NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2462509383|ref|XP_054192670|]
View 

keratinocyte proline-rich protein isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 250-534 5.63e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 5.63e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  250 RSTSRCLPPP-RRLQLFPRSCSPPRRFEP---CSSSYLPLRPSEGFPNYCTPPRRSEPIynsrcPRRPISSCSQRRGPKC 325
Cdd:PHA03247  2682 RPRRRAARPTvGSLTSLADPPPPPPTPEPaphALVSATPLPPGPAAARQASPALPAAPA-----PPAVPAGPATPGGPAR 2756

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  326 RIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPSWGASCPELR-PHVEPRPLPSFCPPRRLDQCPESPL----QRCP 400
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLppptSAQP 2836

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  401 PPAPRPRLRPEPSISLE-----------------------PRPRPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEI 457
Cdd:PHA03247  2837 TAPPPPPGPPPPSLPLGgsvapggdvrrrppsrspaakpaAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462509383  458 PEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGC--HESSPHRLDTEAPYCGPSS 534
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVprFRVPQPAPSREAPASSTPP 2995
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 250-534 5.63e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 5.63e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  250 RSTSRCLPPP-RRLQLFPRSCSPPRRFEP---CSSSYLPLRPSEGFPNYCTPPRRSEPIynsrcPRRPISSCSQRRGPKC 325
Cdd:PHA03247  2682 RPRRRAARPTvGSLTSLADPPPPPPTPEPaphALVSATPLPPGPAAARQASPALPAAPA-----PPAVPAGPATPGGPAR 2756

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  326 RIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPSWGASCPELR-PHVEPRPLPSFCPPRRLDQCPESPL----QRCP 400
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLppptSAQP 2836

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  401 PPAPRPRLRPEPSISLE-----------------------PRPRPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEI 457
Cdd:PHA03247  2837 TAPPPPPGPPPPSLPLGgsvapggdvrrrppsrspaakpaAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462509383  458 PEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGC--HESSPHRLDTEAPYCGPSS 534
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVprFRVPQPAPSREAPASSTPP 2995
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 434-497 1.03e-07

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 50.95  E-value: 1.03e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462509383 434 PEPLPALRPTPRPVPLPRPGqceiPEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRS 497
Cdd:pfam05887  59 PEPEPEPEPEPEPEPEPEPE----PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPGAATLKS 118
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 450-490 7.69e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 52.26  E-value: 7.69e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2462509383 450 PRPGQCEIPEPRPclQPceHPEPCPRPEPIPLPAPCPSPEP 490
Cdd:NF033845  546 PTPGPPVDPEPSP--EP--EPEPTPDPEPSPDPDPEPSPDP 582
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 458-506 8.28e-06

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 48.79  E-value: 8.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2462509383 458 PEPRPclqPCEhPEPCPRPEPIPLPAPCPSPEPcretwrSPSPCWGPNP 506
Cdd:NF033845  546 PTPGP---PVD-PEPSPEPEPEPTPDPEPSPDP------DPEPSPDPDP 584
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 442-486 1.72e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 48.02  E-value: 1.72e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2462509383 442 PTPRPVPLPRPGqceiPEPRPclQPCEHPEPCPRPEPIPLPAPCP 486
Cdd:NF033845  546 PTPGPPVDPEPS----PEPEP--EPTPDPEPSPDPDPEPSPDPDP 584
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 250-534 5.63e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 5.63e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  250 RSTSRCLPPP-RRLQLFPRSCSPPRRFEP---CSSSYLPLRPSEGFPNYCTPPRRSEPIynsrcPRRPISSCSQRRGPKC 325
Cdd:PHA03247  2682 RPRRRAARPTvGSLTSLADPPPPPPTPEPaphALVSATPLPPGPAAARQASPALPAAPA-----PPAVPAGPATPGGPAR 2756

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  326 RIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPSWGASCPELR-PHVEPRPLPSFCPPRRLDQCPESPL----QRCP 400
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLppptSAQP 2836

