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Conserved domains on  [gi|1126179429|ref|XP_019622115|]
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PREDICTED: uncharacterized protein LOC109468304 [Branchiostoma belcheri]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11471162)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
132-192 7.08e-20

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 84.11  E-value: 7.08e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1126179429 132 SSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLL 192
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
125-260 2.29e-19

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 91.92  E-value: 2.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 125 NNTFAGFSSLQTLSLTSNKLTNVrPTWFTGLKNLMSLTLSNNRIKQIePGSFAKLTRLFILDLENNLLQIVdPGWLFGMK 204
Cdd:COG4886   106 NEELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDL-PEELGNLT 182

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1126179429 205 SIMVINLGLNKIKSIsPTSFQHI-QPTWIDLSGNDLWSLDEDvFRGQSRLRSLHISS 260
Cdd:COG4886   183 NLKELDLSNNQITDL-PEPLGNLtNLEELDLSGNQLTDLPEP-LANLTNLETLDLSN 237
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
132-192 7.08e-20

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 84.11  E-value: 7.08e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1126179429 132 SSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLL 192
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
125-260 2.29e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 91.92  E-value: 2.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 125 NNTFAGFSSLQTLSLTSNKLTNVrPTWFTGLKNLMSLTLSNNRIKQIePGSFAKLTRLFILDLENNLLQIVdPGWLFGMK 204
Cdd:COG4886   106 NEELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDL-PEELGNLT 182

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1126179429 205 SIMVINLGLNKIKSIsPTSFQHI-QPTWIDLSGNDLWSLDEDvFRGQSRLRSLHISS 260
Cdd:COG4886   183 NLKELDLSNNQITDL-PEPLGNLtNLEELDLSGNQLTDLPEP-LANLTNLETLDLSN 237
LRR_8 pfam13855
Leucine rich repeat;
180-239 1.09e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 63.70  E-value: 1.09e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1126179429 180 TRLFILDLENNLLQIVDPGWLFGMKSIMVINLGLNKIKSISPTSFQHI-QPTWIDLSGNDL 239
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLpSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 113-259 8.35e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 59.80  E-value: 8.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 113 LTLVDAKITDVKNntFAGFSSLQTLSLTSNKLTNVRPtwFTGLKNLMSLTLSNNRIKQIEP-GSFAKLTRLFI------- 184
Cdd:cd21340     7 LYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIENlENLVNLKKLYLggnrisv 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 185 ------------LDLENNLLQ-----IVDPGWLFGM-KSIMVINLGLNKIKSISP-TSFQHIQptWIDLSGNDLWSLDE- 244
Cdd:cd21340    83 veglenltnleeLHIENQRLPpgeklTFDPRSLAALsNSLRVLNISGNNIDSLEPlAPLRNLE--QLDASNNQISDLEEl 160

                         170
                  ....*....|....*.
gi 1126179429 245 -DVFRGQSRLRSLHIS 259
Cdd:cd21340   161 lDLLSSWPSLRELDLT 176
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 122-239 3.70e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 57.55  E-value: 3.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 122 DVKNNTFAG--------FSSLQTLSLTSNKLTNVRPTWFtGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQ 193
Cdd:PLN00113  434 DISNNNLQGrinsrkwdMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1126179429 194 IVDPGWLFGMKSIMVINLGLNKIKSISPTSFQHIQP-TWIDLSGNDL 239
Cdd:PLN00113  513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVlSQLDLSQNQL 559
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 113-239 9.51e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 56.39  E-value: 9.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 113 LTLVDAKITDVKNNTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLL 192
Cdd:PLN00113  480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1126179429 193 QIVDPGWLFGMKSIMVINLGLNKIK-SISPT-SFQHIQPTWIdlSGNDL 239
Cdd:PLN00113  560 SGEIPKNLGNVESLVQVNISHNHLHgSLPSTgAFLAINASAV--AGNID 606
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 133-190 8.25e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.86  E-value: 8.25e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 133 SLQTLSLTSNKLTNVRPtwFTGLKNLMSLTLSNNRIKQIEP--GSFAKLTRLFILDLENN 190
Cdd:cd21340   121 SLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGN 178
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
132-192 7.08e-20

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 84.11  E-value: 7.08e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1126179429 132 SSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLL 192
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
125-260 2.29e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 91.92  E-value: 2.29e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 125 NNTFAGFSSLQTLSLTSNKLTNVrPTWFTGLKNLMSLTLSNNRIKQIePGSFAKLTRLFILDLENNLLQIVdPGWLFGMK 204
Cdd:COG4886   106 NEELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDL-PEELGNLT 182

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1126179429 205 SIMVINLGLNKIKSIsPTSFQHI-QPTWIDLSGNDLWSLDEDvFRGQSRLRSLHISS 260
Cdd:COG4886   183 NLKELDLSNNQITDL-PEPLGNLtNLEELDLSGNQLTDLPEP-LANLTNLETLDLSN 237
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
97-256 6.87e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 81.13  E-value: 6.87e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429  97 LSANSL----APFENSVVL-MLTLVDAKITDVKNnTFAGFSSLQTLSLTSNKLTNVrPTWFTGLKNLMSLTLSNNRIKQI 171
Cdd:COG4886   166 LSNNQLtdlpEELGNLTNLkELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDL-PEPLANLTNLETLDLSNNQLTDL 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 172 EpgSFAKLTRLFILDLENNllQIVDPGWLFGMKSIMVINLGLNKIKSISPTSFQHIQPTWIDLSGNDLWSLDEDVFRGQS 251
Cdd:COG4886   244 P--ELGNLTNLEELDLSNN--QLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLL 319


                  ....*
gi 1126179429 252 RLRSL 256
Cdd:COG4886   320 LTTLL 324
LRR_8 pfam13855
Leucine rich repeat;
157-216 8.52e-14

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 66.78  E-value: 8.52e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 157 NLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQIVDPGWLFGMKSIMVINLGLNKI 216
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
180-239 1.09e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 63.70  E-value: 1.09e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1126179429 180 TRLFILDLENNLLQIVDPGWLFGMKSIMVINLGLNKIKSISPTSFQHI-QPTWIDLSGNDL 239
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLpSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
113-168 5.12e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 58.69  E-value: 5.12e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1126179429 113 LTLVDAKITDVKNNTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRI 168
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 113-259 8.35e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 59.80  E-value: 8.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 113 LTLVDAKITDVKNntFAGFSSLQTLSLTSNKLTNVRPtwFTGLKNLMSLTLSNNRIKQIEP-GSFAKLTRLFI------- 184
Cdd:cd21340     7 LYLNDKNITKIDN--LSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIENlENLVNLKKLYLggnrisv 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 185 ------------LDLENNLLQ-----IVDPGWLFGM-KSIMVINLGLNKIKSISP-TSFQHIQptWIDLSGNDLWSLDE- 244
Cdd:cd21340    83 veglenltnleeLHIENQRLPpgeklTFDPRSLAALsNSLRVLNISGNNIDSLEPlAPLRNLE--QLDASNNQISDLEEl 160

                         170
                  ....*....|....*.
gi 1126179429 245 -DVFRGQSRLRSLHIS 259
Cdd:cd21340   161 lDLLSSWPSLRELDLT 176
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 122-239 3.70e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 57.55  E-value: 3.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 122 DVKNNTFAG--------FSSLQTLSLTSNKLTNVRPTWFtGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQ 193
Cdd:PLN00113  434 DISNNNLQGrinsrkwdMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1126179429 194 IVDPGWLFGMKSIMVINLGLNKIKSISPTSFQHIQP-TWIDLSGNDL 239
Cdd:PLN00113  513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVlSQLDLSQNQL 559
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 113-239 9.51e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 56.39  E-value: 9.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 113 LTLVDAKITDVKNNTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLL 192
Cdd:PLN00113  480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1126179429 193 QIVDPGWLFGMKSIMVINLGLNKIK-SISPT-SFQHIQPTWIdlSGNDL 239
Cdd:PLN00113  560 SGEIPKNLGNVESLVQVNISHNHLHgSLPSTgAFLAINASAV--AGNID 606
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 133-190 8.25e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.86  E-value: 8.25e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 133 SLQTLSLTSNKLTNVRPtwFTGLKNLMSLTLSNNRIKQIEP--GSFAKLTRLFILDLENN 190
Cdd:cd21340   121 SLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGN 178
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 113-239 4.95e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 47.54  E-value: 4.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 113 LTLVDAKITDVKNNTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLL 192
Cdd:PLN00113  241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1126179429 193 QIVDPGWLFGMKSIMVINLGLNKIKSISPTSF-QHIQPTWIDLSGNDL 239
Cdd:PLN00113  321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLgKHNNLTVLDLSTNNL 368
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 122-236 7.01e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 46.76  E-value: 7.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 122 DVKNNTFAG------FSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQIV 195
Cdd:PLN00113  124 NLSNNNFTGsiprgsIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1126179429 196 DPGWLFGMKSIMVINLGLNKIKSISP------TSFQHIQPTWIDLSG 236
Cdd:PLN00113  204 IPRELGQMKSLKWIYLGYNNLSGEIPyeigglTSLNHLDLVYNNLTG 250
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
96-260 7.53e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 46.08  E-value: 7.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429  96 VLSANSLAPFENSVVLMLTLVDAKITDVKNNTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNriKQIEPGS 175
Cdd:COG4886    14 LLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSL--LLLGLTD 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 176 FAKLTRLFILDLENNLLqivdpgwLFGMKSIMVINLGLNKIKSISP--TSFQHIQptWIDLSGNDLWSLDEDvFRGQSRL 253
Cdd:COG4886    92 LGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQLTDLPEelANLTNLK--ELDLSNNQLTDLPEP-LGNLTNL 161


                  ....*..
gi 1126179429 254 RSLHISS 260
Cdd:COG4886   162 KSLDLSN 168
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 119-226 9.04e-05

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 42.92  E-value: 9.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 119 KITDVKNNTFAGFSSLQTLSLTSNkLTNVRPTWFTGLkNLMSLTLSNNrIKQIEPGSFAKLTRLFILDLENNLLQIvdPG 198
Cdd:pfam13306  21 SLTSIGEYAFSNCTSLKSITLPSS-LTSIGSYAFYNC-SLTSITIPSS-LTSIGEYAFSNCSNLKSITLPSNLTSI--GS 95

                          90       100
                  ....*....|....*....|....*...
gi 1126179429 199 WLFGMKSIMVINLGlNKIKSISPTSFQH 226
Cdd:pfam13306  96 YAFSNCSLKSITIP-SSVTTIGSYAFSN 122
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 133-173 1.67e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.92  E-value: 1.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1126179429 133 SLQTLSLTSNKLTNVRPtwFTGLKNLMSLTLS-NNRIKQIEP 173
Cdd:pfam12799   2 NLEVLDLSNNQITDIPP--LAKLPNLETLDLSgNNKITDLSD 41
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 156-190 3.42e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.15  E-value: 3.42e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1126179429 156 KNLMSLTLSNNRIKQIEPgsFAKLTRLFILDLENN 190
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPP--LAKLPNLETLDLSGN 33
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 126-335 1.07e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 42.91  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 126 NTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQIVDPGWLFGMKS 205
Cdd:PLN00113  182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 206 IMVINLGLNKIK-SISPTSFQHIQPTWIDLSGNDL-WSLDEDVFRGQSrLRSLHISS----GMLPSAhdarpddmMWSLY 279
Cdd:PLN00113  262 LQYLFLYQNKLSgPIPPSIFSLQKLISLDLSDNSLsGEIPELVIQLQN-LEILHLFSnnftGKIPVA--------LTSLP 332

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1126179429 280 RLANAMTWSATLVVAVPRFLfcvsqhGVPTELSfwwVFDPSNNMLYDIVPKSFaCD 335
Cdd:PLN00113  333 RLQVLQLWSNKFSGEIPKNL------GKHNNLT---VLDLSTNNLTGEIPEGL-CS 378
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 134-265 1.36e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 42.53  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 134 LQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQ--IVDPGWlfGMKSIMVINL 211
Cdd:PLN00113  382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQgrINSRKW--DMPSLQMLSL 459

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1126179429 212 GLNKIKSISPTSFQHIQPTWIDLSGNDLWSLDEDVFRGQSRLRSLHIS----SGMLPS 265
Cdd:PLN00113  460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSenklSGEIPD 517
PLN03150 PLN03150
hypothetical protein; Provisional
 126-202 3.11e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 3.11e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1126179429 126 NTFAGFSSLQTLSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQIVDPGWLFG 202
Cdd:PLN03150  436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512
PLN03150 PLN03150
hypothetical protein; Provisional
 137-223 3.16e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 41.34  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126179429 137 LSLTSNKLTNVRPTWFTGLKNLMSLTLSNNRIKQIEPGSFAKLTRLFILDLENNLLQIVDPGWLFGMKSIMVINLGLNKI 216
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                  ....*..
gi 1126179429 217 KSISPTS 223
Cdd:PLN03150  503 SGRVPAA 509
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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