|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
25-344 |
7.86e-22 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
:
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 97.53 E-value: 7.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 25 WS--GPVPRPRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQWfipaVRGDIPPGCAAYGFVC--DGTRLLVFGG 99
Cdd:COG3055 3 WSslPDLPTPRSEAAAALLDGKVYVAGGLSGGsASNSFEVYDPATNTW----SELAPLPGPPRHHAAAvaQDGKLYVFGG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 100 MVEY---GKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLVGNKCYLFGGlandsedpkNNIPRYLNDLYIL 176
Cdd:COG3055 79 FTGAnpsSTPLNDVYVYDPATNTWTKL-------APMPTPRGGATALLLDGKIYVVGG---------WDDGGNVAWVEVY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 177 ELRPGSgvvaWDipiTYGVLPPPRESHTAVVYTEkdnkkSKLVIYGGMSGCRLGDLWTldidtltwNKPSLsgvaPLPRS 256
Cdd:COG3055 143 DPATGT----WT---QLAPLPTPRDHLAAAVLPD-----GKILVIGGRNGSGFSNTWT--------TLAPL----PTARA 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 257 LHSATTIGNKMYVFGGwvplvmddvkvathekEWKCTNTLACLNLDTMAWETIlmdtleDNIPRARAGHCAVAINTRLYI 336
Cdd:COG3055 199 GHAAAVLGGKILVFGG----------------ESGFSDEVEAYDPATNTWTAL------GELPTPRHGHAAVLTDGKVYV 256
|
330
....*....|
gi 2217391889 337 WSG--RDGYR 344
Cdd:COG3055 257 IGGetKPGVR 266
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
1062-1554 |
1.14e-03 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1062 GANHQRDARRACAAGTPAVIRISVATGALEAAQGSKSQCQTRQTSATSTTMTVMATGAPCSAGPLLG----PSMAREPGG 1137
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSladpPPPPPTPEP 2710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1138 RSPAFVQLAPL---SSKVRLSSPSIKDLPAGRHSHA-----VSTAAMTRSSVGAGEPRMAPVCESLQGGSPSTTVTVTAL 1209
Cdd:PHA03247 2711 APHALVSATPLppgPAAARQASPALPAAPAPPAVPAgpatpGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1210 EALLCPSATVTQVCSNPPCETHETGTTNTATTSNAG----SAQRVCSNPPCETHETGTTHTATTATSNGGTGQPEGGQQP 1285
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplppPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1286 PAGRPcethqttstgttmsvsvgallpdATSSHRTVESglevAAAPSVTPQAGTALLAPFPTQRvcsnPPCETHETGTTH 1365
Cdd:PHA03247 2871 PAAKP-----------------------AAPARPPVRR----LARPAVSRSTESFALPPDQPER----PPQPQAPPPPQP 2919
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1366 TATTVTSNMSSNQDPPPAASDQGEVESTQGDSVNITSSSAITTTVSSTLTRAVTTVTQSTPVPGPSVPKISSMTETAPRA 1445
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1446 LTTEVPIPAkiTVTIANTETSDMPFSAVDILQPPEELQvspgprqqlpprqllQSASTALMGESAEVLSASQTPELPAAV 1525
Cdd:PHA03247 3000 SLSRVSSWA--SSLALHEETDPPPVSLKQTLWPPDDTE---------------DSDADSLFDSDSERSDLEALDPLPPEP 3062
|
490 500
....*....|....*....|....*....
gi 2217391889 1526 DLSSTGEPSSGQESAGSAVVATVVVQPPP 1554
Cdd:PHA03247 3063 HDPFAHEPDPATPEAGARESPSSQFGPPP 3091
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1838-1867 |
2.48e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
:
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 39.02 E-value: 2.48e-03
10 20 30
....*....|....*....|....*....|
gi 2217391889 1838 LQPGTAYKFRVAGINACGRGPFSEISAFKT 1867
Cdd:cd00063 64 LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1873-1978 |
6.03e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
:
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 37.86 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1873 PGAPCAIKISK-SPDGAHLTWEPPSVTSGKIIEYSVylaiqssqaggELKSSTPAQLAFMRVYCGPSPSCLVqsSSLSnA 1951
Cdd:cd00063 1 PSPPTNLRVTDvTSTSVTLSWTPPEDDGGPITGYVV-----------EYREKGSGDWKEVEVTPGSETSYTL--TGLK-P 66
|
90 100
....*....|....*....|....*..
