|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
458-628 |
1.25e-40 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 149.00 E-value: 1.25e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 458 DMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYG 537
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 538 LGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK 617
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170
....*....|.
gi 2462559403 618 SALQELEELKQ 628
Cdd:COG0457 162 EALELLEKLEA 172
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
467-666 |
1.03e-37 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 141.79 E-value: 1.03e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 467 WCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQE 546
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 547 KFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEEL 626
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462559403 627 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 666
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
491-657 |
1.95e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 137.45 E-value: 1.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 491 IQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLC 570
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 571 HIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQT 650
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*..
gi 2462559403 651 HLALMNF 657
Cdd:COG0457 161 EEALELL 167
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
444-665 |
3.57e-36 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 137.55 E-value: 3.57e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 444 QKDVALSVLsKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRN 523
Cdd:COG2956 23 QPDKAIDLL-EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 524 AIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCK 603
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462559403 604 FHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDP 665
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
380-626 |
2.60e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 123.69 E-value: 2.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 380 EAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGM----EIYsttlwHLQKDV--ALSVLS 453
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALlelaQDY-----LKAGLLdrAEELLE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 454 KdLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYN 533
Cdd:COG2956 101 K-LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 534 AWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLcKFHRASVLFAN 613
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERK 258
|
250
....*....|...
gi 2462559403 614 EKYKSALQELEEL 626
Cdd:COG2956 259 EGLEAALALLERQ 271
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
394-626 |
7.63e-31 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 121.27 E-value: 7.63e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 394 NTGWVLCQIGRAYFELSEYMQAERIFSEVRRIenyrvegmeiysttlwhlqkdvalsvlskdltdmDKNSPEAWCAAGNC 473
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----------------------------------DPDDAEALYNLGLA 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 474 FSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEM 553
Cdd:COG0457 52 YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIE 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 554 HFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEEL 626
Cdd:COG0457 132 AYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
525-693 |
9.27e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 112.41 E-value: 9.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 525 IRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKF 604
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 605 HRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDD 684
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*....
gi 2462559403 685 EEPITQEEQ 693
Cdd:COG0457 161 EEALELLEK 169
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
396-654 |
1.61e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.52 E-value: 1.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 396 GWVLcqIGRAYFELSEYMQAERIFSEVRRIENYRVEgmeIYST--TLWHLQKDV--ALSVLSKdLTDMDKNSPEAWCAAG 471
Cdd:COG2956 10 GWYF--KGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLAlgNLYRRRGEYdrAIRIHQK-LLERDPDRAEALLELA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 472 NCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLA 551
Cdd:COG2956 84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 552 EMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVP 631
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
250 260
....*....|....*....|...
gi 2462559403 632 kESLVYFLIGKVYKKLGQTHLAL 654
Cdd:COG2956 244 -SDDLLLALADLLERKEGLEAAL 265
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
465-599 |
1.65e-26 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 105.27 E-value: 1.65e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 465 EAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYK 544
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462559403 545 QEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKN 599
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
477-629 |
3.90e-26 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 113.93 E-value: 3.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 477 QREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQ 556
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 557 KALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQI 629
Cdd:COG3914 171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
498-675 |
3.77e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 105.58 E-value: 3.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 498 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQH 577
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 578 ALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNF 657
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170
....*....|....*...
gi 2462559403 658 SWAMDLDPKGANNQIKEA 675
Cdd:COG2956 168 EKALKLDPDCARALLLLA 185
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
516-639 |
1.54e-22 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 93.53 E-value: 1.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 516 KALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI 595
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2462559403 596 DPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFL 639
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
462-566 |
3.09e-22 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 92.76 E-value: 3.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 462 NSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMI 541
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100
....*....|....*....|....*
gi 2462559403 542 YYKQEKFSLAEMHFQKALDINPQSS 566
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
498-633 |
5.36e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 92.56 E-value: 5.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 498 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQH 577
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559403 578 ALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKE 633
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
454-565 |
5.96e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 92.18 E-value: 5.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 454 KDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYN 533
Cdd:COG4783 28 EKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107
|
90 100 110
....*....|....*....|....*....|..
