457
Cdd:CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIchyrgeqAIEQ 126
|
90
....*....|....*
gi 1034578221 458 GRTEEARRTFLKCSE 472
Cdd:CHL00033 127 GDSEIAEAWFDQAAE 141
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
376-437 |
1.39e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.83 E-value: 1.39e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 376 AKAWGNLGNVLKSQSKISEAESAYRNALY--------YRSNMADMLYNLGLLLQENSRFAEALHYYKLAI 437
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
496-539 |
1.83e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 1.83e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1034578221 496 GKLYHEQGHYEEALSVYKEAIQKMPRQfaPQSLYNmMGEAYMRL 539
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDN--PEAYYN-LGLAYYKL 41
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
633-694 |
2.01e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 2.01e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 633 NAAHMLRQASLNEAAEKYYDLAARL--------RPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
491-520 |
4.36e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 4.36e-04
10 20 30
....*....|....*....|....*....|
gi 1034578221 491 CLYNLGKLYHEQGHYEEALSVYKEAIQKMP 520
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
662-695 |
4.36e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 4.36e-04
10 20 30
....*....|....*....|....*....|....
gi 1034578221 662 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
352-437 |
4.88e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 352 KTAIRNGDWQNEEMLYRSGIKVNP-----AKAWGNLGNVLKSQSKISEAESAYRNALYYRSN---MADMLYNLGLLLQEN 423
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|....
gi 1034578221 424 SRFAEALHYYKLAI 437
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
414-469 |
5.53e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.86 E-value: 5.53e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034578221 414 YNLGLLLQENSRFAEALHYYKLAIGSRPTL---ASAYLNTGIILMNQGRTEEARRTFLK 469
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESpdaAAALLLLGLAALRQGRLAEAAAAYRA 59
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
492-517 |
7.04e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 7.04e-04
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
491-517 |
7.15e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.52 E-value: 7.15e-04
10 20
....*....|....*....|....*..
gi 1034578221 491 CLYNLGKLYHEQGHYEEALSVYKEAIQ 517
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALA 27
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
662-694 |
1.16e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 1.16e-03
10 20 30
....*....|....*....|....*....|...
gi 1034578221 662 PAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
645-695 |
1.44e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 1.44e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1034578221 645 EAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
444-544 |
1.51e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 41.02 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 444 ASAYLNTGIILMNQGRTEEARRTFlkcseipdENLKD-----PHAHKSsvtscLYNLGKLYHEQGHYEEALSVYKEAIQK 518
Cdd:COG4105 32 AEELYEEAKEALEKGDYEKAIKLF--------EELEPrypgsPYAEQA-----QLMLAYAYYKQGDYEEAIAAADRFIKL 98
|
90 100
....*....|....*....|....*..
gi 1034578221 519 MPR-QFAPQSLYnMMGEAYMRLSKLPE 544
Cdd:COG4105 99 YPNsPNADYAYY-LRGLSYYEQSPDSD 124
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
381-441 |
1.82e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 1.82e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034578221 381 NLGNVLKSQSKISEAESAYRNAL---YYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRP 441
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
|
|
| DUF3856 |
pfam12968 |
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP ... |
501-589 |
2.40e-03 |
|
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family. A DALI search gives hits with the putative peptidyl-prolyl isomerase 2fbn (Z=16), the SGTA protein (Z=16), the PLCR protein 2qfc (Z=16), a putative FK506-binding protein (PDB:1qz2-A; DALI Z-score 15.3; RMSD 2.9; 16% sequence identity within 132 superimposed residues), and with the tetratricopeptide repeats of the protein phosphatase 5 (PDB:2bug; DALI Z-score 15.1; RMSD 2.5; 19% sequence identity within 117 superimposed residues).
Pssm-ID: 463761 [Multi-domain] Cd Length: 142 Bit Score: 39.07 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 501 EQGHYEEALSVYKEAIQkMPRQFAPQSLYNMMG----------EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKL- 569
Cdd:pfam12968 21 EAAAFEEAAESYRRAME-MSRTIPTEEAFDYDGfdafchaglsEALIGLGRYEEALHSAEKALRYFNRRGELHQDEGKLw 99
|
90 100 110
....*....|....*....|....*....|
gi 1034578221 570 --------LAL--TGRKSEAEKLFLKAIEL 589
Cdd:pfam12968 100 iaavfskaRALegLGRKEEAIKYFRMAGEM 129
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
354-466 |
3.17e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.84 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 354 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKsQSKISEAESAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 431
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPdnAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858
|
90 100 110
....*....|....*....|....*....|....*
gi 1034578221 432 YYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRT 466
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
645-713 |
3.62e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 3.62e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034578221 645 EAAEKYYDLAARLRPN---YPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQG 713
Cdd:COG1729 10 DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
376-403 |
4.10e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 4.10e-03
10 20
....*....|....*....|....*...
gi 1034578221 376 AKAWGNLGNVLKSQSKISEAESAYRNAL 403
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
488-517 |
5.03e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.17 E-value: 5.03e-03
10 20 30
....*....|....*....|....*....|
gi 1034578221 488 VTSCLYNLGKLYHEQGHYEEALSVYKEAIQ 517
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
425-485 |
5.75e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 5.75e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034578221 425 RFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFlkcSEIPDENLKDPHAHK 485
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALL---AALPAADPDDPRYAA 60
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
634-691 |
6.00e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 40.23 E-value: 6.00e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034578221 634 AAHMLRQASLNEAAEKYYDLAARL-----RPNYPAAL-MNLGAILHLNGRLQKAEANYLRALQL 691
Cdd:COG3899 711 AARRALARGAYAEALRYLERALELlppdpEEEYRLALlLELAEALYLAGRFEEAEALLERALAA 774
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
527-589 |
6.31e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 6.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034578221 527 SLYNMMGEAYMRLSKLPEAEHWYMESLR-----SKTDHIP---AHLTYGKLLALTGRKSEAEKLFLKAIEL 589
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrlLGPDHPLtatTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
492-517 |
8.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 34.29 E-value: 8.29e-03
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
497-607 |
9.09e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 38.74 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034578221 497 KLYHEQGHYEEALSVYKEAIQKMPRQfapqSLYNMMGEAymRLSKLPE----AEHWymesLRSKTDHIPAHLTYGKLLAL 572
Cdd:COG3071 201 RALIALGDHDEAERLLREALKRQWDP----RLVRLYGRL--QGGDPAKqlkrAEKW----LKKHPNDPDLLLALGRLCLR 270
|
90 100 110
....*....|....*....|....*....|....*
gi 1034578221 573 TGRKSEAEKLFLKAIELDPTkGNCYMHYGQfLLEE 607
Cdd:COG3071 271 NQLWGKAREYLEAALALRPS-AEAYAELAR-LLEQ 303
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
383-423 |
9.11e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 34.75 E-value: 9.11e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1034578221 383 GNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQEN 423
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| |