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  401 PPAPRPRLRPEPSISLE-----------------------PRPRPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEI 457
Cdd:PHA03247  2837 TAPPPPPGPPPPSLPLGgsvapggdvrrrppsrspaakpaAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462509383  458 PEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGC--HESSPHRLDTEAPYCGPSS 534
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVprFRVPQPAPSREAPASSTPP 2995
PHA03247 PHA03247
large tegument protein UL36; Provisional
 211-510 9.57e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.33  E-value: 9.57e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  211 RPSYSSCFPQYRSRTSFSPCVPQCQTQGSYGSFTEQHRSRSTSRCLPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPS-- 288
Cdd:PHA03247  2610 GPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAar 2689

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  289 ------EGFPNYCTPPRRSEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPrqvPPQRCPV----EIPPIRRRSQSCG 358
Cdd:PHA03247  2690 ptvgslTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP---AVPAGPAtpggPARPARPPTTAGP 2766

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  359 PQPSWGASCPELRPHVEPRP-LPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPSISLEPRPRPLPRQLSEPCLYPEPL 437
Cdd:PHA03247  2767 PAPAPPAAPAAGPPRRLTRPaVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP 2846

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  438 P---------------ALRPTPRPVPL-----PRPGQCEIPEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRS 497
Cdd:PHA03247  2847 PpslplggsvapggdvRRRPPSRSPAAkpaapARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

                          330
                   ....*....|...
gi 2462509383  498 PSPCWGPNPVPYP 510
Cdd:PHA03247  2927 PQPQPPPPPPPRP 2939
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 434-497 1.03e-07

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 50.95  E-value: 1.03e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462509383 434 PEPLPALRPTPRPVPLPRPGqceiPEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRS 497
Cdd:pfam05887  59 PEPEPEPEPEPEPEPEPEPE----PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPGAATLKS 118
PHA03247 PHA03247
large tegument protein UL36; Provisional
 245-555 1.83e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.56  E-value: 1.83e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  245 EQHRSRSTSRCLPPPRR---LQLFPRSCSPPRRFEPcSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRCPRRPISSCSQRR 321
Cdd:PHA03247  2650 ERPRDDPAPGRVSRPRRarrLGRAAQASSPPQRPRR-RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  322 GPKCRIEISSPCCPrqvPPQRCPV----EIPPIRRRSQSCGPQPSWGASCPELRPHVEPRP-LPSFCPPRRLDQCPESPL 396
Cdd:PHA03247  2729 RQASPALPAAPAPP---AVPAGPAtpggPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPaVASLSESRESLPSPWDPA 2805

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  397 QRCPPPAPRPRLRPEPSISLEPRPRPLPRQLSEPCLYPEPLP---------------ALRPTPRPvPLPRPGQCEIPEPR 461
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPpslplggsvapggdvRRRPPSRS-PAAKPAAPARPPVR 2884

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  462 PCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYPGDLGCHESSPHRLDTEAPYCGPSSYNQGQES 541
Cdd:PHA03247  2885 RLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964

                          330
                   ....*....|....
gi 2462509383  542 GAgCGPGDVFPERR 555
Cdd:PHA03247  2965 GA-LVPGRVAVPRF 2977
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 450-490 7.69e-07

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 52.26  E-value: 7.69e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2462509383 450 PRPGQCEIPEPRPclQPceHPEPCPRPEPIPLPAPCPSPEP 490
Cdd:NF033845  546 PTPGPPVDPEPSP--EP--EPEPTPDPEPSPDPDPEPSPDP 582
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 428-482 2.32e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 47.09  E-value: 2.32e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2462509383 428 SEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIPLP 482
Cdd:pfam05887  57 TDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 458-511 2.58e-06

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 47.09  E-value: 2.58e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2462509383 458 PEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYPG 511
Cdd:pfam05887  59 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPG 112
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 458-506 8.28e-06