gi 2462559403 534 AWYGLGMIYYKQEKFSLAEMHFQKALDINPQS 565
Cdd:COG4783 108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
443-621 |
7.67e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 91.90 E-value: 7.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 443 LQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFR 522
Cdd:COG4785 52 ALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFD 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 523 NAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQS--SVLLCHIgvvQHALKKSEKALDTLNKAIvidPKNP 600
Cdd:COG4785 132 RALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDpeRALWLYL---AERKLDPEKALALLLEDW---ATAY 205
|
170 180
....*....|....*....|.
gi 2462559403 601 LCKFHRASvlfANEKYKSALQ 621
Cdd:COG4785 206 LLQGDTEE---ARELFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
362-596 |
1.23e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 92.48 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 362 LLREMGKGYLALCSYNckEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFsevrrienyrvegmeiysttlw 441
Cdd:COG2956 78 ALLELAQDYLKAGLLD--RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL---------------------- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 442 hlqkdvalsvlsKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACF 521
Cdd:COG2956 134 ------------ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL 201
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462559403 522 RNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLcHIGVVQHALKKSEKALDTLNKAIVID 596
Cdd:COG2956 202 ERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
534-666 |
1.46e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 88.33 E-value: 1.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 534 AWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFAN 613
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 614 EKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 666
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
483-600 |
1.98e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 87.75 E-value: 1.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 483 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDIN 562
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*...
gi 2462559403 563 PQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNP 600
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
372-572 |
6.87e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 94.29 E-value: 6.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 372 ALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYSTTLWHLQK----DV 447
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAlgryEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 448 ALSVLSKDLtDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRV 527
Cdd:COG3914 97 ALALYRRAL-ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2462559403 528 NPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHI 572
Cdd:COG3914 176 DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
488-640 |
1.47e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.13 E-value: 1.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 488 QRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSV 567
Cdd:COG3914 68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 568 LLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLI 640
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
473-563 |
1.16e-18 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 81.37 E-value: 1.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 473 CFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALAcFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAE 552
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 2462559403 553 MHFQKALDINP 563
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
469-563 |
1.53e-18 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 83.09 E-value: 1.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 469 AAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKF 548
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
90
....*....|....*
gi 2462559403 549 SLAEMHFQKALDINP 563
Cdd:COG5010 139 DEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
464-666 |
6.58e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.04 E-value: 6.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 464 PEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH---------YNA 534
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAaaaaallllAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 535 WYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANE 614
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462559403 615 KYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 666
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
442-597 |
1.86e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 77.31 E-value: 1.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 442 HLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHefvlteeLDKALACF 521
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD-------FEESLALL 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559403 522 RNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDP 597
Cdd:COG5010 78 EQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
477-709 |
7.42e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.67 E-value: 7.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 477 QREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGL------------------ 538
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALatilieagefeeaekhad 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 539 ----------------GMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLC 602
Cdd:TIGR02917 252 allkkapnsplahylkALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 603 KFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLP 682
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411
|
250 260
....*....|....*....|....*..
gi 2462559403 683 DDEEPITQEEQIMGTDesqeSSMTDAD 709
Cdd:TIGR02917 412 DPSEAIADLETAAQLD----PELGRAD 434
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
494-677 |
8.55e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 77.26 E-value: 8.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 494 DPNYAYAYTLLGHEFVLTEELDKALACFR------NAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSV 567
Cdd:COG4785 29 LLFAAVLALAIALADLALALAAAALAAAAlaaeriDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 568 LLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKL 647
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
|
170 180 190
....*....|....*....|....*....|....*
gi 2462559403 648 G-QTHLALMNFSWAMDL----DPKGANNQIKEAID 677
Cdd:COG4785 189 DpEKALALLLEDWATAYllqgDTEEARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
489-631 |
1.49e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 74.61 E-value: 1.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 489 RAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVL 568
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 569 LCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVP 631
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
541-632 |
4.09e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.35 E-value: 4.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 541 IYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDtLNKAIVIDPKNPLCKFHRASVLFANEKYKSAL 620
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2462559403 621 QELEELKQIVPK 632
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
397-531 |
5.22e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.53 E-value: 5.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 397 WVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYSTTLWHLQK-DVALSVLsKDLTDMDKNSPEAWCAAGNCFS 475
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLL-HEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462559403 476 LQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH 531
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
345-568 |
2.91e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.57 E-value: 2.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 345 QIQAFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLpshhyntgwvlcqiGRAYFELSEYMQAERIFSEVRR 424
Cdd:COG3914 41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA--------------ALLLQALGRYEEALALYRRALA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 425 IENYRVEGMEIYSTTLWHLQKDV-ALSVLSKdLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTL 503
Cdd:COG3914 107 LNPDNAEALFNLGNLLLALGRLEeALAALRR-ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462559403 504 LGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVL 568
Cdd:COG3914 186 LGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
401-666 |
3.37e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 3.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 401 QIGRAYFELSEYMQAERifsEVRRIE--NYRVEGMEIYSTTLWHLQK--DVALSVLSKDLTDMDKNSPEAWCAAGNCFSL 476
Cdd:TIGR02917 61 LLGKIYLALGDYAAAEK---ELRKALslGYPKNQVLPLLARAYLLQGkfQQVLDELPGKTLLDDEGAAELLALRGLAYLG 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 477 QREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQ 556
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 557 KALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLV 636
Cdd:TIGR02917 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297
|
250 260 270
....*....|....*....|....*....|
gi 2462559403 637 YFLIGKVYKKLGQTHLALMNFSWAMDLDPK 666
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPN 327
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
483-672 |
7.88e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 7.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 483 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDIN 562
Cdd:TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 563 PQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGK 642
Cdd:TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711
|
170 180 190
....*....|....*....|....*....|
gi 2462559403 643 VYKKLGQTHLALMNFSWAMDLDPkgaNNQI 672
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAP---SSQN 738
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
448-686 |
4.90e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.81 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 448 ALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLT-------EELDKALAC 520
Cdd:TIGR02917 6 ALLCIALALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALgdyaaaeKELRKALSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 521 FRNAIRVNPrhynawyGLGMIYYKQEKFS--LAEMHFQKALDiNPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPK 598
Cdd:TIGR02917 86 GYPKNQVLP-------LLARAYLLQGKFQqvLDELPGKTLLD-DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 599 NPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDK 678
Cdd:TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATIL 237
|
....*...
gi 2462559403 679 RYLPDDEE 686
Cdd:TIGR02917 238 IEAGEFEE 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
403-666 |
4.88e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.34 E-value: 4.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 403 GRAYFELSEYMQAERIFSE-VRRIENYRVEGMEIYSTTLWHLQKDVALSVLSkDLTDMDKNSPEAWCAAGNCFSLQREHD 481
Cdd:TIGR02917 302 GASEYQLGNLEQAYQYLNQiLKYAPNSHQARRLLASIQLRLGRVDEAIATLS-PALGLDPDDPAALSLLGEAYLALGDFE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 482 IAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAeMHFQKALDI 561
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA-LAAAKKLEK 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 562 N-PQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLI 640
Cdd:TIGR02917 460 KqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539
|
250 260
....*....|....*....|....*.
gi 2462559403 641 GKVYKKLGQTHLALMNFSWAMDLDPK 666
Cdd:TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQ 565
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
380-592 |
4.12e-11 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 64.93 E-value: 4.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 380 EAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYSTTLW-HLQKDVA-----LSVLS 453
Cdd:COG3071 103 QALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYlGLLRQAArdaeaLKALW 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 454 KDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQV--DPNYAYAYTLLghefvLTEELDKALACFRNAIRVNPRH 531
Cdd:COG3071 183 KALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRqwDPRLVRLYGRL-----QGGDPAKQLKRAEKWLKKHPND 257
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462559403 532 YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLcHIGVVQHALKKSEKALDTLNKA 592
Cdd:COG3071 258 PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYA-ELARLLEQLGDPEEAAEHYRKA 317
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
515-600 |
8.32e-11 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 59.62 E-value: 8.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 515 DKALACFRNAIRVNPRHY---NAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVL---LCHIGVVQHALKKSEKALDT 588
Cdd:COG1729 10 DEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARAT 89
|
90
....*....|..
gi 2462559403 589 LNKAIVIDPKNP 600
Cdd:COG1729 90 LEELIKKYPDSE 101
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
574-665 |
9.47e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 9.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 574 VVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLA 653
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
90
....*....|..
gi 2462559403 654 LMNFSWAMDLDP 665
Cdd:COG5010 142 KAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
575-666 |
1.69e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 575 VQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQeLEELKQIVPKESLVYFLIGKVYKKLGQTHLAL 654
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2462559403 655 MNFSWAMDLDPK 666
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
347-626 |
3.77e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 347 QAFNLQKAAAEGLMSL---LREMGKGYLALCSYncKEAINILSHLPSHHYNTGWVLCQIGRayfelseymqaerifsevr 423
Cdd:COG0457 33 KALELDPDDAEALYNLglaYLRLGRYEEALADY--EQALELDPDDAEALNNLGLALQALGR------------------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 424 rienyrvegmeiysttlwhlqkdvalsvlskdltdmdknspeawcaagncfslqreHDIAIKFFQRAIQVDPNYAYAYTL 503
Cdd:COG0457 92 --------------------------------------------------------YEEALEDYDKALELDPDDAEALYN 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 504 LGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSE 583
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2462559403 584 KALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEEL 626
Cdd:COG0457 196 LLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
477-566 |
4.47e-10 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 57.69 E-value: 4.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 477 QREHDIAIKFFQRAIQVDPNYAY---AYTLLGHEFVLTEELDKALACFRNAIRVNPRHY---NAWYGLGMIYYKQEKFSL 550
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
90
....*....|....*.
gi 2462559403 551 AEMHFQKALDINPQSS 566
Cdd:COG1729 86 ARATLEELIKKYPDSE 101
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
562-701 |
8.86e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 8.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 562 NPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIG 641
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 642 KVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQ 701
Cdd:COG4785 149 IALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQ 208
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
460-532 |
1.15e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 1.15e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 460 DKNSPEAWCAAGNCFSLQREHDIAIKFfQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHY 532
Cdd:COG3063 22 DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
448-636 |
2.13e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 448 ALSVLsKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRV 527
Cdd:TIGR02917 586 ALAIL-NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 528 NPRHYNAWYGL----------------------------------GMIYYKQEKFSLAEMHFQKALDINPqSSVLLCHIG 573
Cdd:TIGR02917 665 KPDNTEAQIGLaqlllaakrtesakkiakslqkqhpkaalgfeleGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLH 743
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 574 VVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLV 636
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
532-564 |
3.38e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 49.73 E-value: 3.38e-08
10 20 30
....*....|....*....|....*....|...
gi 2462559403 532 YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQ 564
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
479-594 |
4.30e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 55.33 E-value: 4.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 479 EHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH-YNAWYGLGMIYYKQEkfSLAemHFQK 557
Cdd:cd24142 15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQLSGGEE--ALQ--YYEK 90
|
90 100 110
....*....|....*....|....*....|....*..
gi 2462559403 558 ALDInpqssvLLCHIGVVQHALKKSEKALDTLNKAIV 594
Cdd:cd24142 91 GIEI------LEEELQALQAASAEAEEEAEELKRKLS 121
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
533-593 |
1.19e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 49.31 E-value: 1.19e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462559403 533 NAWYGLGMIYYKQEKFSLAEMHFQKALDI--------NPQSSVLLCHIGVVQHALKKSEKALDTLNKAI 593
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
494-627 |
1.35e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.09 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 494 DPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQeKFSLAEMHFQKALDINPQSSVLLCHIG 573
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLG 844
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2462559403 574 VVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELK 627
Cdd:TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
532-564 |
1.64e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 47.83 E-value: 1.64e-07
10 20 30
....*....|....*....|....*....|...
gi 2462559403 532 YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQ 564
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
503-566 |
6.11e-07 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 47.33 E-value: 6.11e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462559403 503 LLGHEFVLTEELDKALACFRNAIRVN---PRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSS 566
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
464-497 |
2.17e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.72 E-value: 2.17e-06
10 20 30
....*....|....*....|....*....|....
gi 2462559403 464 PEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY 497
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
404-630 |
3.14e-06 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 50.19 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 404 RAYFELSE-YMQ------AERIFSEVRRIENYRVEG----MEIY-STTLWhlQK--DVALSVLSKDLTDMDKNSPEAWCA 469
Cdd:PRK11788 108 LALQELGQdYLKaglldrAEELFLQLVDEGDFAEGAlqqlLEIYqQEKDW--QKaiDVAERLEKLGGDSLRVEIAHFYCE 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 470 AGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHynawygLGMI-------Y 542
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY------LSEVlpklmecY 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 543 YKQEKFSLAEMHFQKALDINPQSSVLLChigVVQHALKK--SEKALDTLNKAIvidPKNP-LCKFHR---ASVLFANEky 616
Cdd:PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLA---LAQLLEEQegPEAAQALLREQL---RRHPsLRGFHRlldYHLAEAEE-- 331
|
250
....*....|....
gi 2462559403 617 KSALQELEELKQIV 630
Cdd:PRK11788 332 GRAKESLLLLRDLV 345
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
540-632 |
3.22e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 540 MIYYKQEKFSLAEMHFQKALDINPQSSVL---LCHIGVVQHALKKSEKALDTLNKAIVIDPKNPL---CKFHRASVLFAN 613
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90
....*....|....*....
gi 2462559403 614 EKYKSALQELEELKQIVPK 632
Cdd:COG1729 81 GDYDKARATLEELIKKYPD 99
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
498-564 |
3.78e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 3.78e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462559403 498 AYAYTLLGHEFVLTEELDKALACFRNAIRV-----NPRH---YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQ 564
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
505-545 |
9.14e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.84 E-value: 9.14e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2462559403 505 GHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQ 545
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
459-625 |
1.62e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.06 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 459 MDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGL 538
Cdd:TIGR00990 394 LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYY 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 539 GMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIG-VVQHALKKSE------KALDTLNKAIVIDPKNPLCKFHRASVLF 611
Cdd:TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLpLINKALALFQwkqdfiEAENLCEKALIIDPECDIAVATMAQLLL 553
|
170
....*....|....
gi 2462559403 612 ANEKYKSALQELEE 625
Cdd:TIGR00990 554 QQGDVDEALKLFER 567
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
464-497 |
1.64e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.05 E-value: 1.64e-05
10 20 30
....*....|....*....|....*....|....
gi 2462559403 464 PEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY 497
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
396-503 |
7.04e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 7.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 396 GWVLcqIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFS 475
Cdd:COG4235 19 GWLL--LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|....*...
gi 2462559403 476 LQREHDIAIKFFQRAIQVDPNYAYAYTL 503
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
498-531 |
1.12e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 1.12e-04
10 20 30
....*....|....*....|....*....|....
gi 2462559403 498 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH 531
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
534-564 |
1.60e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.43 E-value: 1.60e-04
10 20 30
....*....|....*....|....*....|.
gi 2462559403 534 AWYGLGMIYYKQEKFSLAEMHFQKALDINPQ 564
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
584-694 |
1.67e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 584 KALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDL 663
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462559403 664 DPKGA------------NNQIKEAID--KRYL---PDDEEPITQEEQI 694
Cdd:COG4235 81 DPDNPealyllglaafqQGDYAEAIAawQKLLallPADAPARLLEASI 128
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
498-531 |
2.75e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 2.75e-04
10 20 30
....*....|....*....|....*....|....
gi 2462559403 498 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH 531
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
446-525 |
2.91e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 446 DVALSVLSKDLtDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYA-YTLLGHefvLTEELDkALACFRNA 524
Cdd:cd24142 17 ELALKFLQRAL-ELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLGQ---LSGGEE-ALQYYEKG 91
|
.
gi 2462559403 525 I 525
Cdd:cd24142 92 I 92
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
351-526 |
3.19e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 43.36 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 351 LQKAAA---EGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRien 427
Cdd:COG3071 145 LRKHKAlsaEEAQALERRAYLGLLRQAARDAEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALK--- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 428 yrvegmEIYSTTLWHLQKDVALSVLSKDLTDMDK------NSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNyAYAY 501
Cdd:COG3071 222 ------RQWDPRLVRLYGRLQGGDPAKQLKRAEKwlkkhpNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAY 294
|
170 180
....*....|....*....|....*
gi 2462559403 502 TLLGHEFVLTEELDKALACFRNAIR 526
Cdd:COG3071 295 AELARLLEQLGDPEEAAEHYRKALA 319
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
483-666 |
3.95e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.82 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 483 AIKFFQRAI---QVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKAL 559
Cdd:TIGR00990 313 AARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 560 DINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFL 639
Cdd:TIGR00990 393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY 472
|
170 180
....*....|....*....|....*..
gi 2462559403 640 IGKVYKKLGQTHLALMNFSWAMDLDPK 666
Cdd:TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKE 499
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
580-678 |
4.19e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 580 KKSEKALDTLNKAIVIDPKNPL---CKFHRASVLFANEKYKSALQELEELKQIVPKESLV---YFLIGKVYKKLGQTHLA 653
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKA 86
|
90 100
....*....|....*....|....*.
gi 2462559403 654 LMNFSWAMDLDPKG-ANNQIKEAIDK 678
Cdd:COG1729 87 RATLEELIKKYPDSeAAKEARARLAR 112
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
532-564 |
4.52e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 38.15 E-value: 4.52e-04
10 20 30
....*....|....*....|....*....|...
gi 2462559403 532 YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQ 564
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
546-665 |
5.81e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.05 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 546 EKFSLAEMHFQKALDIN---PQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQE 622
Cdd:TIGR00990 308 ESYEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2462559403 623 LEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDP 665
Cdd:TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
538-650 |
5.81e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.18 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 538 LGMIYYKQEKFSLAEMHFQKAL-DINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNplcKFHRASVLFANeky 616
Cdd:COG4700 95 LADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDF---KSSDAHLLYAR--- 168
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2462559403 617 ksALQEL-------EELKQIV-----PKESLVYfliGKVYKKLGQT 650
Cdd:COG4700 169 --ALEALgdleaaeAELEALArrysgPEARYRY---AKFLARQGRT 209
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
539-654 |
5.91e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 42.59 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 539 GMIYYKQEKFSLAEMHFQKALDINPQSsvLLCHIGVVQ--HALKKSEKALDTLNKAIVIDPKNPL-CKFHRASVLFANEK 615
Cdd:COG3071 23 GLLALAEGRYARAEKLLSKAAEHSEAP--LLAYLLAARaaQALGDYERRDEYLAQALELAPEAELaVLLTRAELLLDQGQ 100
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462559403 616 YKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLAL 654
Cdd:COG3071 101 AEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL 139
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
464-496 |
1.19e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 1.19e-03
10 20 30
....*....|....*....|....*....|...
gi 2462559403 464 PEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPN 496
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
569-599 |
1.48e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.48e-03
10 20 30
....*....|....*....|....*....|.
gi 2462559403 569 LCHIGVVQHALKKSEKALDTLNKAIVIDPKN 599
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
609-698 |
2.74e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 609 VLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPI 688
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|
gi 2462559403 689 TQEEQIMGTD 698
Cdd:COG5010 143 AALQRALGTS 152
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
512-564 |
3.51e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 36.81 E-value: 3.51e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2462559403 512 EELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQ 564
Cdd:pfam13371 9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPD 61
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
569-599 |
4.72e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 4.72e-03
10 20 30
....*....|....*....|....*....|.
gi 2462559403 569 LCHIGVVQHALKKSEKALDTLNKAIVIDPKN 599
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
471-506 |
6.34e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.14 E-value: 6.34e-03
10 20 30
....*....|....*....|....*....|....*.
gi 2462559403 471 GNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGH 506
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
477-558 |
6.49e-03 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 36.08 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 477 QREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRvNPRHYNAWYGLGMIYYKQEKFSLAEMHFQ 556
Cdd:pfam12895 2 QHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKL-NGSSLGCRYLFAQCLLKLKKYDEALDALG 80
|
..
gi 2462559403 557 KA 558
Cdd:pfam12895 81 KA 82
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
405-496 |
8.77e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462559403 405 AYFELSEYMQAERIFSEVRRIENYRVEGMEIYSTTLWHLQKDVALSVLSKDLtDMDKNSPEAWCAAGNCFSLQREHDIAI 484
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKAL-KLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 2462559403 485 KFFQRAIQVDPN 496
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
483-545 |
9.21e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 38.71 E-value: 9.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462559403 483 AIKFFQraiQVDPNY-------------AYAYTLLGhefvlteELDKALACFRNAIRVNPRHYN---AWYGLGMIYYKQ 545
Cdd:COG4105 51 AIKLFE---ELEPRYpgspyaeqaqlmlAYAYYKQG-------DYEEAIAAADRFIKLYPNSPNadyAYYLRGLSYYEQ 119
|
|
| |