gi 2217391889 1952 HIDYTtkpaiiFRIAARNEKGYGPATQ 1978
Cdd:cd00063 67 GTEYE------FRVRAVNGGGESPPSE 87
|
|
| PHA03255 super family |
cl31530 |
BDLF3; Provisional |
617-757 |
7.64e-03 |
|
BDLF3; Provisional
The actual alignment was detected with superfamily member PHA03255:
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 40.27 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 617 VMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTI-ITTTQASGAGTKPTILGISSVSPSTT 695
Cdd:PHA03255 14 MILICETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSApITTTAILSTNTTTVTSTGTTVTPVPT 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217391889 696 KPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVmTSGTGAPAKIITAVPKIAT 757
Cdd:PHA03255 94 TSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSST-TSATTRITNATTLAPTLSS 154
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
25-344 |
7.86e-22 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 97.53 E-value: 7.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 25 WS--GPVPRPRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQWfipaVRGDIPPGCAAYGFVC--DGTRLLVFGG 99
Cdd:COG3055 3 WSslPDLPTPRSEAAAALLDGKVYVAGGLSGGsASNSFEVYDPATNTW----SELAPLPGPPRHHAAAvaQDGKLYVFGG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 100 MVEY---GKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLVGNKCYLFGGlandsedpkNNIPRYLNDLYIL 176
Cdd:COG3055 79 FTGAnpsSTPLNDVYVYDPATNTWTKL-------APMPTPRGGATALLLDGKIYVVGG---------WDDGGNVAWVEVY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 177 ELRPGSgvvaWDipiTYGVLPPPRESHTAVVYTEkdnkkSKLVIYGGMSGCRLGDLWTldidtltwNKPSLsgvaPLPRS 256
Cdd:COG3055 143 DPATGT----WT---QLAPLPTPRDHLAAAVLPD-----GKILVIGGRNGSGFSNTWT--------TLAPL----PTARA 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 257 LHSATTIGNKMYVFGGwvplvmddvkvathekEWKCTNTLACLNLDTMAWETIlmdtleDNIPRARAGHCAVAINTRLYI 336
Cdd:COG3055 199 GHAAAVLGGKILVFGG----------------ESGFSDEVEAYDPATNTWTAL------GELPTPRHGHAAVLTDGKVYV 256
|
330
....*....|
gi 2217391889 337 WSG--RDGYR 344
Cdd:COG3055 257 IGGetKPGVR 266
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
27-322 |
4.94e-16 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 83.08 E-value: 4.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 27 GPVPRPRHGHRAVAIKelIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGFVCDGTRLLVFGGMVE 102
Cdd:PLN02193 162 GPGLRCSHGIAQVGNK--IYSFGGEftpNQPIDKHLYVFDLETRTWSISPATGDVPHlSCLGVRMVSIGSTLYVFGGRDA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 103 YGKYsNDLYELQASRWEWKRLkakTP-KNGppPCPRLGHSFSLVGNKCYLFGGLANDSEdpknniPRYLNDLYILELRpg 181
Cdd:PLN02193 240 SRQY-NGFYSFDTTTNEWKLL---TPvEEG--PTPRSFHSMAADEENVYVFGGVSATAR------LKTLDSYNIVDKK-- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 182 sgvvaWDIPITygvlppPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSAT 261
Cdd:PLN02193 306 -----WFHCST------PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA 374
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217391889 262 TIGNKMYVFGGwvPLVMDDVkvaTHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRAR 322
Cdd:PLN02193 375 AVGKHIVIFGG--EIAMDPL---AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSR 430
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
32-69 |
7.75e-05 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 41.83 E-value: 7.75e-05
10 20 30
....*....|....*....|....*....|....*....
gi 2217391889 32 PRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQW 69
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGNqSLNSVEVYDPETNTW 39
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1062-1554 |
1.14e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1062 GANHQRDARRACAAGTPAVIRISVATGALEAAQGSKSQCQTRQTSATSTTMTVMATGAPCSAGPLLG----PSMAREPGG 1137
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSladpPPPPPTPEP 2710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1138 RSPAFVQLAPL---SSKVRLSSPSIKDLPAGRHSHA-----VSTAAMTRSSVGAGEPRMAPVCESLQGGSPSTTVTVTAL 1209
Cdd:PHA03247 2711 APHALVSATPLppgPAAARQASPALPAAPAPPAVPAgpatpGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1210 EALLCPSATVTQVCSNPPCETHETGTTNTATTSNAG----SAQRVCSNPPCETHETGTTHTATTATSNGGTGQPEGGQQP 1285
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplppPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1286 PAGRPcethqttstgttmsvsvgallpdATSSHRTVESglevAAAPSVTPQAGTALLAPFPTQRvcsnPPCETHETGTTH 1365
Cdd:PHA03247 2871 PAAKP-----------------------AAPARPPVRR----LARPAVSRSTESFALPPDQPER----PPQPQAPPPPQP 2919
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1366 TATTVTSNMSSNQDPPPAASDQGEVESTQGDSVNITSSSAITTTVSSTLTRAVTTVTQSTPVPGPSVPKISSMTETAPRA 1445
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1446 LTTEVPIPAkiTVTIANTETSDMPFSAVDILQPPEELQvspgprqqlpprqllQSASTALMGESAEVLSASQTPELPAAV 1525
Cdd:PHA03247 3000 SLSRVSSWA--SSLALHEETDPPPVSLKQTLWPPDDTE---------------DSDADSLFDSDSERSDLEALDPLPPEP 3062
|
490 500
....*....|....*....|....*....
gi 2217391889 1526 DLSSTGEPSSGQESAGSAVVATVVVQPPP 1554
Cdd:PHA03247 3063 HDPFAHEPDPATPEAGARESPSSQFGPPP 3091
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1838-1867 |
2.48e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 39.02 E-value: 2.48e-03
10 20 30
....*....|....*....|....*....|
gi 2217391889 1838 LQPGTAYKFRVAGINACGRGPFSEISAFKT 1867
Cdd:cd00063 64 LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1873-1978 |
6.03e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 37.86 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1873 PGAPCAIKISK-SPDGAHLTWEPPSVTSGKIIEYSVylaiqssqaggELKSSTPAQLAFMRVYCGPSPSCLVqsSSLSnA 1951
Cdd:cd00063 1 PSPPTNLRVTDvTSTSVTLSWTPPEDDGGPITGYVV-----------EYREKGSGDWKEVEVTPGSETSYTL--TGLK-P 66
|
90 100
....*....|....*....|....*..
gi 2217391889 1952 HIDYTtkpaiiFRIAARNEKGYGPATQ 1978
Cdd:cd00063 67 GTEYE------FRVRAVNGGGESPPSE 87
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
617-757 |
7.64e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 40.27 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 617 VMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTI-ITTTQASGAGTKPTILGISSVSPSTT 695
Cdd:PHA03255 14 MILICETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSApITTTAILSTNTTTVTSTGTTVTPVPT 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217391889 696 KPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVmTSGTGAPAKIITAVPKIAT 757
Cdd:PHA03255 94 TSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSST-TSATTRITNATTLAPTLSS 154
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
25-344 |
7.86e-22 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 97.53 E-value: 7.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 25 WS--GPVPRPRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQWfipaVRGDIPPGCAAYGFVC--DGTRLLVFGG 99
Cdd:COG3055 3 WSslPDLPTPRSEAAAALLDGKVYVAGGLSGGsASNSFEVYDPATNTW----SELAPLPGPPRHHAAAvaQDGKLYVFGG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 100 MVEY---GKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLVGNKCYLFGGlandsedpkNNIPRYLNDLYIL 176
Cdd:COG3055 79 FTGAnpsSTPLNDVYVYDPATNTWTKL-------APMPTPRGGATALLLDGKIYVVGG---------WDDGGNVAWVEVY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 177 ELRPGSgvvaWDipiTYGVLPPPRESHTAVVYTEkdnkkSKLVIYGGMSGCRLGDLWTldidtltwNKPSLsgvaPLPRS 256
Cdd:COG3055 143 DPATGT----WT---QLAPLPTPRDHLAAAVLPD-----GKILVIGGRNGSGFSNTWT--------TLAPL----PTARA 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 257 LHSATTIGNKMYVFGGwvplvmddvkvathekEWKCTNTLACLNLDTMAWETIlmdtleDNIPRARAGHCAVAINTRLYI 336
Cdd:COG3055 199 GHAAAVLGGKILVFGG----------------ESGFSDEVEAYDPATNTWTAL------GELPTPRHGHAAVLTDGKVYV 256
|
330
....*....|
gi 2217391889 337 WSG--RDGYR 344
Cdd:COG3055 257 IGGetKPGVR 266
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
76-345 |
3.00e-17 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 84.05 E-value: 3.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 76 GDIP-PGCAAYGFVCDGtRLLVFGGMvEYGKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLV-GNKCYLFG 153
Cdd:COG3055 7 PDLPtPRSEAAAALLDG-KVYVAGGL-SGGSASNSFEVYDPATNTWSEL-------APLPGPPRHHAAAVAqDGKLYVFG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 154 GLandseDPKNNIPRYLNDLYILELRPGSgvvaWdipITYGVLPPPRESHTAVVYtekDNKKskLVIYGGMSGCRLGDLW 233
Cdd:COG3055 78 GF-----TGANPSSTPLNDVYVYDPATNT----W---TKLAPMPTPRGGATALLL---DGKI--YVVGGWDDGGNVAWVE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 234 TLDIDTLTWNKPslsGVAPLPRSLHSATTIGN-KMYVFGGwvplvmddVKVATHEKEWkctntlaclnldtmawetilmd 312
Cdd:COG3055 141 VYDPATGTWTQL---APLPTPRDHLAAAVLPDgKILVIGG--------RNGSGFSNTW---------------------- 187
|
250 260 270
....*....|....*....|....*....|...
gi 2217391889 313 TLEDNIPRARAGHCAVAINTRLYIWSGRDGYRK 345
Cdd:COG3055 188 TTLAPLPTARAGHAAAVLGGKILVFGGESGFSD 220
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
27-322 |
4.94e-16 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 83.08 E-value: 4.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 27 GPVPRPRHGHRAVAIKelIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGFVCDGTRLLVFGGMVE 102
Cdd:PLN02193 162 GPGLRCSHGIAQVGNK--IYSFGGEftpNQPIDKHLYVFDLETRTWSISPATGDVPHlSCLGVRMVSIGSTLYVFGGRDA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 103 YGKYsNDLYELQASRWEWKRLkakTP-KNGppPCPRLGHSFSLVGNKCYLFGGLANDSEdpknniPRYLNDLYILELRpg 181
Cdd:PLN02193 240 SRQY-NGFYSFDTTTNEWKLL---TPvEEG--PTPRSFHSMAADEENVYVFGGVSATAR------LKTLDSYNIVDKK-- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 182 sgvvaWDIPITygvlppPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSAT 261
Cdd:PLN02193 306 -----WFHCST------PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA 374
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2217391889 262 TIGNKMYVFGGwvPLVMDDVkvaTHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRAR 322
Cdd:PLN02193 375 AVGKHIVIFGG--EIAMDPL---AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSR 430
|
|
| PLN02153 |
PLN02153 |
epithiospecifier protein |
12-330 |
3.12e-15 |
|
epithiospecifier protein
Pssm-ID: 177814 [Multi-domain] Cd Length: 341 Bit Score: 79.26 E-value: 3.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 12 AVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGF 87
Cdd:PLN02153 2 APTLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGElkpNEHIDKDLYVFDFNTHTWSIAPANGDVPRiSCLGVRM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 88 VCDGTRLLVFGGMVEYGKYsNDLYELQASRWEWKRLKAKTPKNGPPPcpRLGHSFSLVGNKCYLFGGLANDS-------- 159
Cdd:PLN02153 82 VAVGTKLYIFGGRDEKREF-SDFYSYDTVKNEWTFLTKLDEEGGPEA--RTFHSMASDENHVYVFGGVSKGGlmktperf 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 160 ----------------EDPKNNiprylndlyiLELRPGSG--VVAWDIPITYGVLpppreshTAVVYTEKDNKKSKLVIY 221
Cdd:PLN02153 159 rtieayniadgkwvqlPDPGEN----------FEKRGGAGfaVVQGKIWVVYGFA-------TSILPGGKSDYESNAVQF 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 222 ggmsgcrlgdlwtLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWvplVMDDVKvaTHEKEWKCTNTLACLNL 301
Cdd:PLN02153 222 -------------FDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE---VWPDLK--GHLGPGTLSNEGYALDT 283
|
330 340
....*....|....*....|....*....
gi 2217391889 302 DTMAWETiLMDTLEDNIPRARAGHCAVAI 330
Cdd:PLN02153 284 ETLVWEK-LGECGEPAMPRGWTAYTTATV 311
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
126-272 |
3.27e-08 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 58.43 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 126 KTPKNGPPPCPRLGHSFSLVGNKCYLFGGlandSEDPKNNIPRYlndLYILELRPGSgvvaWDIPITYGVLPppresHTA 205
Cdd:PLN02193 155 KVEQKGEGPGLRCSHGIAQVGNKIYSFGG----EFTPNQPIDKH---LYVFDLETRT----WSISPATGDVP-----HLS 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217391889 206 VVYTEKDNKKSKLVIYGGMSGCR-LGDLWTLDIDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGG 272
Cdd:PLN02193 219 CLGVRMVSIGSTLYVFGGRDASRqYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286
|
|
| PRK14131 |
PRK14131 |
N-acetylneuraminate epimerase; |
18-99 |
1.73e-05 |
|
N-acetylneuraminate epimerase;
Pssm-ID: 237617 [Multi-domain] Cd Length: 376 Bit Score: 49.24 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 18 RWKRVVGWSGPvprPRHGHRAVAIKELIVVFGG----GNEG---IVDELHVYNTATNQWFIPAVRGdiPPGCA-AYGFVC 89
Cdd:PRK14131 63 GWTKIAAFPGG---PREQAVAAFIDGKLYVFGGigktNSEGspqVFDDVYKYDPKTNSWQKLDTRS--PVGLAgHVAVSL 137
|
90
....*....|
gi 2217391889 90 DGTRLLVFGG 99
Cdd:PRK14131 138 HNGKAYITGG 147
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
27-114 |
4.33e-05 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 47.46 E-value: 4.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 27 GPVPRPRHGHRAVAIKELIVVFGGGNeGIVDELHVYNTATNQWFipaVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKY 106
Cdd:COG3055 191 APLPTARAGHAAAVLGGKILVFGGES-GFSDEVEAYDPATNTWT---ALGELPTPRHGHAAVLTDGKVYVIGGETKPGVR 266
|
....*...
gi 2217391889 107 SNDLYELQ 114
Cdd:COG3055 267 TPLVTSAE 274
|
|
| PLN02193 |
PLN02193 |
nitrile-specifier protein |
242-393 |
7.47e-05 |
|
nitrile-specifier protein
Pssm-ID: 177844 [Multi-domain] Cd Length: 470 Bit Score: 47.64 E-value: 7.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 242 WNKPSLSGVAPLPRSLHSATTIGNKMYVFGG-WVPlvmdDVKVATHekewkctntLACLNLDTMAWEtilMDTLEDNIPR 320
Cdd:PLN02193 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGeFTP----NQPIDKH---------LYVFDLETRTWS---ISPATGDVPH 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 321 ARA-GHCAVAINTRLYIWSGRDGYRK--AWNNQVCCKDLWYLET--EKPPPPARVQLVRANTNSLEVSWGAVATA----- 390
Cdd:PLN02193 217 LSClGVRMVSIGSTLYVFGGRDASRQynGFYSFDTTTNEWKLLTpvEEGPTPRSFHSMAADEENVYVFGGVSATArlktl 296
|
...
gi 2217391889 391 DSY 393
Cdd:PLN02193 297 DSY 299
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
32-69 |
7.75e-05 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 41.83 E-value: 7.75e-05
10 20 30
....*....|....*....|....*....|....*....
gi 2217391889 32 PRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQW 69
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGNqSLNSVEVYDPETNTW 39
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
264-330 |
1.12e-04 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 41.51 E-value: 1.12e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217391889 264 GNKMYVFGGWVPLVMDdvkvathekewkCTNTLACLNLDTMAWETIlmdtleDNIPRARAGHCAVAI 330
Cdd:pfam13415 1 GDKLYIFGGLGFDGQT------------RLNDLYVYDLDTNTWTQI------GDLPPPRSGHSATYI 49
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
241-348 |
1.51e-04 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 45.92 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 241 TWNK-PSLsgvaPLPRSLHSATTIGNKMYVFGGWvplvmddvkvatheKEWKCTNTLACLNLDTMAWETIlmdtleDNIP 319
Cdd:COG3055 2 TWSSlPDL----PTPRSEAAAALLDGKVYVAGGL--------------SGGSASNSFEVYDPATNTWSEL------APLP 57
|
90 100 110
....*....|....*....|....*....|
gi 2217391889 320 RARAGH-CAVAINTRLYIWSGRDGYRKAWN 348
Cdd:COG3055 58 GPPRHHaAAVAQDGKLYVFGGFTGANPSST 87
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
215-263 |
3.74e-04 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 39.97 E-value: 3.74e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 2217391889 215 KSKLVIYGG---MSGCRLGDLWTLDIDTLTWNKPslsGVAPLPRSLHSATTI 263
Cdd:pfam13415 1 GDKLYIFGGlgfDGQTRLNDLYVYDLDTNTWTQI---GDLPPPRSGHSATYI 49
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1062-1554 |
1.14e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1062 GANHQRDARRACAAGTPAVIRISVATGALEAAQGSKSQCQTRQTSATSTTMTVMATGAPCSAGPLLG----PSMAREPGG 1137
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSladpPPPPPTPEP 2710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1138 RSPAFVQLAPL---SSKVRLSSPSIKDLPAGRHSHA-----VSTAAMTRSSVGAGEPRMAPVCESLQGGSPSTTVTVTAL 1209
Cdd:PHA03247 2711 APHALVSATPLppgPAAARQASPALPAAPAPPAVPAgpatpGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1210 EALLCPSATVTQVCSNPPCETHETGTTNTATTSNAG----SAQRVCSNPPCETHETGTTHTATTATSNGGTGQPEGGQQP 1285
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGplppPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1286 PAGRPcethqttstgttmsvsvgallpdATSSHRTVESglevAAAPSVTPQAGTALLAPFPTQRvcsnPPCETHETGTTH 1365
Cdd:PHA03247 2871 PAAKP-----------------------AAPARPPVRR----LARPAVSRSTESFALPPDQPER----PPQPQAPPPPQP 2919
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1366 TATTVTSNMSSNQDPPPAASDQGEVESTQGDSVNITSSSAITTTVSSTLTRAVTTVTQSTPVPGPSVPKISSMTETAPRA 1445
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1446 LTTEVPIPAkiTVTIANTETSDMPFSAVDILQPPEELQvspgprqqlpprqllQSASTALMGESAEVLSASQTPELPAAV 1525
Cdd:PHA03247 3000 SLSRVSSWA--SSLALHEETDPPPVSLKQTLWPPDDTE---------------DSDADSLFDSDSERSDLEALDPLPPEP 3062
|
490 500
....*....|....*....|....*....
gi 2217391889 1526 DLSSTGEPSSGQESAGSAVVATVVVQPPP 1554
Cdd:PHA03247 3063 HDPFAHEPDPATPEAGARESPSSQFGPPP 3091
|
|
| Kelch_4 |
pfam13418 |
Galactose oxidase, central domain; |
32-80 |
1.32e-03 |
|
Galactose oxidase, central domain;
Pssm-ID: 433191 [Multi-domain] Cd Length: 49 Bit Score: 38.36 E-value: 1.32e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 2217391889 32 PRHGHRAVAIKE-LIVVFGG--GNEGIVDELHVYNTATNQWfipAVRGDIPP 80
Cdd:pfam13418 1 PRAYHTSTSIPDdTIYLFGGegEDGTLLSDLWVFDLSTNEW---TRLGSLPS 49
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1838-1867 |
2.48e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 39.02 E-value: 2.48e-03
10 20 30
....*....|....*....|....*....|
gi 2217391889 1838 LQPGTAYKFRVAGINACGRGPFSEISAFKT 1867
Cdd:cd00063 64 LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
|
|
| Kelch_5 |
pfam13854 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
30-67 |
2.58e-03 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 433528 [Multi-domain] Cd Length: 41 Bit Score: 37.54 E-value: 2.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2217391889 30 PRPRHGHRAVAIKELIVVFGG---GNEGIVDELHVYNTATN 67
Cdd:pfam13854 1 PVPRYGHCAVTVGDYIYLYGGytgGEGQPSDDVYVLSLPTF 41
|
|
| Kelch_5 |
pfam13854 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
319-351 |
2.76e-03 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 433528 [Multi-domain] Cd Length: 41 Bit Score: 37.16 E-value: 2.76e-03
10 20 30
....*....|....*....|....*....|...
gi 2217391889 319 PRARAGHCAVAINTRLYIWSGRDGYRKAWNNQV 351
Cdd:pfam13854 1 PVPRYGHCAVTVGDYIYLYGGYTGGEGQPSDDV 33
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1873-1978 |
6.03e-03 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 37.86 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 1873 PGAPCAIKISK-SPDGAHLTWEPPSVTSGKIIEYSVylaiqssqaggELKSSTPAQLAFMRVYCGPSPSCLVqsSSLSnA 1951
Cdd:cd00063 1 PSPPTNLRVTDvTSTSVTLSWTPPEDDGGPITGYVV-----------EYREKGSGDWKEVEVTPGSETSYTL--TGLK-P 66
|
90 100
....*....|....*....|....*..
gi 2217391889 1952 HIDYTtkpaiiFRIAARNEKGYGPATQ 1978
Cdd:cd00063 67 GTEYE------FRVRAVNGGGESPPSE 87
|
|
| PHA03255 |
PHA03255 |
BDLF3; Provisional |
617-757 |
7.64e-03 |
|
BDLF3; Provisional
Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 40.27 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217391889 617 VMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTI-ITTTQASGAGTKPTILGISSVSPSTT 695
Cdd:PHA03255 14 MILICETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSApITTTAILSTNTTTVTSTGTTVTPVPT 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2217391889 696 KPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVmTSGTGAPAKIITAVPKIAT 757
Cdd:PHA03255 94 TSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSST-TSATTRITNATTLAPTLSS 154
|
|
| Kelch_3 |
pfam13415 |
Galactose oxidase, central domain; |
146-208 |
9.19e-03 |
|
Galactose oxidase, central domain;
Pssm-ID: 433188 [Multi-domain] Cd Length: 49 Bit Score: 36.11 E-value: 9.19e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2217391889 146 GNKCYLFGGLANDSEDpknniprYLNDLYilELRPGSGVVAwdipiTYGVLPPPRESHTAVVY 208
Cdd:pfam13415 1 GDKLYIFGGLGFDGQT-------RLNDLY--VYDLDTNTWT-----QIGDLPPPRSGHSATYI 49
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
254-273 |
9.36e-03 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 36.05 E-value: 9.36e-03
|
| |