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 48.79  E-value: 8.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2462509383 458 PEPRPclqPCEhPEPCPRPEPIPLPAPCPSPEPcretwrSPSPCWGPNP 506
Cdd:NF033845  546 PTPGP---PVD-PEPSPEPEPEPTPDPEPSPDP------DPEPSPDPDP 584
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 442-486 1.72e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 48.02  E-value: 1.72e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2462509383 442 PTPRPVPLPRPGqceiPEPRPclQPCEHPEPCPRPEPIPLPAPCP 486
Cdd:NF033845  546 PTPGPPVDPEPS----PEPEP--EPTPDPEPSPDPDPEPSPDPDP 584
PHA03247 PHA03247
large tegument protein UL36; Provisional
 266-522 2.30e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  266 PRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRCPrrPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPV 345
Cdd:PHA03247  2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP--PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  346 E---IP--PIRRRsqscgPQPSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPpaprprlrpepsislePRP 420
Cdd:PHA03247  2853 GgsvAPggDVRRR-----PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP----------------PQP 2911

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  421 RPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIPLPAP---CPSPEPCRETWRS 497
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrfrVPQPAPSREAPAS 2991

                          250       260
                   ....*....|....*....|....*....
gi 2462509383  498 PSPCWGPNPVP----YPGDLGCHESSPHR 522
Cdd:PHA03247  2992 STPPLTGHSLSrvssWASSLALHEETDPP 3020
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 271-524 2.51e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 47.38  E-value: 2.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 271 PPRRFEPCSSSYLPLRPSegFPNYCTPPRRSEPIYNSRCPRRPiSSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPI 350
Cdd:PTZ00449  563 PAKEHKPSKIPTLSKKPE--FPKDPKHPKDPEEPKKPKRPRSA-QRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPP 639

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 351 RRRSQscgPQPSWGASCPElRPHVEPRPLPSFCPPRRlDQCPESPLQRCPPPAPRPRLRPEPSISLEPRPRPLPRQLSEP 430
Cdd:PTZ00449  640 QRPSS---PERPEGPKIIK-SPKPPKSPKPPFDPKFK-EKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTP 714

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 431 CLYPEPLPALRPTPRPVPLPRPGQCEIPEPRP---CLQPCE-----HPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCW 502
Cdd:PTZ00449  715 FTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDiefFTPPEEertffHETPADTPLPDILAEEFKEEDIHAETGEPDEAMK 794

                         250       260
                  ....*....|....*....|....*..
gi 2462509383 503 GP-NPVPY-PGDLGCHESSP---HRLD 524
Cdd:PTZ00449  795 RPdSPSEHeDKPPGDHPSLPkkrHRLD 821
PHA03247 PHA03247
large tegument protein UL36; Provisional
 277-508 4.94e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 4.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  277 PCSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRC--PRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRS 354
Cdd:PHA03247  2554 PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRArrPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSP 2633

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  355 Q-SCGPQPSWGASCPELRPHVEPRPlPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPSISLEPRPRPLPrqlsepcly 433
Cdd:PHA03247  2634 AaNEPDPHPPPTVPPPERPRDDPAP-GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP--------- 2703

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462509383  434 PEPLPALRPTPRPVPLPRPgqceipePRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVP 508
Cdd:PHA03247  2704 PPPTPEPAPHALVSATPLP-------PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771
PRK11633 PRK11633
cell division protein DedD; Provisional
 417-488 5.29e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.91  E-value: 5.29e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462509383 417 EPRPRPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIPLPAPCPSP 488
Cdd:PRK11633   74 AVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145
PRK10819 PRK10819
transport protein TonB; Provisional
 435-500 9.85e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.21  E-value: 9.85e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462509383 435 EPLPALRPTPRPVPLPRPGQCEIPEPrpclqPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSP 500
Cdd:PRK10819   59 EPPQAVQPPPEPVVEPEPEPEPIPEP-----PKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 465-510 2.06e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 38.62  E-value: 2.06e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2462509383 465 QPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYP 510
Cdd:pfam05887  58 DPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 103
PHA03247 PHA03247
large tegument protein UL36; Provisional
 256-507 2.16e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 2.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  256 LPPPRRLQLFPRSCSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRCPRRPISSCSQ-RRGPKCRIEISSPCC 334
Cdd:PHA03247  2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvRRRPPSRSPAAKPAA 2877

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  335 PRQVPPQRCPVeiPPIRRRSQSCG------PQPSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRL 408
Cdd:PHA03247  2878 PARPPVRRLAR--PAVSRSTESFAlppdqpERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383  409 RPEPSI----SLEPRPRPLPRQLSEPCLYPEPLPALR-PTPRPVPLPRPGQC-------EIPEPRPC-----LQP----- 466
Cdd:PHA03247  2956 SGAVPQpwlgALVPGRVAVPRFRVPQPAPSREAPASStPPLTGHSLSRVSSWasslalhEETDPPPVslkqtLWPpddte 3035

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2462509383  467 ----------------CEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPV 507
Cdd:PHA03247  3036 dsdadslfdsdsersdLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPL 3092
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
454-490 2.99e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 40.42  E-value: 2.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2462509383 454 QCEIPEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEP 490
Cdd:PRK14960  406 QPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 442
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 417-462 3.26e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 38.23  E-value: 3.26e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2462509383 417 EPRPRPLPRQLSEPCLYPEPLPALRPTPRPVPLPRPGQCEIPEPRP 462
Cdd:pfam05887  66 EPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
352-514 3.51e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 3.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 352 RRSQSCGPQPSWGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPSISLEPRPRPLPRQLSEPc 431
Cdd:PRK12323  364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR- 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 432 lypEPLPALRPTPRPVPLPRPGQceipePRPCLQPCEHPEPCPRPEPIPLPAPCPSPEPCRETWRSPSPCWGPNPVPYPG 511
Cdd:PRK12323  443 ---GPGGAPAPAPAPAAAPAAAA-----RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP 514


                  ...
gi 2462509383 512 DLG 514
Cdd:PRK12323  515 DAA 517
PHA03378 PHA03378
EBNA-3B; Provisional
 322-510 3.77e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.44  E-value: 3.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 322 GPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQpswGASCPELRPHVEPRPLPSfcpprRLDQCPESPLQRCPP 401
Cdd:PHA03378  608 PPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVL---VFPTPHQPPQVEITPYKP-----TWTQIGHIPYQPSPT 679

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 402 PAPRPRLRPEPSISLEPRPRPlPRQLSEPCLYPEPL--PALRPTPRPVPLPRPGQCEIPE--PRPCLQPCEHPEPCPRPE 477
Cdd:PHA03378  680 GANTMLPIQWAPGTMQPPPRA-PTPMRPPAAPPGRAqrPAAATGRARPPAAAPGRARPPAaaPGRARPPAAAPGRARPPA 758

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2462509383 478 PIPLPAPCPSPEPCRETwRSPSPCWGPNPVPYP 510
Cdd:PHA03378  759 AAPGRARPPAAAPGAPT-PQPPPQAPPAPQQRP 790
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
436-487 4.00e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 40.03  E-value: 4.00e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2462509383 436 PLPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIPLPAPCPS 487
Cdd:PRK14960  394 PVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPN 445
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
458-490 5.22e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 39.65  E-value: 5.22e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2462509383 458 PEPRPCLQPCEHPEPCPRPEPIPLPAPCPSPEP 490
Cdd:PRK14960  412 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
283-488 6.80e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 6.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 283 LPLRPSEGFPNYCTPPRRSEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPS 362
Cdd:PRK12323  361 LAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQAS 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462509383 363 WGASCPELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPSISLEPRP-RPLPRQLSEPCLYP-EPLPAL 440
Cdd:PRK12323  441 ARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPwEELPPEFASPAPAQpDAAPAG 520

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2462509383 441 RPTPrpvPLPRPGQCEIPEPRPCLQPCEHPEPCPRPEPIPLPAPCPSP 488
Cdd:PRK12323  521 WVAE---SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 418-482 9.75e-03

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 38.92  E-value: 9.75e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462509383 418 PRPRPLPRQLSEPCLYPEP--LPALRPTPRPVPLPRPGQCEIPEPRPCLQPCEHP----EPCPRPEPIPLP 482
Cdd:pfam05616 326 PRPDLTPASAEAPHAQPLPevSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPdtdgQPGTRPDSPAVP 396
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH