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Conserved domains on  [gi|2326909430|ref|XP_051772919|]
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tumor necrosis factor alpha-induced protein 3 [Ctenopharyngodon idella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OTU_TNFAIP3 cd22766
OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis ...
 45-263 3.73e-132

OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3) is also called OTU domain-containing protein 7C (OTUD7C), DNA-binding protein A20, or zinc finger protein A20. It is a ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) activities. It antagonizes IKK [IkappaB (inhibitor of kappaB) kinase] activation by modulating Lys63-linked polyubiquitination of cytokine-receptor-associated factors including TRAF2/6 (tumour-necrosis-factor-receptor-associated factor 2/6) and RIP1 (receptor-interacting protein 1). It can also inhibit IKK through a non-catalytic mechanism which involves polyubiquitin. In vitro, TNFAIP3 is able to deubiquitinate 'Lys-11'-, 'Lys-48'- and 'Lys-63' polyubiquitin chains. TNFAIP3 contains several A20-type zinc fingers that mediate the ubiquitin ligase activity and an OTU (ovarian tumor) domain that contains the DUB activity. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


:

Pssm-ID: 438603  Cd Length: 220  Bit Score: 391.24  E-value: 3.73e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  45 RSMHRYTLEMIRMSQFPQAFREVIQAAILDRAMQSSLEQEKRLNWCREVKKLVPLRTNGDGNCLLHAASQYLLGVQDTDL 124
Cdd:cd22766     1 LTMHRYTLQLPRLCQFPPDFREFLQKALIDRNIQRTLEEAKKLNWCREVRKLVPLKTTGDGNCLLHAVSLYMWGVQDTDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 125 VLRKALYAVLKETDTSNFRTRFQTELLHSQEFTQTGLRYSTLNWEEEWVKIVEMASPVSSS--NGLQFDSLEDIHIFVLS 202
Cdd:cd22766    81 VLRKALYEALVETDTRNFKLRWQRERLKSQEFVGTGLRYDTREWEEEWDNVVKMASPESKPaaGGLPYNSLEEIHIFVLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2326909430 203 NILRRPIIVIADQVLRSMKsGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLI 263
Cdd:cd22766   161 NILRRPIIVIADDMLRSLE-GSSLAPLNFGGIYLPLHWPPQECYKYPIVLGYDSQHFTPLV 220
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 464-488 5.68e-04

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


:

Pssm-ID: 128555  Cd Length: 26  Bit Score: 37.57  E-value: 5.68e-04
                           10        20
                   ....*....|....*....|....*
gi 2326909430  464 AMKCKTPGCLFTLSVEHDGLCERCF 488
Cdd:smart00259   1 PIKCRRPGCGFFGNPATEGLCSKCF 25
 
Name Accession Description Interval E-value
OTU_TNFAIP3 cd22766
OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis ...
 45-263 3.73e-132

OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3) is also called OTU domain-containing protein 7C (OTUD7C), DNA-binding protein A20, or zinc finger protein A20. It is a ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) activities. It antagonizes IKK [IkappaB (inhibitor of kappaB) kinase] activation by modulating Lys63-linked polyubiquitination of cytokine-receptor-associated factors including TRAF2/6 (tumour-necrosis-factor-receptor-associated factor 2/6) and RIP1 (receptor-interacting protein 1). It can also inhibit IKK through a non-catalytic mechanism which involves polyubiquitin. In vitro, TNFAIP3 is able to deubiquitinate 'Lys-11'-, 'Lys-48'- and 'Lys-63' polyubiquitin chains. TNFAIP3 contains several A20-type zinc fingers that mediate the ubiquitin ligase activity and an OTU (ovarian tumor) domain that contains the DUB activity. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438603  Cd Length: 220  Bit Score: 391.24  E-value: 3.73e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  45 RSMHRYTLEMIRMSQFPQAFREVIQAAILDRAMQSSLEQEKRLNWCREVKKLVPLRTNGDGNCLLHAASQYLLGVQDTDL 124
Cdd:cd22766     1 LTMHRYTLQLPRLCQFPPDFREFLQKALIDRNIQRTLEEAKKLNWCREVRKLVPLKTTGDGNCLLHAVSLYMWGVQDTDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 125 VLRKALYAVLKETDTSNFRTRFQTELLHSQEFTQTGLRYSTLNWEEEWVKIVEMASPVSSS--NGLQFDSLEDIHIFVLS 202
Cdd:cd22766    81 VLRKALYEALVETDTRNFKLRWQRERLKSQEFVGTGLRYDTREWEEEWDNVVKMASPESKPaaGGLPYNSLEEIHIFVLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2326909430 203 NILRRPIIVIADQVLRSMKsGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLI 263
Cdd:cd22766   161 NILRRPIIVIADDMLRSLE-GSSLAPLNFGGIYLPLHWPPQECYKYPIVLGYDSQHFTPLV 220
OTU pfam02338
OTU-like cysteine protease; This family is comprised of a group of predicted cysteine ...
 102-259 3.81e-30

OTU-like cysteine protease; This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases.


Pssm-ID: 426728 [Multi-domain]  Cd Length: 127  Bit Score: 115.24  E-value: 3.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 102 NGDGNCLLHAASQYLLGVQDtdlVLRKALYAVLKETDTSNFRtrfqtelLHSQEFTQTglrystlnWEEEWVKIVEMASP 181
Cdd:pfam02338   1 PGDGNCLYRSISHQLWGVHD---VLRKMLVQELRETLAEYMR-------EHKEEFEPF--------LEDDETGDIIEIEQ 62

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2326909430 182 VSSSNGlqfdsleDIHIFVLSNILRRPIIVIadqvlrSMKSGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHF 259
Cdd:pfam02338  63 TGAWGG-------EIEIFALAHILRRPIIVY------KSEGGEELGGLKEYGIYLPLGWDPSLCLVYPRHLYYLGGHY 127
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 464-488 5.68e-04

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


Pssm-ID: 128555  Cd Length: 26  Bit Score: 37.57  E-value: 5.68e-04
                           10        20
                   ....*....|....*....|....*
gi 2326909430  464 AMKCKTPGCLFTLSVEHDGLCERCF 488
Cdd:smart00259   1 PIKCRRPGCGFFGNPATEGLCSKCF 25
 
Name Accession Description Interval E-value
OTU_TNFAIP3 cd22766
OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis ...
 45-263 3.73e-132

OTU (ovarian tumor) domain of tumor necrosis factor alpha induced protein 3; Tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3) is also called OTU domain-containing protein 7C (OTUD7C), DNA-binding protein A20, or zinc finger protein A20. It is a ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) activities. It antagonizes IKK [IkappaB (inhibitor of kappaB) kinase] activation by modulating Lys63-linked polyubiquitination of cytokine-receptor-associated factors including TRAF2/6 (tumour-necrosis-factor-receptor-associated factor 2/6) and RIP1 (receptor-interacting protein 1). It can also inhibit IKK through a non-catalytic mechanism which involves polyubiquitin. In vitro, TNFAIP3 is able to deubiquitinate 'Lys-11'-, 'Lys-48'- and 'Lys-63' polyubiquitin chains. TNFAIP3 contains several A20-type zinc fingers that mediate the ubiquitin ligase activity and an OTU (ovarian tumor) domain that contains the DUB activity. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438603  Cd Length: 220  Bit Score: 391.24  E-value: 3.73e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  45 RSMHRYTLEMIRMSQFPQAFREVIQAAILDRAMQSSLEQEKRLNWCREVKKLVPLRTNGDGNCLLHAASQYLLGVQDTDL 124
Cdd:cd22766     1 LTMHRYTLQLPRLCQFPPDFREFLQKALIDRNIQRTLEEAKKLNWCREVRKLVPLKTTGDGNCLLHAVSLYMWGVQDTDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 125 VLRKALYAVLKETDTSNFRTRFQTELLHSQEFTQTGLRYSTLNWEEEWVKIVEMASPVSSS--NGLQFDSLEDIHIFVLS 202
Cdd:cd22766    81 VLRKALYEALVETDTRNFKLRWQRERLKSQEFVGTGLRYDTREWEEEWDNVVKMASPESKPaaGGLPYNSLEEIHIFVLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2326909430 203 NILRRPIIVIADQVLRSMKsGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLI 263
Cdd:cd22766   161 NILRRPIIVIADDMLRSLE-GSSLAPLNFGGIYLPLHWPPQECYKYPIVLGYDSQHFTPLV 220
OTU_C64 cd22750
OTU (ovarian tumor) domain of family C64 cysteine proteases; This group includes proteins ...
 75-263 2.67e-74

OTU (ovarian tumor) domain of family C64 cysteine proteases; This group includes proteins classified as family C64 cysteine protease by MEROPS, such as tumor necrosis factor (TNF) alpha-induced protein 3 (TNFAIP3), ZRANB1, OTU domain-containing protein 7A (OTUD7A), and OTUD7B. It also includes VCIP135. These proteins are deubiquitinases (DUBs)/ubiquitin thioesterases (EC 3.4.19.12) that mediates the deubiquitination of protein substrates. TNFAIP3 also contains ubiquitin ligase activity. It antagonizes IKK [IkappaB (inhibitor of kappaB) kinase] activation by modulating Lys63-linked polyubiquitination of cytokine-receptor-associated factors including TRAF2/6 (tumour-necrosis-factor-receptor-associated factor 2/6) and RIP1 (receptor-interacting protein 1). ZRANB1 binds, deubiquitinates, and stabilizes EZH2, which is the catalytic component of the Polycomb repressive complex 2 (PRC2) that silences gene transcription by methylating histone H3 at lysine 27 and is mutated or highly expressed in many types of cancer, including lymphoma, melanoma, prostate cancer, ovarian cancer, and breast cancer. OTUD7A has been identified as a critical gene for brain function, while OTUD7B functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. VCIP135 controls Golgi membrane dynamics in the cell cycle and is required for Golgi and ER assembly. This group belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad.


Pssm-ID: 438587  Cd Length: 185  Bit Score: 239.16  E-value: 2.67e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  75 RAMQSSLEQEKRLNWCREVKKLVPLRTNGDGNCLLHAASQYLLGVQDTDLVLRKALYAVLKETDTSNFRTRFQTELLHSQ 154
Cdd:cd22750     1 RDLKDDLESEKVINWCRGVSRLVPLHTRGDGNCLLHAVSLALWGVEDRDLLLRSALHETLQNDQERRFRARWRRQQLKSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 155 EftQTGLRYSTLNWEEEWVKIVEMASPvSSSNGLQFDSLEDIHIFVLSNILRRPIIVIADQVLRSmKSGSSFSPLNVGGI 234
Cdd:cd22750    81 Q--ELGLSLDEEALQAEWEEILKAAET-PTVPAGPGSYLEEIHIFVLANVLRRPIIVLADDSARS-LEGSALQDNGMSGI 156

                         170       180
                  ....*....|....*....|....*....
gi 2326909430 235 YLPLHWPPGECYKYPIVLGYDSQHFAPLI 263
Cdd:cd22750   157 YLPLLWPPSECSRSPLALGYSNGHFSPLV 185
OTU_OTUD7 cd22768
OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; ...
 75-263 1.01e-64

OTU (ovarian tumor) domain of OTU domain-containing proteins 7A, 7B, and similar proteins; This subfamily consists of OTU domain-containing protein 7A (OTUD7A), OTUD7B, and similar proteins. OTUD7A and OTUD7B are deubiquitinases (DUBs)/ubiquitin thioesterases (EC 3.4.19.12) that specifically target Lys11-linked polyubiquitin. OTUD7A, also called zinc finger protein Cezanne 2, has been identified as a critical gene for brain function. It localizes to dendritic and spine compartments in cortical neurons, and its reduced levels contributed to dendritic spine and dendrite outgrowth deficits. OTUD7B, also called zinc finger protein Cezanne, functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. OTUD7 proteins belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. They are classified as family C64 cysteine proteases by MEROPS.


Pssm-ID: 438605  Cd Length: 208  Bit Score: 214.48  E-value: 1.01e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  75 RAMQSSLEQEKRLNWCREV---KKLVPLRTNGDGNCLLHAASQYLLGVQDTDLVLRKALYAVL---KETDTSNFRTRFQT 148
Cdd:cd22768     1 TSTLVSLEQAGRLNWWAKDggcQRLLPLATTGDGNCLLHAASLGMWGFHDRLLTLRKALYETLtssAAKEALKRRWRWQQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 149 ellhSQEFTQTGLRYSTLNWEEEWVKIVEMASP-----------------VSSSNGLQFDSLEDIHIFVLSNILRRPIIV 211
Cdd:cd22768    81 ----TQVNKEAGLVYSEEEWEREWKSLLKLASTeprsqpspssgseleevIENSSDPTYESLEEIHVFVLAHVLRRPIIV 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2326909430 212 IADQVLRSMkSGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLI 263
Cdd:cd22768   157 VADTMLRDS-NGEPLAPIPFGGIYLPLECPPSECHRSPLVLAYDAAHFSALV 207
OTU_OTUD7B cd22772
OTU (ovarian tumor) domain of OTU domain-containing protein 7B; OTU domain-containing protein ...
 75-264 2.38e-53

OTU (ovarian tumor) domain of OTU domain-containing protein 7B; OTU domain-containing protein 7B (OTUD7B) is also called cellular zinc finger anti-NF-kappa-B protein, zinc finger A20 domain-containing protein 1, or zinc finger protein Cezanne. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that specifically targets Lys11-linked polyubiquitin. It functions as a negative regulator of the non-canonical NF-kappaB pathway by mediating the deubiquitination of TRAF3, an inhibitor of the NF-kappaB pathway, resulting in preventing TRAF3 proteolysis and over-activation of non-canonical NF-kappaB. OTUD7B also deubiquitinates ZAP70, and thus, regulates T cell receptor (TCR) signaling. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438609  Cd Length: 207  Bit Score: 183.70  E-value: 2.38e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  75 RAMQSSLEQEKRLNWCREV----KKLVPLRTNGDGNCLLHAASQYLLGVQDTDLVLRKALYAVLK---ETDTSNFRTRFQ 147
Cdd:cd22772     1 QSMLVALEQAGRLNWWVSVdptcQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKALYALMEkgvEKEALKRRWRWQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 148 tellHSQEFTQTGLRYSTLNWEEEWVKIVEMASP---------------VSSSNGLQFDSLEDIHIFVLSNILRRPIIVI 212
Cdd:cd22772    81 ----QTQQNKESGLVYTEDEWQKEWNELIKLASSeprmhygtngancggVESSEEPVYESLEEFHVFVLAHVLRRPIVVV 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2326909430 213 ADQVLRSmKSGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLIT 264
Cdd:cd22772   157 ADTMLRD-SGGEAFAPIPFGGIYLPLEVPASKCHRSPLVLAYDQAHFSALVS 207
OTU_OTUD7A cd22773
OTU (ovarian tumor) domain of OTU domain-containing protein 7A; OTU domain-containing protein ...
 75-264 3.05e-50

OTU (ovarian tumor) domain of OTU domain-containing protein 7A; OTU domain-containing protein 7A (OTUD7A), also called zinc finger protein Cezanne 2, is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that specifically targets Lys11-linked polyubiquitin. OTUD7A has been identified as a critical gene for brain function. It localizes to dendritic and spine compartments in cortical neurons, and its reduced levels contributed to dendritic spine and dendrite outgrowth deficits. A homozygous OTUD7A missense variant located within the OTU catalytic domain is linked to early-onset epileptic encephalopathy and proteasome dysfunction. OTUD7A belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438610  Cd Length: 207  Bit Score: 175.25  E-value: 3.05e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  75 RAMQSSLEQEKRLNW----CREVKKLVPLRTNGDGNCLLHAASQYLLGVQDTDLVLRKALYAVLK---ETDTSNFRTRFQ 147
Cdd:cd22773     1 QSTMVALEQAGRLNWwstvCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMKsgaEREALKRRWRWQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 148 tellHSQEFTQTGLRYSTLNWEEEWVKIVEMASP---------------VSSSNGLQFDSLEDIHIFVLSNILRRPIIVI 212
Cdd:cd22773    81 ----QTQQNKESGLVYTEEEWEREWNELLKLASSeprthfsknggtgggVDNSEDPVYESLEEFHVFVLAHILRRPIVVV 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2326909430 213 ADQVLRSmKSGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLIT 264
Cdd:cd22773   157 ADTMLRD-SGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVS 207
OTU_ZRANB1 cd22767
OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins; ZRANB1 is ...
 75-263 6.40e-38

OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins; ZRANB1 is also called TRAF-binding domain-containing protein, Trabid, or zinc finger Ran-binding domain-containing protein 1. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin; it also cleaves 'Lys-63'-linked chains with less efficiency. ZRANB1 binds, deubiquitinates, and stabilizes EZH2, which is the catalytic component of the Polycomb repressive complex 2 (PRC2) that silences gene transcription by methylating histone H3 at lysine 27 and is mutated or highly expressed in many types of cancer, including lymphoma, melanoma, prostate cancer, ovarian cancer, and breast cancer. Drosophila Trabid interacts with TGF-beta Activating Kinase 1 (TAK1), which triggers both immunity and apoptosis, resulting in reduced immune signaling output and K63-linked ubiquitination. ZRANB1 belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. ZRANB1 does not contain the conserved aspartate, and uses cysteine and histidine as a catalytic dyad. It is classified as a family C64 cysteine protease by MEROPS.


Pssm-ID: 438604  Cd Length: 185  Bit Score: 139.74  E-value: 6.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  75 RAMQSSLEQEKR-LNWCREV-----KKLVPL--RTNGDgnCLLHAASQYLLGVQDTDLVLRKALYAVLKETDTSNFRTRF 146
Cdd:cd22767     1 RDVQKELEEESPiINWSLELtdrlgSRLYALwnRTAGD--CLLDSVLQATWGVFDRDNVLRRALADSLHDCAHWFYSRWK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 147 QTELLHSQEFtqtGLRYSTLNWEEEWVKIVEMASPVSSSnglqfdsLEDIHIFVLSNILRRPIIVIADQVLRSMKsGSSF 226
Cdd:cd22767    79 EYESWQAQSL---GYSLEEEQWQKDWAFLLSLASQPGAS-------LEQTHIFALAHILRRPIIVYGVKYVKSFR-GETL 147

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2326909430 227 SPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHFAPLI 263
Cdd:cd22767   148 GYARFQGVYLPLLWEQSFCWKSPIALGYTRGHFSALV 184
OTU pfam02338
OTU-like cysteine protease; This family is comprised of a group of predicted cysteine ...
 102-259 3.81e-30

OTU-like cysteine protease; This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases.


Pssm-ID: 426728 [Multi-domain]  Cd Length: 127  Bit Score: 115.24  E-value: 3.81e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 102 NGDGNCLLHAASQYLLGVQDtdlVLRKALYAVLKETDTSNFRtrfqtelLHSQEFTQTglrystlnWEEEWVKIVEMASP 181
Cdd:pfam02338   1 PGDGNCLYRSISHQLWGVHD---VLRKMLVQELRETLAEYMR-------EHKEEFEPF--------LEDDETGDIIEIEQ 62

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2326909430 182 VSSSNGlqfdsleDIHIFVLSNILRRPIIVIadqvlrSMKSGSSFSPLNVGGIYLPLHWPPGECYKYPIVLGYDSQHF 259
Cdd:pfam02338  63 TGAWGG-------EIEIFALAHILRRPIIVY------KSEGGEELGGLKEYGIYLPLGWDPSLCLVYPRHLYYLGGHY 127
OTU_VCIP135 cd22769
OTU (ovarian tumor) domain of deubiquitinating protein VCIP135; Deubiquitinating protein ...
 77-263 5.42e-18

OTU (ovarian tumor) domain of deubiquitinating protein VCIP135; Deubiquitinating protein VCIP135 is also called valosin-containing protein p97/p47 complex-interacting protein 1, valosin-containing protein p97/p47 complex-interacting protein p135, or VCP/p47 complex-interacting 135-kDa protein. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that hydrolyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitin chains. It is necessary for VCP-mediated reassembly of Golgi stacks after mitosis, and may play a role in VCP-mediated formation of transitional endoplasmic reticulum (tER). VCIP135 controls Golgi membrane dynamics in the cell cycle and is required for Golgi and ER assembly. It belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. Not all members of this subfamily contain the active site. It is closely related to proteins classified as family C64 cysteine protease by MEROPS, such as TNFAIP3, ZRANB1, and OTUD7A/B.


Pssm-ID: 438606  Cd Length: 197  Bit Score: 82.73  E-value: 5.42e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  77 MQSSLEQEKRLNWCREVkkLVPLRTNGDGNCLLHAASQYLLGvqdtdlvlRKALYAVLKEtdtsNFRTRFQTELLHSQEF 156
Cdd:cd22769    28 LHDTLEEIKKANDNEER--LIPIHADGDGHCLVHAVSRALVG--------RELFWHALRE----NLKQHFKENLDQYKAL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 157 TQTGLRystlnwEEEWVKIVEMASPVSSSNGLQFDSLEDIHIFVLSNILRRPIIVIaDQvLRSMKSGSSFSplnvgGIYL 236
Cdd:cd22769    94 FQDFID------DSEWPDIIAECDPDFVPPEGEPLGLRNIHIFGLANVLKRPIILL-DS-LSGMQSSGDYS-----AIFL 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2326909430 237 PLHWPPGEC------YKYPIVLGYDS---QHFAPLI 263
Cdd:cd22769   161 PGLVPPEKCrgkdglLNKPICIAWSSsgrNHFIPLV 196
OTU cd22744
OTU (ovarian tumor) domain family; The OTU family of cysteine proteases use a conserved ...
 103-262 8.08e-09

OTU (ovarian tumor) domain family; The OTU family of cysteine proteases use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. OTU domains typically function as deubiquitinases (DUBs)/ubiquitin thiolesterases (EC 3.4.19.12) that catalyze the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. These DUBs may play important regulatory roles at the level of protein turnover by preventing degradation.


Pssm-ID: 438581 [Multi-domain]  Cd Length: 128  Bit Score: 54.36  E-value: 8.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 103 GDGNCLLHAASQYLLGVQDTDLVLRKALYAVLKEtdtsnfrtrfqtellHSQEFTQtgLRYSTLNWEEEWVKIVE-MASP 181
Cdd:cd22744     7 GDGNCLFRALAHALYGDQESHRELRQEVVDYLRE---------------NPDLYEP--AELADEDDGEDFDEYLQrMRKP 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430 182 VSSSNglqfdsleDIHIFVLSNILRRPIIVIadqvlrsmksgssfsplNVGGIYLPLHW--PPGECYKYPIVLGYDS-QH 258
Cdd:cd22744    70 GTWGG--------ELELQALANALNVPIVVY-----------------SEDGGFLPVSVfgPGPGPSGRPIHLLYTGgNH 124


                  ....
gi 2326909430 259 FAPL 262
Cdd:cd22744   125 YDAL 128
OTU_VRTN cd22791
OTU (ovarian tumor) domain of vertnin and similar proteins; Vertnin (VRTN) is an OTU ...
 96-209 2.49e-04

OTU (ovarian tumor) domain of vertnin and similar proteins; Vertnin (VRTN) is an OTU domain-containing protein that is required for the development of thoracic vertebrae in mammals. OTU domains typically function as deubiquitinases (DUBs)/ubiquitin thiolesterases (EC 3.4.19.12) that catalyze the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. These DUBs may play important regulatory roles at the level of protein turnover by preventing degradation. Vertnin and some subfamily members do not possess the conserved catalytic residues and may not have DUB activity. VRTN gene is associated with variations in vertebral number.


Pssm-ID: 438612  Cd Length: 137  Bit Score: 41.82  E-value: 2.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2326909430  96 LVPLRTNGDGNCLLHAASQYLLGVQDtdlvlrkalYAVLketdtsnFRTRFQTEL-LHSQeftqtglRYSTLnWEEEwvk 174
Cdd:cd22791     1 LEPLRVTGDGNCLFRAASLLLFGDES---------LHLE-------LRLRTVLELvLNSE-------FYEAI-YEAE--- 53

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2326909430 175 IVEMASPVSSSNGlqfdsledIHIFVLSNILRRPI 209
Cdd:cd22791    54 IKATCKPGSYSGI--------WHIYALSSVLQRPI 80
ZnF_A20 smart00259
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ...
 464-488 5.68e-04

A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.


Pssm-ID: 128555  Cd Length: 26  Bit Score: 37.57  E-value: 5.68e-04
                           10        20
                   ....*....|....*....|....*
gi 2326909430  464 AMKCKTPGCLFTLSVEHDGLCERCF 488
Cdd:smart00259   1 PIKCRRPGCGFFGNPATEGLCSKCF 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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