|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
2.23e-23 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 100.63 E-value: 2.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 89 KKLTKQDNLALIKSL-------NlslskdggkKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 162 IEGIENMCNLQKLNLAGNEIEhipvwLGKKL-----------KSLRVLNLKGNKISSLQDISKLKPLQDLI--------- 221
Cdd:cd21340 83 VEGLENLTNLEELHIENQRLP-----PGEKLtfdprslaalsNSLRVLNISGNNIDSLEPLAPLRNLEQLDasnnqisdl 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 222 --------------SLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 158 eelldllsswpslrELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1321-2135 |
3.15e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.61 E-value: 3.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1321 RASKRQSEKEMEELHHN---IDDLLQEkksLECEVEELHRTVQKRQQQKDfidgnVESLMTELEIEKSLKHHEDIVDEIE 1397
Cdd:TIGR02168 171 KERRKETERKLERTRENldrLEDILNE---LERQLKSLERQAEKAERYKE-----LKAELRELELALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1398 CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQ 1477
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1478 ADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRAEL 1557
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEE-------KLEELKEELESLEAELEELEAELEELESR-------LEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1558 EKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA-LRLGETEVTEKCNHIREVKSLLEELSFQKGELNV 1636
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1637 QISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQlENHELQGLKLQHDQRVSELEKTQVAVLEEKLELE 1716
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-NQSGLSGILGVLSELISVDEGYEAAIEAALGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1717 nlQQI----SQQQKGEIEWQKQ----------LLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1782
Cdd:TIGR02168 548 --QAVvvenLNAAKKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1783 RV---LAAAEENSKMEQSNL--------------------EKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1839
Cdd:TIGR02168 626 LVvddLDNALELAKKLRPGYrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1840 AVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLV 1919
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1920 QQEMMFQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKvlaaeervrtlqeeerwCESLEKTLSQTK 1999
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALD-----------ELRAELTLLNEEAANLRER-----------------LESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2000 RQLSEREQQLVEKSGELLALQKEadsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnlLMANQKDLERRQM 2079
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEE--LSEELRELESKRS 911
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 2080 EISDAMRTLKSEVKD------EIRTSLKNLNQFLPELPAD-LEAILERNENLEGELESLKENL 2135
Cdd:TIGR02168 912 ELRRELEELREKLAQlelrleGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
435-1033 |
2.44e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.32 E-value: 2.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ-LKKEALDLELQMEKQKQEIAGKQKEIKDLQI 513
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYeLLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 514 AIDSLDSkdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEgvi 593
Cdd:COG1196 324 ELAELEE---ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE--- 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 594 sgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQhevnaslQQTQ 673
Cdd:COG1196 398 --LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL-------LAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 674 GDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHL 753
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 754 QDDNNLLKQQLKDFQNHLNHVVDGLV--RPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKW 831
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 832 ERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQ 911
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 912 LQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATA---ELTIAKDQLKSLhGTVmkiNQ 988
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEElerELERLEREIEAL-GPV---NL 784
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 2462622363 989 ERAEELQEA-ERFSRKAAQAArDLTRAEAEIELL-QNLLRQKGEQFR 1033
Cdd:COG1196 785 LAIEEYEELeERYDFLSEQRE-DLEEARETLEEAiEEIDRETRERFL 830
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-345 |
7.13e-21 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 97.70 E-value: 7.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 173 KLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQDISKLKPLQdliSLILVENPVVTLPHYLQFTifHLRSLeSLEG 252
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLTNLE---ELDLSNNQLTDLPPLANLT--NLKTL-DLSN 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 253 QPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKN 332
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
250
....*....|...
gi 2462622363 333 ELLKQKTIELTRA 345
Cdd:COG4886 362 LLTLLLTLGLLGL 374
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
443-1098 |
6.56e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.31 E-value: 6.56e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLE-----LQMEKQKQEIAGKQKEIKDLQIAIDS 517
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQLEPLERQAEKAERYRELKEELKELEaelllLKLRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 518 LDSKdpkHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLT--EGQIAANEALKKDLEGVISG 595
Cdd:COG1196 258 LEAE---LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRelEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 596 LQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivamdaENMRKELAELESALQEQHEVNASLQQTQGD 675
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 676 LSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQD 755
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 756 DNNLLKQQLKDFQNHLNhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHspsdvlgksladlqkqfseilarskWERDE 835
Cdd:COG1196 489 AAARLLLLLEAEADYEG-------FLEGVKAALLLAGLRGLAGAVAVLIG-------------------------VEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 836 AQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFdkrqhEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEA 915
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF-----LPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 916 DEEKERILAQLRELEKKKKLEDAKSQEQVfgldkelkklkkAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQ 995
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAV------------TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 996 EAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEmektgvgtgansqVLEIEKLNETMERQRTEIARLQNVLDL 1075
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE-------------ELEEEALEEQLEAEREELLEELLEEEE 746
|
650 660
....*....|....*....|...
gi 2462622363 1076 TGSDNKGGFENVLEEIAELRREV 1098
Cdd:COG1196 747 LLEEEALEELPEPPDLEELEREL 769
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1296-2056 |
3.34e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 3.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1375
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1376 LMTELeiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1455
Cdd:TIGR02168 314 LERQL---------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1456 ERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERN 1535
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1536 EDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD------RQLGHKKEELHLLQG---SMVQAKADLQEALR-- 1604
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvKALLKNQSGLSGILGvlsELISVDEGYEAAIEaa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1605 LGETE---VTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML- 1680
Cdd:TIGR02168 543 LGGRLqavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLl 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1681 -------QLENHELQGLKLQHDQRVSELEKTQVAVLEEKLelenlqqisqqqKGEIEWQKQLLERdKREIERMTAESRAL 1753
Cdd:TIGR02168 623 ggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT------------GGSAKTNSSILER-RREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1754 QSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQ 1833
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1834 LQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1913
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1914 NKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEK 1993
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELRRE---LEELRE 922
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 1994 TLSQTKRQLSEREQQLVEKSGELLALQK-EADSMRAdfslLRNQFLTERKKAEKQVASLKEALK 2056
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEA----LENKIEDDEEEARRRLKRLENKIK 982
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
2.25e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 89.99 E-value: 2.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 55 QVEIADENNMLLDYQDHKGADSHAGVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 135 NLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQD-I 211
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEpL 201
|
170 180 190
....*....|....*....|....*....|....*....
gi 2462622363 212 SKLKPLQdliSLILVENPVVTLPHylqfTIFHLRSLESL 250
Cdd:COG4886 202 GNLTNLE---ELDLSGNQLTDLPE----PLANLTNLETL 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
435-1094 |
2.13e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI--------QLKKEALDLELQMEKQKQEIAGKQK 506
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLeeleaqleELESKLDELAEELAELEEKLEELKE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 507 EIKDLQIAIDSLDSKDPKhshMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALK 586
Cdd:TIGR02168 352 ELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 587 KDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVN 666
Cdd:TIGR02168 429 KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 667 ASLQQTQGDLSAYEAELEARLNLRDaeanqlKEELEKVTRLTQLEQSALQAELEKERQAL----KNALGKAQFSEE---K 739
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDE------GYEAAIEAALGGRLQAVVVENLNAAKKAIaflkQNELGRVTFLPLdsiK 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 740 EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVL-------- 811
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLvrpggvit 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 812 -GKSLADLQKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEAR-----MNFDKRQHEARI 884
Cdd:TIGR02168 663 gGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqisaLRKDLARLEAEV 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 885 QQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKLEDAKSQEQVFGLDKELKKLKKAvATSDKL 964
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIEQLKEELKALREALDELRAELT-LLNEEA 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 965 ATAELTIA--KDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQF-RLEMEKTGV 1041
Cdd:TIGR02168 820 ANLRERLEslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALaLLRSELEEL 899
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 1042 GTGANSQVLEIEKLNETMERQRTEIARLQNVLDLTgsdnKGGFENVLEEIAEL 1094
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
430-928 |
1.96e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 430 RGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEAL-DLELQMEKQKQEIAGKQKEI 508
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELaEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 509 KDLQIAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKD 588
Cdd:COG1196 382 EELAEELLEA-----------------LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 589 LEgvisgLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNAS 668
Cdd:COG1196 445 EE-----AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 669 LQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 748
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 749 KLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSPsdvlGKSLADLQKQFSEILAR 828
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA----GGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 829 SKwERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLT 908
Cdd:COG1196 676 EA-EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
490 500
....*....|....*....|
gi 2462622363 909 DLQLQEADEEKERILAQLRE 928
Cdd:COG1196 755 ELPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1775-2036 |
1.30e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1775 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1854
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1855 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERES 1934
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1935 EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSG 2014
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260
....*....|....*....|..
gi 2462622363 2015 ELLALQKEADSMRADFSLLRNQ 2036
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1719-2056 |
3.96e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 3.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1719 QQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1798
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1799 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1878
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1879 LQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELT 1958
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE----EEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1959 DQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLA---LQKEADSMRADFSLLRN 2035
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAE---ADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAAALQN 550
|
330 340
....*....|....*....|.
gi 2462622363 2036 QFLTERKKAEKQVASLKEALK 2056
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKA 571
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1453-2133 |
4.94e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 4.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1453 EELERRAQETAVNLVKAD-------QQLRSLQADAKDLEQHKIKQEEilkeinkivaAKDSDFQCLSKKKEKLTEELQKL 1525
Cdd:COG1196 175 EEAERKLEATEENLERLEdilgeleRQLEPLERQAEKAERYRELKEE----------LKELEAELLLLKLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1526 QKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRL 1605
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1606 getevtekcnhirevkslLEELSFQKGELNVQISERKTQLTlikqeiekeeenlqvvlrqmskhktELKNILDMLQLENH 1685
Cdd:COG1196 325 ------------------LAELEEELEELEEELEELEEELE-------------------------EAEEELEEAEAELA 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1686 ELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEwqkQLLERDKREIERMTAESRALQscveclskekE 1765
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEELE----------E 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1766 DLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQ 1845
Cdd:COG1196 429 ALAEL----EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1846 EELANVQDHLNLAKQDLLHTTKHqdVLLSEQTRLQKDISEWAnrfedcqkeeetkqqqLQVLQNEIEENKLKLVQQEMMF 1925
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVA--VLIGVEAAYEAALEAAL----------------AAALQNIVVEDDEVAAAAIEYL 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1926 QRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSER 2005
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2006 EQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLMANQKDLERRQMEISDAM 2085
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 2462622363 2086 RTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKE 2133
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1511-2181 |
6.92e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 6.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1511 LSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQG 1590
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLV---LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1591 SMVQAKADLQEAlrlgETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlrQMSKHK 1670
Cdd:TIGR02168 275 EVSELEEEIEEL----QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA----ELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1671 TELKNILDMLQLENHELQGLKLQHDQRVSELEKtqvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1750
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEE---QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1751 RALQScvECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENskmeqsnLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1830
Cdd:TIGR02168 424 EELLK--KLEEAELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1831 QQQLQEKREAVNSLQEELAN------------------------------------VQDHLNLAKQDLLHTTKHQDVLLS 1874
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNqsglsgilgvlselisvdegyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1875 -------EQTRLQKDISEWANRFEDCQ---KEEETKQQQLQVLQN------------EIEENKLKLVQQEMMF------- 1925
Cdd:TIGR02168 575 flpldsiKGTEIQGNDREILKNIEGFLgvaKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGYRIvtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1926 ----------------QRLQKERESEEskLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCE 1989
Cdd:TIGR02168 655 vrpggvitggsaktnsSILERRREIEE--LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1990 SLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEknllmA 2069
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD-----E 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2070 NQKDLERRQMEISDAMRTLKSEVKDEIRTSlknlnQFLPELPADLEAILERNENLEGELESLKENLpftmnegpfeEKLN 2149
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATE-----RRLEDLEEQIEELSEDIESLAAEIEELEELI----------EELE 872
|
730 740 750
....*....|....*....|....*....|..
gi 2462622363 2150 FSQVHIMDEHWRGEALREKLRHREDRLKAQLR 2181
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELR 904
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1294-1958 |
8.20e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 8.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1294 HNLENEVSRLEDIMQHLKSKKREerwMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNV 1373
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDE---LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1374 ESLmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAE-SELSCTKEKTKNAVEKFTDAKRSLLQTESDA 1452
Cdd:TIGR02168 389 AQL--ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEEL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1453 EELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLS------KKKEK--------- 1517
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSelisvdEGYEAaieaalggr 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1518 ----LTEELQKLQKDIEMAERNEDHHLQVLkeseVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELH-----LL 1588
Cdd:TIGR02168 547 lqavVVENLNAAKKAIAFLKQNELGRVTFL----PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyLL 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1589 QGSMV----QAKADLQEALRLGETEVTEKCNHIREVKSlleeLSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLR 1664
Cdd:TIGR02168 623 GGVLVvddlDNALELAKKLRPGYRIVTLDGDLVRPGGV----ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1665 QMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIE 1744
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1745 RMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1824
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1825 NDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedCQKEEETKQQQL 1904
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE-------LREKLAQLELRL 931
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 1905 QVLQNEIEENKLKL-VQQEMMFQrlqkERESEESKLETSKVTLKEQQHQLEKELT 1958
Cdd:TIGR02168 932 EGLEVRIDNLQERLsEEYSLTLE----EAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1324-1913 |
9.80e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 9.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1324 KRQSEKEMEELHHN---IDDLLQEK----KSLE--CEVEELHRTVQKRQQQKDfidgnveSLMTELEIEKSLKHHEDIVD 1394
Cdd:COG1196 174 KEEAERKLEATEENlerLEDILGELerqlEPLErqAEKAERYRELKEELKELE-------AELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1395 EIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLR 1474
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1475 SLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKR 1554
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1555 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGEL 1634
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1635 NVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILD----------------MLQLENHE--------LQGL 1690
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeaaleaalaaALQNIVVEddevaaaaIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1691 KLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEk 1770
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1771 cdiWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN 1850
Cdd:COG1196 646 ---LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 1851 VQDHLNLAKQDLLHttkhqdvLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1913
Cdd:COG1196 723 EEALEEQLEAEREE-------LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1328-2157 |
9.83e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 9.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1328 EKEMEELHHNIDDLLQEKKSLECEVEELHR--TVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLK 1405
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1406 RRSELREADRLLAEAESELSCTKEKTKNAV-EKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE 1484
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1485 QhkikqeeilkeinkivaakdsDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1564
Cdd:TIGR02169 343 R---------------------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1565 TSQQQEMavldRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1644
Cdd:TIGR02169 402 NELKREL----DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1645 LTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVleEKLELENLQQISQQ 1724
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI--EVAAGNRLNNVVVE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1725 QKGEIEWQKQLLERdkREIERMT----AESRALQSCVECLSKEKE-----DLQEKCDIWEKKLAQTKRvlaaaeenSKME 1795
Cdd:TIGR02169 556 DDAVAKEAIELLKR--RKAGRATflplNKMRDERRDLSILSEDGVigfavDLVEFDPKYEPAFKYVFG--------DTLV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1796 QSNLE---KLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREavnslQEELANVQDHLNLAKQDLlhttkhqDVL 1872
Cdd:TIGR02169 626 VEDIEaarRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSE-----PAELQRLRERLEGLKREL-------SSL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1873 LSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQ-- 1950
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEed 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1951 -HQLEKELTDQKSKLDQvlskvlaaeERVRTLQEEERwceSLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRAD 2029
Cdd:TIGR02169 774 lHKLEEALNDLEARLSH---------SRIPEIQAELS---KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2030 FSLLRNQFLTERKKAE---KQVASLKEALKiqRSQLEKNLLMANQKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQF 2106
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIEnlnGKKEELEEELE--ELEAALRDLESRLGDLKKERDELEAQLRELERK-IEELEAQIEKKRKR 918
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 2107 LPELPADLEAILERNENLEGELESLKENLPFTMNEGPFEEKLNFSQVHIMD 2157
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
1.54e-13 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 70.95 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 209 QDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1452-2051 |
2.78e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 2.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1452 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1531
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1532 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLgetevt 1611
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE------ 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1612 ekcnhIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK 1691
Cdd:COG1196 374 -----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1692 LQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRAlqscveclSKEKEDLQEKC 1771
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--------VKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1772 DIWEKK--LAQTKRVLAAAEENSkMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELA 1849
Cdd:COG1196 521 GLAGAVavLIGVEAAYEAALEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1850 NVQDHLNLAKQDLLHTTKHQDVLLSEqtrlqkdiSEWANRFEDCQKEEETKQQQLQVLQNEIEEnklkLVQQEMMFQRLQ 1929
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGR--------TLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1930 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwceslEKTLSQTKRQLSEREQQL 2009
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE------EALEEQLEAEREELLEEL 741
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 2462622363 2010 VEKSGELLALQKEADSMRADFSLLRnqflTERKKAEKQVASL 2051
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
558-938 |
4.08e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 4.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 558 SRIAKETEEIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 635
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 636 DQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDAEANQLKEELEKVT-RLTQL 710
Cdd:TIGR02168 757 TELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLErRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 711 EQSALQAELEKERQALKNALGKAQFSEEKEQENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDE 790
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 791 LRRKLKLgtgemnihspsdvlgksladLQKQFSEILARskweRDEAQVRERKLQEEMALQQEKLATGQEEfrqaceraLE 870
Cdd:TIGR02168 913 LRRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 871 ARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEEiqgltdlqLQEADEEKERILAQLRELEK-KKKLEDA 938
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPvNLAAIEE--------YEELKERYDFLTAQKEDLTEaKETLEEA 1022
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
443-1035 |
8.01e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 74.18 E-value: 8.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAG-----KQKEIKDLQIAIDS 517
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 518 LDskdpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAK-ETEEIKDLEEqltegQIAANEALKKDLEGVISGL 596
Cdd:COG4913 300 LR----------AELARLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLER-----EIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 597 QEYLGTIKGQATQAQNE----CRKLRDEKETLLQRLTEVEQERDQLEIvamDAENMRKELAELESALqeqhevnASLQQT 672
Cdd:COG4913 365 EALLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEA---ALRDLRRELRELEAEI-------ASLERR 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 673 QGDLSAYE----AELEARLNLRDAEAN------QLKEE-------LEKV---TRLTQLeqsalqAELEKERQALK--NAL 730
Cdd:COG4913 435 KSNIPARLlalrDALAEALGLDEAELPfvgeliEVRPEeerwrgaIERVlggFALTLL------VPPEHYAAALRwvNRL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 731 ---GKAQFSEEKEQENSELHAKLkhlqDDNNLL-KQQLKD--FQNHLNHVvdgLVRPEEVA--ARVDELRR--------- 793
Cdd:COG4913 509 hlrGRLVYERVRTGLPDPERPRL----DPDSLAgKLDFKPhpFRAWLEAE---LGRRFDYVcvDSPEELRRhpraitrag 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 794 --KLKLGTGEMNIHSPSD---VLGKS----LADLQKQfseiLARSKWERDEAQVRERKLQEEMALQQEKlatgqeefRQA 864
Cdd:COG4913 582 qvKGNGTRHEKDDRRRIRsryVLGFDnrakLAALEAE----LAELEEELAEAEERLEALEAELDALQER--------REA 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 865 CERALEARMNF-DKRQHEARIQQMENEihyLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKK-----KKLEDA 938
Cdd:COG4913 650 LQRLAEYSWDEiDVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEEELDELKGEigrleKELEQA 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 939 KSQEQvfgldkelkklkkavATSDKLATAELTIAKDQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRAEAEI 1018
Cdd:COG4913 726 EEELD---------------ELQDRLEAAEDLARLELRALL--------EERFAAALGDAVERELRENLEERIDALRARL 782
|
650
....*....|....*..
gi 2462622363 1019 ELLQNLLRQKGEQFRLE 1035
Cdd:COG4913 783 NRAEEELERAMRAFNRE 799
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1314-2082 |
8.84e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.38 E-value: 8.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1314 KREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHH--ED 1391
Cdd:pfam15921 88 KDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1392 IVDEIECIEKTLLKRRSELREADRLLAEAEsELSCTKEKTKNAVEkfTDAKRSLLQTESDA-EELERRAQETAVNLVKAD 1470
Cdd:pfam15921 168 SNTQIEQLRKMMLSHEGVLQEIRSILVDFE-EASGKKIYEHDSMS--TMHFRSLGSAISKIlRELDTEISYLKGRIFPVE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1471 QQLRSLQADAKD-----LEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERnedhhlQVLKE 1545
Cdd:pfam15921 245 DQLEALKSESQNkiellLQQHQDRIEQLISE-------HEVEITGLTEKASSARSQANSIQSQLEIIQE------QARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1546 SEVLLQakraELEKLKSQVTSQQQEMAVLDRQLGHKKEELhllQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLE 1625
Cdd:pfam15921 312 NSMYMR----QLSDLESTVSQLRSELREAKRMYEDKIEEL---EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1626 ELSFQKGELNVQiserKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQ 1705
Cdd:pfam15921 385 DLHKREKELSLE----KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1706 VAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRvl 1785
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN-- 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1786 aaAEENSKMEQSNLEKLELN-------VRKLQQELDQLNR--------------DKLSLHNDISAMQQQLQE----KREA 1840
Cdd:pfam15921 539 --EGDHLRNVQTECEALKLQmaekdkvIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRLELQEfkilKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1841 VNSLQEELANVQDhLNLAKQDLLHTTkhqdvllSEQTRLQKDISE----WANRFEDCQKEEETKQQQLQVLQNEIEEnkl 1916
Cdd:pfam15921 617 DAKIRELEARVSD-LELEKVKLVNAG-------SERLRAVKDIKQerdqLLNEVKTSRNELNSLSEDYEVLKRNFRN--- 685
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1917 KLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQ----------LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1986
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKH 765
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1987 WCESLEKTLSQtkrqlsereqqlveksgELLALQKEADSMRADFSLLRNQfltERKKAEKqVASLKEALKiqrsqlEKNL 2066
Cdd:pfam15921 766 FLKEEKNKLSQ-----------------ELSTVATEKNKMAGELEVLRSQ---ERRLKEK-VANMEVALD------KASL 818
|
810
....*....|....*.
gi 2462622363 2067 LMANQKDLERRQMEIS 2082
Cdd:pfam15921 819 QFAECQDIIQRQEQES 834
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1325-2009 |
9.45e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.33 E-value: 9.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1325 RQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKhhEDIVDEIECIEKTLL 1404
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR--DKLTEEYAELKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1405 KRRSELREADRLLAEaeselscTKEKTKNAVEKFTDAKRSLlqtesdaEELERRAQETAVNLVKADQQLRSLQADAKDLE 1484
Cdd:TIGR02169 368 DLRAELEEVDKEFAE-------TRDELKDYREKLEKLKREI-------NELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1485 QHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQV 1564
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1565 T---SQQQEMAVLDRQLGHKKEELHL---------LQGSMVQAKADLQEALRLGETEVTEKC-----NHIREVKSLLEEL 1627
Cdd:TIGR02169 514 EvlkASIQGVHGTVAQLGSVGERYATaievaagnrLNNVVVEDDAVAKEAIELLKRRKAGRAtflplNKMRDERRDLSIL 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1628 SfQKGELN-----VQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKtelknildMLQLENHELQ--------GLKLQH 1694
Cdd:TIGR02169 594 S-EDGVIGfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR--------MVTLEGELFEksgamtggSRAPRG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1695 DQRVSELEKTQVAVLEEKLELENLQQISQQQkgEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1774
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQS--ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1775 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLslhndisamQQQLQEKREAVNSLQEELANVQDH 1854
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEAR 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1855 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE- 1933
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDe 893
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 1934 --SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKtLSQTKRQLSEREQQL 2009
Cdd:TIGR02169 894 leAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRAL 970
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
255-1019 |
1.60e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 255 VTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNEL 334
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 335 LKQKTIELTRACQKQYELEQELAfyKIDAKFeplnyypsEYAEIDkapdespyigKSRYKRNMFATESYIIDSAQAVQIK 414
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIA--SLNNEI--------ERLEAR----------LERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 415 KMEPDEQLRNDhmnlrghtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE------EAIQLKKEAL 488
Cdd:TIGR02168 434 ELKELQAELEE---------LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarldslERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 489 DLEL-QMEKQKQEIAGKQKEIKDL--------------------QIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQ 547
Cdd:TIGR02168 505 SEGVkALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlqAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 548 QLESRLDEILSRIAKETEEIKDLEEQLTEGQIA----------------ANEALKK-DLEGVISGLQEYLGTIKGQATQA 610
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnALELAKKlRPGYRIVTLDGDLVRPGGVITGG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 611 QNEcrklrdEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEqhevnasLQQTQGDLSAYEAELEARLNLR 690
Cdd:TIGR02168 665 SAK------TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISAL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 691 DAEANQLKEELEKVTRLTQLEQSALqAELEKERQALKNALGKAQFS-EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQn 769
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKEL-TELEAEIEELEERLEEAEEElAEAEAEIEELEAQIEQLKEELKALREALDELR- 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 770 hlnhvvdglvrpeevaARVDELRRKL-KLGTGEMNIHSPSDVLGKSLADLQKQF---SEILARSKWERDEAQVRERKLQE 845
Cdd:TIGR02168 810 ----------------AELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELES 873
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 846 EMALQQEKLATGQEEFRQAceralearmNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQ 925
Cdd:TIGR02168 874 ELEALLNERASLEEALALL---------RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 926 LRElEKKKKLEDAKSQEQvfgldkelkklkkAVATSDKLATAELTIAKDQLKSLhGTVmkiNQERAEELQE-AERFSRKA 1004
Cdd:TIGR02168 945 LSE-EYSLTLEEAEALEN-------------KIEDDEEEARRRLKRLENKIKEL-GPV---NLAAIEEYEElKERYDFLT 1006
|
810
....*....|....*
gi 2462622363 1005 AQAArDLTRAEAEIE 1019
Cdd:TIGR02168 1007 AQKE-DLTEAKETLE 1020
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
2.70e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 71.12 E-value: 2.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 83 ITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 163 EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQdiSKLKPLQDLISLILVENPVVTLPHylqfTIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 2462622363 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1292-1819 |
2.82e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 2.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1292 EHHNLENEVSRLEDIMQHLKSKKREERwmrASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidg 1371
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE---AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1372 nveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESD 1451
Cdd:COG1196 307 ------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1452 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEM 1531
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1532 AERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMV----------QAKADLQE 1601
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavligvEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1602 ALRLGETEVTEKCNHIREVKSLLEELSFQKGE------LNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1675
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1676 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1755
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 1756 CVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLEL-----------NVRKLQQELDQLNRD 1819
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
461-774 |
6.02e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 6.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 461 EKAEQQILRATEEFKQLEEAI-QLKKEALDLELQMEKQKQEIAgKQKEIKDLQIAI--DSLDSKDPKHSHMKAQKSGKEQ 537
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILnELERQLKSLERQAEKAERYKE-LKAELRELELALlvLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 538 QLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKL 617
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN-----EISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 618 RDEKETLLQRLTEVEQERDQLEIvamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQL 697
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKE---ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 698 KEELE----KVTRLTQLEQSALQAELEKERQALKNALG-KAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLN 772
Cdd:TIGR02168 406 EARLErledRRERLQQEIEELLKKLEEAELKELQAELEeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
..
gi 2462622363 773 HV 774
Cdd:TIGR02168 486 QL 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-1108 |
2.38e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 2.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 245 RSLESLEGQPVTTQDRQEAferfsLEEVERLERDLEKKmiETEELKSKQTRFLEEIK-NQDKLNKSLKEEAMLQKQScEE 323
Cdd:TIGR02168 200 RQLKSLERQAEKAERYKEL-----KAELRELELALLVL--RLEELREELEELQEELKeAEEELEELTAELQELEEKL-EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 324 LKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKidakfeplnyypseyaeidkapdespyigksrykrnmfatesy 403
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILR------------------------------------------- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 404 iidsaqavqikkmepdEQLRNDHMNLRghtPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ- 482
Cdd:TIGR02168 309 ----------------ERLANLERQLE---ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEe 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 483 LKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSkdpkhshmkaqksgkeqqldimnkQYQQLESRLDEILSRIAK 562
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA------------------------RLERLEDRRERLQQEIEE 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 563 ETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVA 642
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 643 MDAENM---RKELAELESALQEQHEVNASLQQtqgdlsAYEAELEARLNL---------RDAEANQLKEELEKVTRLtQL 710
Cdd:TIGR02168 506 EGVKALlknQSGLSGILGVLSELISVDEGYEA------AIEAALGGRLQAvvvenlnaaKKAIAFLKQNELGRVTFL-PL 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 711 EQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKL----------KHLQDDNNLLKQQLKDFqnhLNHVVDG-LV 779
Cdd:TIGR02168 579 DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvDDLDNALELAKKLRPGY---RIVTLDGdLV 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 780 RPE---------------EVAARVDELRRKLKLGTGEMNIhspsdvLGKSLADLQKQFSEILArskwERDEAQVRERKLQ 844
Cdd:TIGR02168 656 RPGgvitggsaktnssilERRREIEELEEKIEELEEKIAE------LEKALAELRKELEELEE----ELEQLRKELEELS 725
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 845 EEMALQQEKLATGQEEFRQACERAleARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILA 924
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERI--AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 925 QLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLAtAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKA 1004
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE-EQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1005 AQAARDLTRAEAEIELLQNLLRQKGEQF-RLEMEKTGVGTGANSQVLEIEKLNETMERQrteIARLQNVLDLTGSDNKGG 1083
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRsELRRELEELREKLAQLELRLEGLEVRIDNL---QERLSEEYSLTLEEAEAL 959
|
890 900
....*....|....*....|....*
gi 2462622363 1084 FENVLEEIAELRREVSYQNDYISSM 1108
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1344-1986 |
3.05e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 69.31 E-value: 3.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1344 EKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEK--------SLKHHEDIVDEIECIEKTLLKRRSELREADR 1415
Cdd:TIGR00606 406 EAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKeilekkqeELKFVIKELQQLEGSSDRILELDQELRKAER 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1416 LLAEAE--SELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEI 1493
Cdd:TIGR00606 486 ELSKAEknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1494 LKEINKIVAAKDSdFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLL-------------QAKRAELEKL 1560
Cdd:TIGR00606 566 LGYFPNKKQLEDW-LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLssyedklfdvcgsQDEESDLERL 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1561 KSQVTSQQQEMAVLD----------RQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQ 1630
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAgatavysqfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1631 KGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLK-LQHDQRVSElektQVAVL 1709
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvCLTDVTIME----RFQME 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1710 EEKLELENLQQISQQQKGEIEWQKQLLERDKREIERmtaESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAE 1789
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH---ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1790 ENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKH- 1868
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYm 957
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1869 -------QDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK---------LKLVQQEMMFQRLQKER 1932
Cdd:TIGR00606 958 kdienkiQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKiqerwlqdnLTLRKRENELKEVEEEL 1037
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 1933 ESEESKLETSKVTLKEQQHQ-LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1986
Cdd:TIGR00606 1038 KQHLKEMGQMQVLQMKQEHQkLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
419-1113 |
3.85e-11 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 68.71 E-value: 3.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 419 DEQLRNDHMNLRGHTpldTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQ--MEK 496
Cdd:pfam12128 229 DIQAIAGIMKIRPEF---TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 497 QKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQldimnkQYQQLESRLDEILSRIAKETEEIKDLEEQLTE 576
Cdd:pfam12128 306 LNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQE------QLPSWQSELENLEERLKALTGKHQDVTAKYNR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 577 GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKL---------------RDEKETLLQRLTEVEQERDQLEIV 641
Cdd:pfam12128 380 RRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALeselreqleagklefNEEEYRLKSRLGELKLRLNQATAT 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 642 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA---RLNLRDAEANQLKEELEKVTRLTQLEQSALQAE 718
Cdd:pfam12128 460 PELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQaseALRQASRRLEERQSALDELELQLFPQAGTLLHF 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 719 LEKERQALKNALGKAQFSEekeqensELHAKLKHLQDDNNLLKQQLKDFQNHLNhvVDGLVRPEEVAARvDELRRKLklg 798
Cdd:pfam12128 540 LRKEAPDWEQSIGKVISPE-------LLHRTDLDPEVWDGSVGGELNLYGVKLD--LKRIDVPEWAASE-EELRERL--- 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 799 tgemnihspsDVLGKSL---ADLQKQFSEILARSKWERDEAQVRE---RKLQEEMALQQEKLATGQEEFRQACERALEAR 872
Cdd:pfam12128 607 ----------DKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSEKDKKNKALAER 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 873 mnfdKRQHEARIQQMENEIHYLQENLKSMEEIQgltDLQLQEADEEKeriLAQLRELEKKKKLEDAKSQEQVFGLDKELK 952
Cdd:pfam12128 677 ----KDSANERLNSLEAQLKQLDKKHQAWLEEQ---KEQKREARTEK---QAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 953 KLKKAVATS-----DKLATAELTIAK--DQLKSLHGTVMKINQERAEELQ----EAERFSRKAAQAARDLTRAEAEIELL 1021
Cdd:pfam12128 747 AELKALETWykrdlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNIERAISEL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1022 QNLLRQKGEQFRLEMEKTGVGTGANSQVLeiEKLNETMERQRTEIARLQNV-LDLTGSDNKGGFENVLEEIAELRREVSY 1100
Cdd:pfam12128 827 QQQLARLIADTKLRRAKLEMERKASEKQQ--VRLSENLRGLRCEMSKLATLkEDANSEQAQGSIGERLAQLEDLKLKRDY 904
|
730
....*....|...
gi 2462622363 1101 QNDYISSMADPFK 1113
Cdd:pfam12128 905 LSESVKKYVEHFK 917
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-280 |
5.12e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 67.27 E-value: 5.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKL 174
Cdd:COG4886 203 NLTNLEELDLS-----GNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 175 NLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQP 254
Cdd:COG4886 278 DLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357
|
170 180
....*....|....*....|....*.
gi 2462622363 255 VTTQDRQEAFERFSLEEVERLERDLE 280
Cdd:COG4886 358 LLSLLLTLLLTLGLLGLLEATLLTLA 383
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1296-2135 |
5.14e-11 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 68.53 E-value: 5.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHH---NIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGN 1372
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1373 VESLM--TELEIEKSLKHHEDIVDEIE----CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFT--DAKRS 1444
Cdd:TIGR00606 292 MEKVFqgTDEQLNDLYHNHQRTVREKErelvDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1445 LLQTESDAEELER-----RAQETAVNLVKADQQlRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLT 1519
Cdd:TIGR00606 372 SLATRLELDGFERgpfseRQIKNFHTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1520 EELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRaELEKLKSQVTSQQQEMAVLdrqlghkkeelhllqgSMVQAKADL 1599
Cdd:TIGR00606 451 KKQEELKFVIKELQQLEGSSDRILELDQELRKAER-ELSKAEKNSLTETLKKEVK----------------SLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1600 QEALRlGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDM 1679
Cdd:TIGR00606 514 DRKLR-KLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1680 LQLENHELQGLKLQHDQRVSELEKTQvAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVEC 1759
Cdd:TIGR00606 593 LAKLNKELASLEQNKNHINNELESKE-EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1760 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKRE 1839
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1840 AVNSLQEELANVQDHLnlakqdllhttkhqdvllSEQTRLQKDISEWANRFEDCQKEEETKQQqlqvLQNEIEENKLKLV 1919
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDI------------------EEQETLLGTIMPEEESAKVCLTDVTIMER----FQMELKDVERKIA 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1920 QQEmmfqrlqkereseeSKLETSKVTLKEQQhqLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTK 1999
Cdd:TIGR00606 810 QQA--------------AKLQGSDLDRTVQQ--VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2000 RQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEAlkIQRSQLEKNLLMANQKDLERRQM 2079
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL--ISSKETSNKKAQDKVNDIKEKVK 951
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 2080 EISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2135
Cdd:TIGR00606 952 NIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
435-1060 |
6.33e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.14 E-value: 6.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKK-----ISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkealdlelqmekqkqEIAGKQKEIK 509
Cdd:PRK02224 192 LKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLE-----------------EHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 510 DLQIAIDSLDSKdpkhshmkaqKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIkdleeQLTEGQIAANEALKKDL 589
Cdd:PRK02224 255 TLEAEIEDLRET----------IAETEREREELAEEVRDLRERLEELEEERDDLLAEA-----GLDDADAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 590 EGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQEQHEVNASL 669
Cdd:PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE---SELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 670 QQTQGDLSAYEAELEARLNLRDAEANQLKEELekvtrltqleqsalqAELEKERQALKNALGKAQ--------------- 734
Cdd:PRK02224 397 RERFGDAPVDLGNAEDFLEELREERDELRERE---------------AELEATLRTARERVEEAEalleagkcpecgqpv 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 735 -------FSEEKEQENSELHAKLkhlqddnnllkQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSP 807
Cdd:PRK02224 462 egsphveTIEEDRERVEELEAEL-----------EDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 808 S-DVLGKSLADLQKQFSEILARSKWERDEAQvrerKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQheARIQQ 886
Cdd:PRK02224 531 TiEEKRERAEELRERAAELEAEAEEKREAAA----EAEEEAEEAREEVAELNSK-LAELKERIESLERIRTLL--AAIAD 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 887 MENEIHYLQENLKSMEEIQgltdlqlqeaDEEKERiLAQLRelEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKlAT 966
Cdd:PRK02224 604 AEDEIERLREKREALAELN----------DERRER-LAEKR--ERKRELEAEFDEARIEEAREDKERAEEYLEQVEE-KL 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 967 AELTIAKDQLKSLHGTVmKINQERAEELQEaerfsRKAAQAAR--DLTRAEAEIELLQNLLRqkgeQFRLEMEKTGVGTg 1044
Cdd:PRK02224 670 DELREERDDLQAEIGAV-ENELEELEELRE-----RREALENRveALEALYDEAEELESMYG----DLRAELRQRNVET- 738
|
650
....*....|....*.
gi 2462622363 1045 ansqvLEIeKLNETME 1060
Cdd:PRK02224 739 -----LER-MLNETFD 748
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
243-934 |
9.89e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 9.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 243 HLRSLESLEGQPVTTQDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLN-----KSLKEEAMLQ 317
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEE-ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekiGELEAEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 318 KQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYK---------IDAKFEPLNYYPSEYAEIDKAPDESPYI 388
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERkrrdklteeYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 389 GKSRYKRNMFATESyiIDSAQAVQIKKMEPDEQLRNDHMNLR--------GHTPLDTQLEDKEKKISAAQTRLSELHDEI 460
Cdd:TIGR02169 387 LKDYREKLEKLKRE--INELKRELDRLQEELQRLSEELADLNaaiagieaKINELEEEKEDKALEIKKQEWKLEQLAADL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 461 EKAEQQILRATEEFKQLEEAIQLKKEALDlelQMEKQKQEIAGKQKEIKDLQIAIDS-----------LDSKDPKHS--- 526
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELA---EAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvaqLGSVGERYAtai 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 527 ------------------------HMKAQKSGKEQQLDIMN-KQYQQLESRLDE-------------------ILSRIAK 562
Cdd:TIGR02169 542 evaagnrlnnvvveddavakeaieLLKRRKAGRATFLPLNKmRDERRDLSILSEdgvigfavdlvefdpkyepAFKYVFG 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 563 ETEEIKDLEEQLTEGQIAANEALKKDL---EGVISG-------LQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVE 632
Cdd:TIGR02169 622 DTLVVEDIEAARRLMGKYRMVTLEGELfekSGAMTGgsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIE 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 633 QERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYE----------AELEARLNLRDAEANQLKEEL 701
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqeienvkselKELEARIEELEEDLHKLEEAL 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 702 EKVTRLTQLEQ----SALQAELEKERQALKNALGKAQFSEEKEQENSE-LHAKLKHLQDDNNLLKQQLKDFQNHLNhvvD 776
Cdd:TIGR02169 782 NDLEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyLEKEIQELQEQRIDLKEQIKSIEKEIE---N 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 777 GLVRPEEVAARVDELRRKLK-LGTGEMNIHSPSDVLGKSLADLQKQFSEIlarsKWERDEAQVRERKLQEEMALQQEKLA 855
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRdLESRLGDLKKERDELEAQLRELERKIEEL----EAQIEKKRKRLSELKAKLEALEEELS 934
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 856 TGQEEFRQACEralEARMNFDKRQHEARIQQMENEIHYLQE-NLKSMEE----IQGLTDLQLQEA--DEEKERILAQLRE 928
Cdd:TIGR02169 935 EIEDPKGEDEE---IPEEELSLEDVQAELQRVEEEIRALEPvNMLAIQEyeevLKRLDELKEKRAklEEERKAILERIEE 1011
|
....*.
gi 2462622363 929 LEKKKK 934
Cdd:TIGR02169 1012 YEKKKR 1017
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
441-1051 |
1.47e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQME-KQKQEIAGKQKEIKDLQIAIDSLD 519
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEeARKADELKKAEEKKKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 520 SKDPKHSHMKAQKSGKEQQLdimNKQYQQLESRLDEILSRI--AKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQ 597
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEA---KKKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 598 EYLGTIKGQATQAQ--NECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKElAELESALQEQHEVNASLQQTQGD 675
Cdd:PTZ00121 1378 KKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEAKKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 676 LSAYEAELEARLNLRDAEANQLKEELEKVTRLTQ-LEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQ 754
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKkAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 755 DDNNLLKQQLKdfqnhlnhvVDGLVRPEEVaaRVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERD 834
Cdd:PTZ00121 1537 DEAKKAEEKKK---------ADELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 835 EAQVRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQE 914
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 915 ADEEKerilaqlRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSlhgtvmkiNQERAEEL 994
Cdd:PTZ00121 1685 EDEKK-------AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE--------DKKKAEEA 1749
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 995 QEAERFSRKAAQAARDLTRAEAEIE-----LLQNLLRQKGEQFRLEMEKTGVGTGANSQVLE 1051
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRkekeaVIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1593-2135 |
1.83e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 1.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1593 VQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELnvqiSERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTE 1672
Cdd:PRK03918 185 IKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1673 LKNILDMLQLENHELQGLKlqhdQRVSELEKTQVAVLEEKLELENLQQIsQQQKGEIEWQKQLLERDKREIERMTAESRA 1752
Cdd:PRK03918 261 IRELEERIEELKKEIEELE----EKVKELKELKEKAEEYIKLSEFYEEY-LDELREIEKRLSRLEEEINGIEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1753 LQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEEnskMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDIS---A 1829
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE---LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISkitA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1830 MQQQLQEKREAVNSLQEELANVQDHLNLAKQDLlhTTKHQDVLLSEQTRLQKDISewanrfedcqKEEETKQQQLQVLQN 1909
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKGKCPVCGREL--TEEHRKELLEEYTAELKRIE----------KELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1910 EIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQhQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCE 1989
Cdd:PRK03918 481 ELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE-KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1990 SLEKTLSQTKRQLSEREQQLVEKSGELLalqKEADSMRADFSLLRNQFLtERKKAEKQVASLKEALKIQRSQLEKNLLMA 2069
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESV---EELEERLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEEL 635
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 2070 NQ--KDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2135
Cdd:PRK03918 636 AEteKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1299-2106 |
9.28e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 9.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1299 EVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEV------------EELHRTVQKRQQQK 1366
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyldylklneERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1367 DFIDGNVESLMTELEI-EKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSL 1445
Cdd:pfam02463 251 EEIESSKQEIEKEEEKlAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1446 LQTESDAEELERRAQE----TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE 1521
Cdd:pfam02463 331 KKEKEEIEELEKELKEleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1522 LQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQE 1601
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1602 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRqmskHKTELKNILDMLQ 1681
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV----SATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1682 LENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLS 1761
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1762 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAV 1841
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1842 NSLQEELANVQdhLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQ 1921
Cdd:pfam02463 727 VQEAQDKINEE--LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1922 EMMFQR-----LQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLA----AEERVRTLQEEERWCESLE 1992
Cdd:pfam02463 805 ALEEELkeeaeLLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEeitkEELLQELLLKEEELEEQKL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1993 KTLSQTKRQLSEREQQLVE----KSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLM 2068
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEeesqKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKR 964
|
810 820 830
....*....|....*....|....*....|....*...
gi 2462622363 2069 ANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQF 2106
Cdd:pfam02463 965 LLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1775-2008 |
9.34e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.86 E-value: 9.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1775 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1854
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1855 LN--LAKQDLLHTTKHQDVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEEnklklvqqemmFQRLQKER 1932
Cdd:COG4942 106 LAelLRALYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 1933 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQ 2008
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA---EELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
441-733 |
1.27e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.78 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEaiqlKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDS 520
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE----RREALQRLAEYSWDEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 521 KDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGL--QE 598
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAlgDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 599 YLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDA--------------------------------E 646
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAdleslpeylalldrleedglpeyeerfkellnE 842
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 647 NMRKELAELESALQEQ--------HEVNASLQQTQ-GDLSAYEAELEARlnlRDAEANQLKEELEKVTRLTQLEQSALQA 717
Cdd:COG4913 843 NSIEFVADLLSKLRRAireikeriDPLNDSLKRIPfGPGRYLRLEARPR---PDPEVREFRQELRAVTSGASLFDEELSE 919
|
330
....*....|....*.
gi 2462622363 718 ELEKERQALKNALGKA 733
Cdd:COG4913 920 ARFAALKRLIERLRSE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-754 |
1.37e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 438 QLEDKEKKISAAQTRLSELHDEIEKAE--QQILRATEEFKQLEeaiqLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAI 515
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYE----LLKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 516 DSLDskdpKHSHMKAQKSgKEQQLDIMNK---QYQQLESRLDEILSRIAKETEEIKDLEEQL--TEGQIAANEALKKDLE 590
Cdd:TIGR02169 261 SELE----KRLEEIEQLL-EELNKKIKDLgeeEQLRVKEKIGELEAEIASLERSIAEKERELedAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 591 GVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQE----RDQLEIVAMDAENMRKELAELESALQEQHEVN 666
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaetRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 667 ASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRltQLEQsaLQAELEKERQALKNALGK-AQFSEEKEQENSE 745
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW--KLEQ--LAADLSKYEQELYDLKEEyDRVEKELSKLQRE 491
|
....*....
gi 2462622363 746 LHAKLKHLQ 754
Cdd:TIGR02169 492 LAEAEAQAR 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1403-1769 |
1.42e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1403 LLKRRSELREADRLLAEAESELsctkEKTKNAVEkftDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKD 1482
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKI----AELEKALA---ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1483 LEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRAELEKLKS 1562
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE-------LKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1563 QVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1642
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1643 TQLTlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELeKTQVAVLEEKLELENLQQIS 1722
Cdd:TIGR02168 894 SELE-----------ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-QERLSEEYSLTLEEAEALEN 961
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 1723 QQQKGEIEWQKQlLERDKREIERM-------TAESRALQSCVECLSKEKEDLQE 1769
Cdd:TIGR02168 962 KIEDDEEEARRR-LKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDLTE 1014
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1291-1885 |
1.53e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1291 PEHHNLENEVSRLEDIMQHLKSKKR--EERWMRASKRQSEKEMEELHHN--IDDLLQEKKSLECEVEELH---RTVQKRQ 1363
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEelEEQLETLRSKVAQLELQIASLNneIERLEARLERLEDRRERLQqeiEELLKKL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1364 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTkEKTKNAVEKFTDAKR 1443
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVK 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1444 SLLQTESD--------AEELERRAQ-ETAVNLVKAD--QQLRSLQADAKDLEQHKIKQEEI---------------LKEI 1497
Cdd:TIGR02168 510 ALLKNQSGlsgilgvlSELISVDEGyEAAIEAALGGrlQAVVVENLNAAKKAIAFLKQNELgrvtflpldsikgteIQGN 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1498 NKIVAAKDSDFQCLSKKKEKLTEELQK--------------LQKDIEMAERNEDHHLQVLKESEVL-------------- 1549
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVrpggvitggsaktn 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1550 --LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEEL 1627
Cdd:TIGR02168 670 ssILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1628 SFQKGELNVQISERKTQLTlikqeiekeeenlqvvlrQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVA 1707
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEE------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1708 VLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAEsralqscVECLSKEKEDLQEKCDIWEKKLAQTKRVLAA 1787
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELESELEALLNERAS 884
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1788 AEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELAN-VQDHLNLAKQDLLHTT 1866
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIE 964
|
650
....*....|....*....
gi 2462622363 1867 KHQDVLLSEQTRLQKDISE 1885
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKE 983
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1390-1970 |
1.75e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1390 EDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1469
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1470 DQQLRSLQADAKDLEQHKIKQEEILKEIN-------KIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDH---- 1538
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLteikkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknk 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1539 ---------HLQVLKESEVLLQAKRAELEK----LKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA--- 1602
Cdd:TIGR04523 196 llklelllsNLKKKIQKNKSLESQISELKKqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqke 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1603 LRLGETEVTEKCNHIREVKSLLEELSFQK-----GELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN-- 1675
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNse 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1676 -----ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAES 1750
Cdd:TIGR04523 356 senseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1751 RALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAM 1830
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1831 QQQLQEKREAVNSLQEELANVQDHLNLAKQDL--LHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1908
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 1909 NEIEENKLKLVQQEMMFQRLQKERES---EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSK 1970
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKakkENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-778 |
2.15e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 2.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 436 DTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAi 515
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLA- 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 516 dsldskdpkhshmkaqksGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL--EEQLT-EGQIAANEALKKDLEGV 592
Cdd:TIGR02169 248 ------------------SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRvKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 593 ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQeqhEVNASLQQT 672
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAELE---EVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 673 QGDLSAYEAELEarlnlrdaEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGK-AQFSEEKEQENSELHA--- 748
Cdd:TIGR02169 384 RDELKDYREKLE--------KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKiNELEEEKEDKALEIKKqew 455
|
330 340 350
....*....|....*....|....*....|
gi 2462622363 749 KLKHLQDDNNLLKQQLKDFQNHLNHVVDGL 778
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
474-732 |
2.67e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 2.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 474 FKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRL 553
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----------------ERRIAALARRIRALEQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 554 DEILSRIAKETEEIKDLEEQLtegqiaanEALKKDLEGVI-----SGLQEYLGTIKGQATQAQNEcRKLRDEKETLLQRL 628
Cdd:COG4942 79 AALEAELAELEKEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPEDFLDAV-RRLQYLKYLAPARR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 629 TEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRL- 707
Cdd:COG4942 150 EQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALi 229
|
250 260
....*....|....*....|....*
gi 2462622363 708 TQLEQSALQAELEKERQALKNALGK 732
Cdd:COG4942 230 ARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1748-2053 |
2.71e-09 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 62.61 E-value: 2.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1748 AESRALQScVECLSKEKEDLQEKCDIWEKKLAQT-KRVLAAAEENSKME--QSNLEKLELN-----------VRKLQQEL 1813
Cdd:PLN02939 150 ARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQEKIHVEilEEQLEKLRNEllirgateglcVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1814 DQLNRDKLSLHNDISAMQQQLQEKREAVNSLqeelanvqdhLNLAKQDLLHTTKHQDvLLSEQTRLQKDISEWANRFEDC 1893
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAETEERV----------FKLEKERSLLDASLRE-LESKFIVAQEDVSKLSPLQYDC 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1894 QKEE-ETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE----SKLETSKVTLKEQQHQLEKELTDQKSKldQVL 1968
Cdd:PLN02939 298 WWEKvENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKeanvSKFSSYKVELLQQKLKLLEERLQASDH--EIH 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1969 SKVLAAEERVRTLQeeerwcESLEKTLSQTKRQlsereqqlveksgellALQKEADSMRADF----SLLRNQFLTERKKA 2044
Cdd:PLN02939 376 SYIQLYQESIKEFQ------DTLSKLKEESKKR----------------SLEHPADDMPSEFwsriLLLIDGWLLEKKIS 433
|
....*....
gi 2462622363 2045 EKQVASLKE 2053
Cdd:PLN02939 434 NNDAKLLRE 442
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
435-934 |
2.89e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 2.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEA----IQLKKEALDLELQMEKQKQEIAGKQKEIKD 510
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeiEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 511 LQIAIDSLDSKDPKHSHMKaqksGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQiaANEALKKDLE 590
Cdd:PRK03918 271 LKKEIEELEEKVKELKELK----EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE--EKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 591 GVISGLQEYLGTIKGQAtQAQNECRKLRDEKETLLQRLTEVEQERDQLEIvamdaENMRKELAELESALQEQHEVNASLQ 670
Cdd:PRK03918 345 KKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLTPEKLEKEL-----EELEKAKEEIEEEISKITARIGELK 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 671 QTQGDLSAYEAEL----------------EARLNLRDAEANQLKEELEKVTRLTQLEQSA------LQAELEKERQALKN 728
Cdd:PRK03918 419 KEIKELKKAIEELkkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLrkelreLEKVLKKESELIKL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 729 ALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEM-NIHSP 807
Cdd:PRK03918 499 KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELaELLKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 808 SDVLG-KSLADLQKQFSEI---------LARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDK 877
Cdd:PRK03918 579 LEELGfESVEELEERLKELepfyneyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 878 RQHEA---RIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 934
Cdd:PRK03918 659 EEYEElreEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-635 |
3.42e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 3.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI-QLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAID 516
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 517 SLdSKDPKHSHMKAQKSGKEQQLDIMNKQ------------YQQLESRLDEILSRIAKETEEIKDLEEQLT------EGQ 578
Cdd:COG4942 101 AQ-KEELAELLRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEaeraelEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 579 IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQER 635
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
414-930 |
5.39e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.99 E-value: 5.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 414 KKMEPDEQLRNDH-------MNLRGHTPLDTQLED----KEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQ 482
Cdd:TIGR00606 543 DKMDKDEQIRKIKsrhsdelTSLLGYFPNKKQLEDwlhsKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 483 LKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAK 562
Cdd:TIGR00606 623 SYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQS 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 563 ETEEIKDlEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQ-------ER 635
Cdd:TIGR00606 703 KLRLAPD-KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETllgtimpEE 781
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 636 DQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAyeAELEARLNLRDAEANQLKEELEKVTRLTQLEQSAL 715
Cdd:TIGR00606 782 ESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV--QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 716 QA------ELEKERQALKNALGKAQF----SEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVA 785
Cdd:TIGR00606 860 QHlksktnELKSEKLQIGTNLQRRQQfeeqLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 786 A-RVDELRRKLKLGTGEMNihSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEE---- 860
Cdd:TIGR00606 940 QdKVNDIKEKVKNIHGYMK--DIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQerwl 1017
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 861 --------FRQACERALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELE 930
Cdd:TIGR00606 1018 qdnltlrkRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-775 |
6.94e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 6.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE-EAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQI 513
Cdd:TIGR04523 312 LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 514 AIDSLDSKdpkHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEqltegQIAANEALKKDLEGVI 593
Cdd:TIGR04523 392 QINDLESK---IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTR 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 594 SGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQT 672
Cdd:TIGR04523 464 ESLETQLKVLSR-------SINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLtKKISSLKEKIEKLESEKKEK 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 673 QGDLSAYEAE------------LEARLNLRDAEANQLKEELEKVTRlTQLEQSALQAELEKERQALKNALgkaqfsEEKE 740
Cdd:TIGR04523 537 ESKISDLEDElnkddfelkkenLEKEIDEKNKEIEELKQTQKSLKK-KQEEKQELIDQKEKEKKDLIKEI------EEKE 609
|
330 340 350
....*....|....*....|....*....|....*
gi 2462622363 741 QENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVV 775
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1392-2180 |
7.90e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 7.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1392 IVDEIECIEKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL-ERRAQETAVNLVKAD 1470
Cdd:TIGR02169 158 IIDEIAGVAEFDRKKEKALEELEEV-EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1471 QQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEE--------LQKLQKDIEMAERNEDHHLQV 1542
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1543 LKESE-------VLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCN 1615
Cdd:TIGR02169 317 LEDAEerlakleAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1616 HIREVKSLLEELSF---QKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKl 1692
Cdd:TIGR02169 397 LKREINELKRELDRlqeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK- 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1693 qhdQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAEsralqscvecLSKEKEDLQEKCD 1772
Cdd:TIGR02169 476 ---EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ----------LGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1773 IwekklAQTKRVLAAAEENSKMEQSNLEKLE---------LNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1843
Cdd:TIGR02169 543 V-----AAGNRLNNVVVEDDAVAKEAIELLKrrkagratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFK 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1844 -------LQEELANVQDHLNLAKQ-----DLLHTT-------KHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQL 1904
Cdd:TIGR02169 618 yvfgdtlVVEDIEAARRLMGKYRMvtlegELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1905 QVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKE---QQHQLEKELTDQKSKLDQVLSKVLAAEERVRTL 1981
Cdd:TIGR02169 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEleeDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1982 QEEErwcESLEKTLSQTKRQLSEREQQLVEKsgellalqkeadsmradfsllrnqfltERKKAEKQVASLKEALkiQRSQ 2061
Cdd:TIGR02169 778 EEAL---NDLEARLSHSRIPEIQAELSKLEE---------------------------EVSRIEARLREIEQKL--NRLT 825
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2062 LEKNLLMANQKDLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENLpftmne 2141
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL------ 898
|
810 820 830
....*....|....*....|....*....|....*....
gi 2462622363 2142 GPFEEKLNfsqvhimdehwRGEALREKLRHREDRLKAQL 2180
Cdd:TIGR02169 899 RELERKIE-----------ELEAQIEKKRKRLSELKAKL 926
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
435-686 |
1.25e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.46 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI-QLKKEALDLELQMEKQKQEIAgkqKEIKDLQI 513
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdKLQAEIAEAEAEIEERREELG---ERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 514 AIDS-------LDSKDPKhshmkaqksgkeqqlDIMNKQyqqleSRLDEILSRIAKETEEIKDLEEQLTEgQIAANEALK 586
Cdd:COG3883 98 SGGSvsyldvlLGSESFS---------------DFLDRL-----SALSKIADADADLLEELKADKAELEA-KKAELEAKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 587 KDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVN 666
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
250 260
....*....|....*....|
gi 2462622363 667 ASLQQTQGDLSAYEAELEAR 686
Cdd:COG3883 237 AAAAAAAASAAGAGAAGAAG 256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
454-875 |
1.27e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 454 SELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALD------------LELQMEKQKQEIAGKQKEIKDLQIAIDSLDsk 521
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLErlrrerekaeryQALLKEKREYEGYELLKEKEALERQKEAIE-- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 522 dpkhshmkAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL--EEQLT-EGQIAANEALKKDLEGVISGLQE 598
Cdd:TIGR02169 244 --------RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRvKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 599 YLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQEqheVNASLQQTQGDLSA 678
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT---EEYAELKEELEDLRAELEE---VDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 679 YEAELEarlnlrdaeanQLKEELEKVTRltqlEQSALQAELEKerqalknalgkaqfseeKEQENSELHAKLKHLQDDNN 758
Cdd:TIGR02169 390 YREKLE-----------KLKREINELKR----ELDRLQEELQR-----------------LSEELADLNAAIAGIEAKIN 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 759 LLKQQLKDFQNHLNHVVDGLvrpEEVAARVDELRRKLKlgtgemNIHSPSDVLGKSLADLQKQFSEILARSKWERDEaqV 838
Cdd:TIGR02169 438 ELEEEKEDKALEIKKQEWKL---EQLAADLSKYEQELY------DLKEEYDRVEKELSKLQRELAEAEAQARASEER--V 506
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2462622363 839 RERKLQEEMALQQEKLATGQ--------EEFRQACERALEARMNF 875
Cdd:TIGR02169 507 RGGRAVEEVLKASIQGVHGTvaqlgsvgERYATAIEVAAGNRLNN 551
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-658 |
1.45e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.46 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 436 DTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALD-LELQMEKQKQEIAGKQKEIKD---- 510
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDkLQAEIAEAEAEIEERREELGErara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 511 LQIAIDS-------LDSKDPKH--SHMKAQKSGKEQQLDIMNkQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaa 581
Cdd:COG3883 95 LYRSGGSvsyldvlLGSESFSDflDRLSALSKIADADADLLE-ELKADKAELEAKKAELEAKLAELEALKAEL------- 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 582 nEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESA 658
Cdd:COG3883 167 -EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
435-677 |
1.72e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 60.03 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAA----QTRLSELHDEIEKAEQQIlratEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKD 510
Cdd:COG3206 162 LEQNLELRREEARKAleflEEQLPELRKELEEAEAAL----EEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 511 LQIAIDSLDSKDPKHSHMKAQKSGkEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALKKDLE 590
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI--------AALRAQLQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 591 gviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELesaLQEQHEVNASLQ 670
Cdd:COG3206 309 ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESL---LQRLEEARLAEA 382
|
....*..
gi 2462622363 671 QTQGDLS 677
Cdd:COG3206 383 LTVGNVR 389
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
815-1601 |
5.20e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 5.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 815 LADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEA------------RMNFDKRQHEA 882
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaneisRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 883 RIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSD 962
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 963 KL------ATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQaaRDLTRAEAEIELLQNLLRQKGEQFRLEM 1036
Cdd:TIGR02168 390 QLelqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1037 EktgvgtgansqvlEIEKLNETMERQRTEIARLQNVLDLTGSDnKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRG 1116
Cdd:TIGR02168 468 E-------------ELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1117 YWyfmppppsskvsshSSQATKDSGVGLKYSAStpvrkprPGQQDGKEG--SQPPPASGYWVYSPIRSGLHKLFPSRDAD 1194
Cdd:TIGR02168 534 GY--------------EAAIEAALGGRLQAVVV-------ENLNAAKKAiaFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1195 S--GGDSQEESELDDQEEPPFVPPP-GYMMYTVLPDGSpVPQGMALYAPPPPLPNNSRP----LTPGTVVYGpppagapm 1267
Cdd:TIGR02168 593 IlkNIEGFLGVAKDLVKFDPKLRKAlSYLLGGVLVVDD-LDNALELAKKLRPGYRIVTLdgdlVRPGGVITG-------- 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1268 vyGPPPPNFSIpfipmgvlhcnvpehHNLENEVSRLedimqhlkskkreerwmraskrqsEKEMEELHHNIDDLLQEKKS 1347
Cdd:TIGR02168 664 --GSAKTNSSI---------------LERRREIEEL------------------------EEKIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1348 LECEVEELhrTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCT 1427
Cdd:TIGR02168 703 LRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1428 KEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVaakdsd 1507
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI------ 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1508 fqclskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHL 1587
Cdd:TIGR02168 855 --------ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
810
....*....|....
gi 2462622363 1588 LQGSMVQAKADLQE 1601
Cdd:TIGR02168 927 LELRLEGLEVRIDN 940
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
514-745 |
5.66e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.53 E-value: 5.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 514 AIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQiAANEALKKDLEGVI 593
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 594 SGLQE------YLGTIKGQATQAqnecrklrdekeTLLQRL----TEVEQERDQLEIVAMDAENMRKELAELESALQEQH 663
Cdd:COG3883 93 RALYRsggsvsYLDVLLGSESFS------------DFLDRLsalsKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 664 EVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQEN 743
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
..
gi 2462622363 744 SE 745
Cdd:COG3883 241 AA 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-934 |
7.14e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 7.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 259 DRQEAFERFSLEEVERLERDLEKKmIETEELKSKqtrfLEEIKNQDKLNKSLKEEAMLqkqscEELKSDLNTKNELLKQK 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA-ERYQALLKE----KREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 339 TIELTRACQKQYELEQELAfyKIDAKFEPLNyyPSEYAEIdKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEP 418
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE--ELNKKIKDLG--EEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 419 DEQLRNdhmnlrgHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQI------LRAT-EEFKQLEEAI-QLKKEALDL 490
Cdd:TIGR02169 332 DKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELeevdkeFAETrDELKDYREKLeKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 491 E-----LQMEKQKQEIAGKQ--KEIKDLQIAIDSLDS-KDPKHSHMKAQKSGKEQQLDIMNK---QYQQLESRLDEILSR 559
Cdd:TIGR02169 405 KreldrLQEELQRLSEELADlnAAIAGIEAKINELEEeKEDKALEIKKQEWKLEQLAADLSKyeqELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 560 IAKETEEIKDLEEQL------TEGQIAANEALKKDLEGVIsGLQEYLGTIKGQ-----------------------ATQA 610
Cdd:TIGR02169 485 LSKLQRELAEAEAQAraseerVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyataievaagnrlnnvvveddavAKEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 611 QNECRKLRDEKETLLQrLTEVEQERDQLEIVAMDA--------------------------------ENMRKELAELESA 658
Cdd:TIGR02169 564 IELLKRRKAGRATFLP-LNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvediEAARRLMGKYRMV 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 659 LQEQHEVNASLQQTQGDLSAYEAELEARLNLrdAEANQLKEELEKVTRltqlEQSALQAELEKERQALKnalgkaqfseE 738
Cdd:TIGR02169 643 TLEGELFEKSGAMTGGSRAPRGGILFSRSEP--AELQRLRERLEGLKR----ELSSLQSELRRIENRLD----------E 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 739 KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRRKLKLGTGEMnihspsDVLGKSLADL 818
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----------EELEEDLSSLEQEIENVKSEL------KELEARIEEL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 819 QKQFSEI-LARSKWERDEAQVRERKLQEEMALQQEKLATgQEEFRQACERALEARmNFDKRQHEARIQQMENEIHYLQEN 897
Cdd:TIGR02169 771 EEDLHKLeEALNDLEARLSHSRIPEIQAELSKLEEEVSR-IEARLREIEQKLNRL-TLEKEYLEKEIQELQEQRIDLKEQ 848
|
730 740 750
....*....|....*....|....*....|....*..
gi 2462622363 898 LKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 934
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1784-2025 |
8.31e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 56.76 E-value: 8.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1784 VLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLL 1863
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1864 HTTKHQ----------DVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKlklvqqemmfqRLQKERE 1933
Cdd:COG3883 90 ERARALyrsggsvsylDVLLG-----SESFSDFLDRLSALSKIADADADLLEELKADKAELE-----------AKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1934 SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 2013
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|..
gi 2462622363 2014 GELLALQKEADS 2025
Cdd:COG3883 234 AAAAAAAAAAAS 245
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1296-1950 |
9.58e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 9.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKRE--ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV-----QKRQQQKDF 1368
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1369 ID--GNVESLMTEL--EIEKSLKHHEDivdEIECIEKTLLKRRSELREA------------------DRLLAE---AESE 1423
Cdd:pfam15921 316 MRqlSDLESTVSQLrsELREAKRMYED---KIEELEKQLVLANSELTEArterdqfsqesgnlddqlQKLLADlhkREKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1424 LSCTKEKTKNAVEKFTDAKRSL--LQTESDAEELERRAQETAVNLVKAD------QQLRSLQAdakdleqhkikQEEILK 1495
Cdd:pfam15921 393 LSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEcqgqmeRQMAAIQG-----------KNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1496 EINKIVAAKDSDFQCLskkkEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLd 1575
Cdd:pfam15921 462 KVSSLTAQLESTKEML----RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL- 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1576 rqlghKKEELHLLQgsmVQAKAdlqEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeieke 1655
Cdd:pfam15921 537 -----KNEGDHLRN---VQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--------- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1656 eenlqvvlRQMSKHKTELKnildmlqlenhELQGLKLQHDQRVSELEKtqvavleeklelenlqQISQQQKGEIEWQKQL 1735
Cdd:pfam15921 597 --------KEINDRRLELQ-----------EFKILKDKKDAKIRELEA----------------RVSDLELEKVKLVNAG 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1736 LERdKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLaqtkrvlaaaEENSKMEQSNLEKLELNVRKLQQELDQ 1815
Cdd:pfam15921 642 SER-LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF----------RNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1816 LNRDKLSLHND-------ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAN 1888
Cdd:pfam15921 711 TRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 1889 RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRlqKERESEESKLETSkVTLKEQQ 1950
Cdd:pfam15921 791 ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR--QEQESVRLKLQHT-LDVKELQ 849
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
536-744 |
1.16e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 57.33 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 536 EQQLDIMNKQYQQLESRLDEILSR--IAKETEEIKDLEEQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 611
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSEleSQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 612 NEcrklrDEKETLLQRLTEVEQERDQLEIVAMDA----ENMRKELAELESALQEQhevnasLQQTQGDLSAYEAELEARL 687
Cdd:COG3206 261 QS-----PVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQE------AQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 688 NLRDAEANQLKEELEKVTRLtQLEQSALQAELEKERQALKNALGKAQFSEEKEQENS 744
Cdd:COG3206 330 ASLQAQLAQLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
423-1097 |
1.48e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 1.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 423 RNDHMN-LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLE---------- 491
Cdd:PTZ00121 1062 AKAHVGqDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEearkaedark 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 492 -----LQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHmKAQKSGKEQQLDIMNKQYQQLESRLDEILSRI------ 560
Cdd:PTZ00121 1142 aeearKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAARKAEEERKAeearka 1220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 561 --AKETEEIKDLEEQLTEGQIA-------ANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEV 631
Cdd:PTZ00121 1221 edAKKAEAVKKAEEAKKDAEEAkkaeeerNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 632 EQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARlnlrdAEANQLKEELEKVTRLTQLE 711
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA-----ADEAEAAEEKAEAAEKKKEE 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 712 QSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQnhlnhvVDGLVRPEEVAARVDEL 791
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK------ADEAKKKAEEAKKADEA 1449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 792 RRKLKLGTGEMNIHSPSDVLGKSlADLQKQFSEilaRSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACE--RAL 869
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKA-DEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEakKAD 1525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 870 EARMNFDKRQHEARIQQMENEihyLQENLKSMEEIQGLTDL-QLQEADEEKERILAQLRELEKKKKLEDAKSQE--QVFG 946
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKK---KADELKKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEvmKLYE 1602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 947 LDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQE--RAEELQEAERFSR-KAAQAAR----DLTRAEaEIE 1019
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEkkKAEELKKAEEENKiKAAEEAKkaeeDKKKAE-EAK 1681
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 1020 LLQNLLRQKGEQFRLEMEKTgvgtganSQVLEIEKLNETMERQRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRRE 1097
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEA-------KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
606-1035 |
1.49e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 606 QATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESA---LQEQHEVNASLQQTQGDLSAYEAE 682
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 683 LEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQ 762
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 763 QLKDFQNHLnhvvdglvRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQK----------QFSEILARSKWE 832
Cdd:COG4717 228 ELEQLENEL--------EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 833 RDEAQVRERKLQEEMALQQEKLATGQEEFRqaCERALEARMNFDKRQHEARIQQMENEIHYLQENLK---SMEEIQGLTD 909
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 910 LQLQEADEEKERILAQLREL-EKKKKLEDAKSQ-EQVFGLDKELKKLKKAVATSDKLAT--AELTIAKDQLKSLHGTVMK 985
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEEleEELEELEEELEELREELAE 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 986 INQ-----ERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLE 1035
Cdd:COG4717 458 LEAeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1295-1849 |
1.52e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1295 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnve 1374
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1375 slmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESElsctKEKTKNAVEKFTDAKRSLLQTESDAEE 1454
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1455 LER-RAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKdSDFQCLSKKKEKLTEELQKLQKDIEMAE 1533
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGKCPVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1534 R--NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsMVQAKADLQEALRLGETEVT 1611
Cdd:PRK03918 443 RelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEEL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1612 EKCNhiREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEkeeenLQVVLRQMSKHKTELKNILDMLQLENHElqglk 1691
Cdd:PRK03918 521 EKKA--EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-----LEKKLDELEEELAELLKELEELGFESVE----- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1692 lQHDQRVSELEKTQVAVLEEKLElenlqqisqqqKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1771
Cdd:PRK03918 589 -ELEERLKELEPFYNEYLELKDA-----------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1772 DIWE-----KKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdISAMQQQLQEKREAVNSLQE 1846
Cdd:PRK03918 657 SEEEyeelrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKA 735
|
...
gi 2462622363 1847 ELA 1849
Cdd:PRK03918 736 LLK 738
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
505-1097 |
1.81e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 505 QKEIKDLQIAIDSLDSK----DPKHSHMKAQKSGKEQQLDimnkqyqqlesRLDEILSRIAKETEEIKDLEEQLTEGQ-- 578
Cdd:PRK02224 198 EKEEKDLHERLNGLESElaelDEEIERYEEQREQARETRD-----------EADEVLEEHEERREELETLEAEIEDLRet 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 579 IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenmRKELAELESA 658
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL----------RDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 659 LQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrlTQLEQSALQAELEKERQALKNA---LGKAQ- 734
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED----RREEIEELEEEIEELRERFGDApvdLGNAEd 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 735 FSEEKEQENSELHAKLKHLQDDnnllkqqlkdfqnhlnhvvdgLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVlgKS 814
Cdd:PRK02224 413 FLEELREERDELREREAELEAT---------------------LRTARERVEEAEALLEAGKCPECGQPVEGSPHV--ET 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 815 LADLQKQFSEILA-RSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEarmnfdkrQHEARIQQMENEIHY 893
Cdd:PRK02224 470 IEEDRERVEELEAeLEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIA--------ERRETIEEKRERAEE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 894 LQENLKSMEEiqgltdlqlqEADEEKERilAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDklatAELTIAK 973
Cdd:PRK02224 542 LRERAAELEA----------EAEEKREA--AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL----AAIADAE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 974 DQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRA------EAEIELLQNLlRQKGEQFrlemektgvgtgans 1047
Cdd:PRK02224 606 DEIERL--------REKREALAELNDERRERLAEKRERKREleaefdEARIEEARED-KERAEEY--------------- 661
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1048 qvleIEKLNETMERQRTEIARLQNVLdltgsdnkGGFENVLEEIAELRRE 1097
Cdd:PRK02224 662 ----LEQVEEKLDELREERDDLQAEI--------GAVENELEELEELRER 699
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1732-1974 |
2.06e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1732 QKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQ 1811
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1812 ELDQLnRDKLSlhNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQdllhttkhqdvLLSEQTRLQKDISEWANRFE 1891
Cdd:COG4942 98 ELEAQ-KEELA--ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1892 DCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKV 1971
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 2462622363 1972 LAA 1974
Cdd:COG4942 244 PAA 246
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
288-980 |
2.07e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 56.77 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 288 ELKSKQTRFLEEIKNQDKLNKSLKEE-AMLQKQ---SCEELKSDLNTKNELLKQKTIELTRAcqkqyeLEQELAFYKIDA 363
Cdd:pfam12128 266 GYKSDETLIASRQEERQETSAELNQLlRTLDDQwkeKRDELNGELSAADAAVAKDRSELEAL------EDQHGAFLDADI 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 364 kfeplnyyPSEYAEIDKAPDESPYIgkSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNLrgHTPLDTQLEDKE 443
Cdd:pfam12128 340 --------ETAAADQEQLPSWQSEL--ENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGI--KDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 444 KKISAAQTRLSELHDEI-EKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIkdlqiaidslDSKD 522
Cdd:pfam12128 408 RQLAVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERI----------ERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 523 PKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGT 602
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 603 IKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDaENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAE 682
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASE-EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 683 LEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALgkAQFSEEKEQENSELHAKLKHLQDDNNLLKQ 762
Cdd:pfam12128 637 ASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERL--NSLEAQLKQLDKKHQAWLEEQKEQKREART 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 763 QLKDFQNHLNHVVD---GLVRPEEVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILAR-SKWERDEAQV 838
Cdd:pfam12128 715 EKQAYWQVVEGALDaqlALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKiERIAVRRQEV 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 839 RE--RKLQEEMALQQEKLATGQEEFRQACER------ALEARMNFDKRQHEARIQQMENEIHYLQENLKSME-EIQGLTD 909
Cdd:pfam12128 795 LRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRcEMSKLAT 874
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 910 LQL----QEADEEKERILAQLRELEKKKK--LEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLH 980
Cdd:pfam12128 875 LKEdansEQAQGSIGERLAQLEDLKLKRDylSESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLLD 951
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
2.30e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 2.30e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 148 KLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEIEHI-PVWLGKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
491-736 |
2.64e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.22 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 491 ELQMEKQKQEIAGKQKEIKDLQIAIDSLDskdpkhshmkaqksgkeQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDL 570
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQ-----------------AELEELNEEYNELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 571 EEQLTEGQIAANEALK------------------KDLEGVISGLqEYLGTIkgqATQAQNECRKLRDEKETLLQRLTEVE 632
Cdd:COG3883 78 EAEIEERREELGERARalyrsggsvsyldvllgsESFSDFLDRL-SALSKI---ADADADLLEELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 633 QERDQLEIVAMDAENMRKelaELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQ 712
Cdd:COG3883 154 AKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
250 260
....*....|....*....|....
gi 2462622363 713 SALQAELEKERQALKNALGKAQFS 736
Cdd:COG3883 231 AAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1332-2136 |
2.98e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1332 EELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnveslmteleiekslkhheDIVDEIECIEKTLLKRRSELR 1411
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELII--------------------DLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1412 EADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQE 1491
Cdd:pfam02463 212 YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1492 EILKEINKIVAAK-DSDFQCLSKKKEKLTEELQKLQKDIEMAernedhhlqvlKESEVLLQAKRAELEKLKSQVTSQQQE 1570
Cdd:pfam02463 292 AKEEEELKSELLKlERRKVDDEEKLKESEKEKKKAEKELKKE-----------KEEIEELEKELKELEIKREAEEEEEEE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1571 MAVLDRQLGHKKEELHLLQGsmvQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQ 1650
Cdd:pfam02463 361 LEKLQEKLEQLEEELLAKKK---LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEE 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1651 EIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIE 1730
Cdd:pfam02463 438 SIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1731 WQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQ 1810
Cdd:pfam02463 518 DGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1811 QELDQLNRDKLSLHndisAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRF 1890
Cdd:pfam02463 598 EIDPILNLAQLDKA----TLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTK 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1891 EDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKldqVLSK 1970
Cdd:pfam02463 674 ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID---EEEE 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1971 VLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVAS 2050
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2051 LKEALKiqrsQLEKNLLMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELES 2130
Cdd:pfam02463 831 KEEELE----ELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES 906
|
....*.
gi 2462622363 2131 LKENLP 2136
Cdd:pfam02463 907 QKLNLL 912
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1511-2133 |
4.10e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.75 E-value: 4.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1511 LSKKKEKLTEELQKLQKDIEMAERNEDHHLQVL----KESEVLLQAKRAELEKLKSQVTSQQQEMAvLDRQLGHKKEELH 1586
Cdd:TIGR00618 192 LHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLekelKHLREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1587 LLQgSMVQAKADLQEALrlgetEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQM 1666
Cdd:TIGR00618 271 ELR-AQEAVLEETQERI-----NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1667 SKHKT-------------ELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQK 1733
Cdd:TIGR00618 345 RLLQTlhsqeihirdaheVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1734 QLLERDKREI---ERMTAESRALQSCVECLSKEKEDLQE---KCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVR 1807
Cdd:TIGR00618 425 QLAHAKKQQElqqRYAELCAAAITCTAQCEKLEKIHLQEsaqSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1808 KLQQELDQLNRdKLSLHNDISAMQQQLQEKREAVNSLQEELANVQdhlnlakQDLLHTTKHQDVLLSEQTRLQKDISEWA 1887
Cdd:TIGR00618 505 PLCGSCIHPNP-ARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVY-------HQLTSERKQRASLKEQMQEIQQSFSILT 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1888 NRFEDCQKEEETKQQQLQVLQNEIEENklklvqqemmfqrlQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQV 1967
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRLQDLTEKL--------------SEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1968 LSKVLAAEERVRTLQEEERwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQfLTERKKAEKQ 2047
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVR--EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL-ETHIEEYDRE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2048 VASLKEALKIQRSQLEKNLLMANQ--KDLERRQMEISDAmRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLE 2125
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQslKELMHQARTVLKA-RTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
....*...
gi 2462622363 2126 GELESLKE 2133
Cdd:TIGR00618 799 HLLKTLEA 806
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
4.56e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.67 E-value: 4.56e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 126 KLEVLNLSYNLIGKIEK--LDKLLKLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
536-909 |
4.83e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 536 EQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTE-GQIAANEALKKDLEGVISGLQEyLGTIKGQATQAQNEC 614
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASAEREIAE-LEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 615 RKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTqgdlsAYEAELEARL--NLRDA 692
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL-----ELRALLEERFaaALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 693 EANQLKEELEKvtrltqlEQSALQAELEKERQALKNALgkAQFSEEKEQENSELHAKLkhlqDDNNllkqqlkDFQNHLN 772
Cdd:COG4913 763 VERELRENLEE-------RIDALRARLNRAEEELERAM--RAFNREWPAETADLDADL----ESLP-------EYLALLD 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 773 HVV-DGLVRPEEvaarvdELRRKLKlgtgEMNIHSPSDVLGK---SLADLQKQFSEI---LARSKWERDEA---QVRERK 842
Cdd:COG4913 823 RLEeDGLPEYEE------RFKELLN----ENSIEFVADLLSKlrrAIREIKERIDPLndsLKRIPFGPGRYlrlEARPRP 892
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622363 843 LQEEmalqqeklatgqEEFRQACERALEARMNFDKRQHEARIQQMENEIHYL--QENLKSMEEIQGLTD 909
Cdd:COG4913 893 DPEV------------REFRQELRAVTSGASLFDEELSEARFAALKRLIERLrsEEEESDRRWRARVLD 949
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-868 |
5.21e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQL-----KKEALDLEL--------QMEKQKQEIAGK 504
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplyqELEALEAELaelperleELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 505 QKEIKDLQIAIDSLDSKdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQiaaNEA 584
Cdd:COG4717 162 EEELEELEAELAELQEE--LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE---NEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 585 LKKDLEGVISGLQEYLGTIKGQATQAQnecrkLRDEKETLLQRLTEVEQERdqLEIVAMDAENMRKELAELESALQEQHE 664
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLG-----LGGSLLSLILTIAGVLFLV--LGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 665 VNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKV-TRLTQLEQSALQAELEKERQALKNALGKAQFSEEKE-QE 742
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELqELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 743 NSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVrPEEVAARVDELRRKLKLGTGEMnihspsDVLGKSLADLQKQF 822
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEEL------EELREELAELEAEL 462
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2462622363 823 SEILARSKWERDEAQVRERKLQ-EEMALQQEKLATGQEEFRQACERA 868
Cdd:COG4717 463 EQLEEDGELAELLQELEELKAElRELAEEWAALKLALELLEEAREEY 509
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
628-941 |
6.40e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 6.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 628 LTEVEQERDQLEIVAMDAENMRKELAELESA-----LQEQHEVNASLQQTQGDLSAYEAELEAR------LNLRDAEANQ 696
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREYegyelLKEKEALERQKEAIERQLASLEEELEKLteeiseLEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 697 LKEEL-EKVTRLTQLEQSALQAELEKERQALKNALGKAqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvv 775
Cdd:TIGR02169 273 LLEELnKKIKDLGEEEQLRVKEKIGELEAEIASLERSI---AEKERELEDAEERLAKLEAEIDKLLAEIEELEREI---- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 776 dglvrpEEVAARVDELRRKLKlgtgemnihSPSDVLGKSLADLQkQFSEILARSKWERDEAQVRERKLQEEMALQQEKLA 855
Cdd:TIGR02169 346 ------EEERKRRDKLTEEYA---------ELKEELEDLRAELE-EVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 856 TGQEEFRQACERALEARMnfDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEkkKKL 935
Cdd:TIGR02169 410 RLQEELQRLSEELADLNA--AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE--KEL 485
|
....*.
gi 2462622363 936 EDAKSQ 941
Cdd:TIGR02169 486 SKLQRE 491
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1292-1705 |
7.59e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.73 E-value: 7.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1292 EHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQK-----RQ 1363
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdekLLDEKKQFEKIAEELKGKEQElifllQA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1364 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1443
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE---LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1444 SLLQTESDAEELErRAQETAVNLVKADQQLRSLQADAKDLEQHKI-KQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1522
Cdd:pfam05483 525 CKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1523 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVL----DRQLGHKKEELHLLQGSMVQAKAD 1598
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1599 LQEALRLgETEVTEKCNH-IREVKSLLEELSFQKGELnvqISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNIL 1677
Cdd:pfam05483 684 ADEAVKL-QKEIDKRCQHkIAEMVALMEKHKHQYDKI---IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK 759
|
410 420
....*....|....*....|....*...
gi 2462622363 1678 DMLQLENHELQGLKLQHDQRVSELEKTQ 1705
Cdd:pfam05483 760 KQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1296-1993 |
8.39e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 8.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnves 1375
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK-------------- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1376 lmteleIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTESDAEEL 1455
Cdd:PRK03918 226 ------LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI----EELKKEIEELEEKVKELKELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1456 ERRAQEtavnLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERn 1535
Cdd:PRK03918 296 IKLSEF----YEEYLDELREIEKRLSRLEEEINGIEERIKELEE----KEERLEELKKKLKELEKRLEELEERHELYEE- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1536 edhhlqvlkesevlLQAKRAELEKLKSQVTsqqqemavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCN 1615
Cdd:PRK03918 367 --------------AKAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1616 HIREVKSLLEELSFQKGELNVQISErktqltlikqEIEKEEENLqvvlrqMSKHKTELKNILDMLQLENHELQGLKlqhd 1695
Cdd:PRK03918 420 EIKELKKAIEELKKAKGKCPVCGRE----------LTEEHRKEL------LEEYTAELKRIEKELKEIEEKERKLR---- 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1696 QRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcdiwe 1775
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL----- 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1776 kklaqtkrvlaaaeenskmeQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKREAVNSLQEelanvqdh 1854
Cdd:PRK03918 555 --------------------KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLE-------- 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1855 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQvlQNEIEENKLKLVQQEMMFQRLQKERES 1934
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE 684
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 1935 EESKLETSKVTLKEQQHQLE--KELTDQKSKLDQVLSKVLAAEERVRTLQEEERwCESLEK 1993
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALERVEELREKVKKYKALLK-ERALSK 744
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
261-1074 |
9.28e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 9.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 261 QEAFERFsLEEVERLERDLEKKMIETEELKSKQTRFLEE--IKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELlkQK 338
Cdd:pfam15921 73 KEHIERV-LEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL--QN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 339 TIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEIdkapdespyigksrykrnmfatESYIIDSAQAVQiKKMEP 418
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI----------------------RSILVDFEEASG-KKIYE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 419 DEQLRNDHMNLRGhtpldtqledkekkiSAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALdLELQMEKQK 498
Cdd:pfam15921 207 HDSMSTMHFRSLG---------------SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL-LQQHQDRIE 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 499 QEIAGKQKEIKDLQiaidsldskdPKHSHMKAQKSGKEQQLDIMNKQ-------YQQLESRLDEILSRIAKETEEIKDLE 571
Cdd:pfam15921 271 QLISEHEVEITGLT----------EKASSARSQANSIQSQLEIIQEQarnqnsmYMRQLSDLESTVSQLRSELREAKRMY 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 572 EQLTEgqiaaneALKKDLEGVISGLQEylgtIKGQATQAQNECRKLRDEKETLLQRLTEVEQE-------------RDQL 638
Cdd:pfam15921 341 EDKIE-------ELEKQLVLANSELTE----ARTERDQFSQESGNLDDQLQKLLADLHKREKElslekeqnkrlwdRDTG 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 639 EIVAMDaeNMRKELaelesalqeqHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLT-QLEQSA-LQ 716
Cdd:pfam15921 410 NSITID--HLRREL----------DDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTaQLESTKeML 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 717 AELEKERQALKNALGKAQFS--------EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVvdglvrpEEVAARV 788
Cdd:pfam15921 478 RKVVEELTAKKMTLESSERTvsdltaslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL-------RNVQTEC 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 789 DELRRKLklgtgemnihSPSDVLGKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLatgqEEFRqacerA 868
Cdd:pfam15921 551 EALKLQM----------AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL----QEFK-----I 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 869 LEARMNFDKRQHEARIQQMENE----IHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQv 944
Cdd:pfam15921 612 LKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM- 690
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 945 fgldkelKKLKKAVATSDKLATAELTIAKDQLKSLHGT-------VMKINQERAEELQEAERFSRKAAQAARDLTRAEAE 1017
Cdd:pfam15921 691 -------ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE 763
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 1018 IELLqnllrqKGEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQRTEIARLQNVLD 1074
Cdd:pfam15921 764 KHFL------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1775-2135 |
1.04e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1775 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDH 1854
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1855 L-NLAKQDLLHTTKHQDV--LLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQR---L 1928
Cdd:TIGR04523 203 LsNLKKKIQKNKSLESQIseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkK 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1929 QKERESEESKLETSKVTLKEQQHQ-----LEKELTDQKSKLDQVLSKVLAAEERVRTLQEEerwCESLEKTLSQTKRQLS 2003
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNKIISQLNEQ---ISQLKKELTNSESENS 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2004 EREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEA-LKIQRSQLEKNLLMANQKDLERRQMEIS 2082
Cdd:TIGR04523 360 EKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKdEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 2083 DAMRTLKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENL 2135
Cdd:TIGR04523 440 SEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1694-2178 |
1.10e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1694 HDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqekcdi 1773
Cdd:PRK02224 246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL------ 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1774 wEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQD 1853
Cdd:PRK02224 320 -EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1854 HLNLAKQDLLHTTKHQDVLLSEQTRLQKDIsewanrfedcqKEEETKqqqLQVLQNEIEENklklvqqemmfQRLQKE-- 1931
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELRERE-----------AELEAT---LRTARERVEEA-----------EALLEAgk 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1932 -----RESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaeERVRTLQEEERWCESLEKTLSQTKRQLSERE 2006
Cdd:PRK02224 454 cpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL----ERAEDLVEAEDRIERLEERREDLEELIAERR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2007 QQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEK---QVASL---KEALKIQRSQLEK-----NLLMANQKDLE 2075
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEareEVAELnskLAELKERIESLERirtllAAIADAEDEIE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2076 RRQMEisdamRTLKSEVKDEIRTSLKNLNQFLPELPAD-----LEAILERNENLEGELESLKENLPFTMNEgpfEEKLNF 2150
Cdd:PRK02224 610 RLREK-----REALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEKLDELREE---RDDLQA 681
|
490 500
....*....|....*....|....*...
gi 2462622363 2151 SQVHIMDEHWRGEALREKLRHREDRLKA 2178
Cdd:PRK02224 682 EIGAVENELEELEELRERREALENRVEA 709
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-717 |
1.19e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.19 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLE--LQMEKQKQEIAGKQKEIKDLQIAIDSL 518
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLnlLADETLADRVEEIREQLDEAEEAKRFV 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 519 DSKDPKHSHMKAQKS---GKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIK--------DLEEQLTEGQiAANEALKK 587
Cdd:PRK04863 914 QQHGNALAQLEPIVSvlqSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrrahfsyeDAAEMLAKNS-DLNEKLRQ 992
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 588 DLEgvisGLQEYLGTIKGQATQAQNECRK-------LRDEKETLLQRLTEVEQERDQLEIVAmdAENMRKELAELESALQ 660
Cdd:PRK04863 993 RLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVPA--DSGAEERARARRDELH 1066
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 661 EQhevnasLQQTQGDLSAyeaeLEARLNLRDAEANQLKEELEKVTR-LTQLEQSALQA 717
Cdd:PRK04863 1067 AR------LSANRSRRNQ----LEKQLTFCEAEMDNLTKKLRKLERdYHEMREQVVNA 1114
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1293-2052 |
1.21e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.03 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1293 HHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKK----SLECEVEELHRTVQKRQQQKDF 1368
Cdd:pfam01576 35 HQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEersqQLQNEKKKMQQHIQDLEEQLDE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1369 IDGNVESLMTE-LEIEKSLKHHEDIVDEIECIEKTLLKRRSELRE-----ADRLLAEAESELSCTKEKTKNAVeKFTDAK 1442
Cdd:pfam01576 115 EEAARQKLQLEkVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEErisefTSNLAEEEEKAKSLSKLKNKHEA-MISDLE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1443 RSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEEL 1522
Cdd:pfam01576 194 ERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQI 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1523 QKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA 1602
Cdd:pfam01576 274 SELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1603 LRLGETEVTEKCNHIREVKSLLEE----LSFQKGELNVQI---SERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKN 1675
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKakqaLESENAELQAELrtlQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1676 ILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQS 1755
Cdd:pfam01576 434 KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1756 CVEclsKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ 1835
Cdd:pfam01576 514 NVE---RQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLD 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1836 EKREAVNSLQEelanvqdhlnlaKQdllhttKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENK 1915
Cdd:pfam01576 591 HQRQLVSNLEK------------KQ------KKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAK 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1916 LKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaEERVRTLQEEERWCESLEKTL 1995
Cdd:pfam01576 653 EEL-------ERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQL---EELEDELQATEDAKLRLEVNM 722
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 1996 ----SQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLK 2052
Cdd:pfam01576 723 qalkAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELE 783
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1399-1610 |
1.27e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1399 IEKTLLKRRSELREADRLLAE--AESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSL 1476
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1477 QADA--KDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEdhhLQVLKESEVLLQAKR 1554
Cdd:COG3206 260 LQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 1555 AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKadLQEALRLGETEV 1610
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRV 390
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1115 |
1.37e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 350 YELEQElafykidakfeplnyypseyaeidkapDESPYIGKSRYKRNMFATESYIID-SAQAVQIKKMEPDEQLRNDHMN 428
Cdd:pfam02463 246 LRDEQE---------------------------EIESSKQEIEKEEEKLAQVLKENKeEEKEKKLQEEELKLLAKEEEEL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 429 LRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQL----KKEALDLELQMEKQKQEIAGK 504
Cdd:pfam02463 299 KSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAeeeeEEELEKLQEKLEQLEEELLAK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 505 QKEIKDLQIAIDSLDSKdpKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEA 584
Cdd:pfam02463 379 KKLESERLSSAAKLKEE--ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQ 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 585 LKKDLEGVISGLQEYlgtikgqatqaqnecrKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHE 664
Cdd:pfam02463 457 ELKLLKDELELKKSE----------------DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 665 VNaSLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrltqleQSALQAELEKERQALKNALGKAQFSEEKEQENS 744
Cdd:pfam02463 521 GG-RIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD--------EVEERQKLVRALTELPLGARKLRLLIPKLKLPL 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 745 ELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGTGEMNIHSpSDVLGKSLADLQKQFSE 824
Cdd:pfam02463 592 KSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVS-LEEGLAEKSEVKASLSE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 825 ILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACER--ALEARMNFDKRQHEARIQQMENEIHYLQENLKSME 902
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKklKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 903 EIQGLTDLQLQEADEEKERILAQ-LRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHG 981
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSLKEkELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 982 TVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEKTGvgtGANSQVLEIEKLNETMER 1061
Cdd:pfam02463 831 KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELE---SKEEKEKEEKKELEEESQ 907
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 1062 QRTEIARLQNVLDLTGSDNKGGFENVLEEIAELRREVSYQNDYISSMADPFKRR 1115
Cdd:pfam02463 908 KLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1329-2090 |
1.39e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1329 KEMEEL--HHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESL----MTELEIEKSLKHHEDIVDEIECIEKT 1402
Cdd:PTZ00121 1027 EKIEELteYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYkdfdFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1403 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSllqTESDAEELERRAQET-AVNLVKADQQLRSLQADAK 1481
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA---EDAKRVEIARKAEDArKAEEARKAEDAKKAEAARK 1183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1482 DLEQHKIKQEEILKEINKIVAAKDSDfqclskkKEKLTEELQKLQ--KDIEMAERNEdhhlQVLKESEvllQAKRAELEK 1559
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAE-------EERKAEEARKAEdaKKAEAVKKAE----EAKKDAE---EAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1560 LKSQVTSQQQEMAV--LDRQLGHKKEELHllQGSMVQAKADLQEALRLGETEVTEKCNHIR----------EVKSLLEEL 1627
Cdd:PTZ00121 1250 NNEEIRKFEEARMAhfARRQAAIKAEEAR--KADELKKAEEKKKADEAKKAEEKKKADEAKkkaeeakkadEAKKKAEEA 1327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1628 SFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMS---KHKTELKNILDMLQLENHE------LQGLKLQHDQRV 1698
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaeKKKEEAKKKADAAKKKAEEkkkadeAKKKAEEDKKKA 1407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1699 SELEKTQVAVLEEKLELENLQQI--SQQQKGEIEWQKQLLERDKREIERMTAES---RALQSCVECLSKEKEDLQEKCDI 1773
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEakkKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1774 WEKKLAQTKRvlaAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQ----EELA 1849
Cdd:PTZ00121 1488 AKKKAEEAKK---KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKK 1564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1850 NVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDI----SEWANRFEDCQKEEETKQQQLQVLQneiEENKLKLVQQEMMF 1925
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMklyeEEKKMKAEEAKKAEEAKIKAEELKK---AEEEKKKVEQLKKK 1641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1926 QRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSER 2005
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2006 EQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIqRSQLEKNLLMANQKDLERRQMEISDAM 2085
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI-RKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
....*
gi 2462622363 2086 RTLKS 2090
Cdd:PTZ00121 1801 KDIFD 1805
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-793 |
1.66e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.81 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 427 MNLRGHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEAL--------------DLEL 492
Cdd:PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqqekieryqadleELEE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 493 QMEKQKQEIAGKQKEIKDLQI----AIDSLDSkdpkhshMKAQKSGKEQQLDIMNK---QYQQLESRLDEILSRIAKETE 565
Cdd:PRK04863 363 RLEEQNEVVEEADEQQEENEAraeaAEEEVDE-------LKSQLADYQQALDVQQTraiQYQQAVQALERAKQLCGLPDL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 566 EIKDLEEQLTEGQIAANEALKK--DLEGVISGLQEylgtIKGQATQAQNECRKLRDE--KETLLQRLTEVEQERDQLEIV 641
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQEATEEllSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEvsRSEAWDVARELLRRLREQRHL 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 642 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSA---YEAELEARLNLRDAEANQLKEELEKVtRLTQLEQSALQAE 718
Cdd:PRK04863 512 AEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKnldDEDELEQLQEELEARLESLSESVSEA-RERRMALRQQLEQ 590
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622363 719 LEKERQALknalgkaqfsEEKEQENSELHAKLKHLQD---DNNLLKQQLKDF-QNHLNHVVDGLVRPEEVAARVDELRR 793
Cdd:PRK04863 591 LQARIQRL----------AARAPAWLAAQDALARLREqsgEEFEDSQDVTEYmQQLLERERELTVERDELAARKQALDE 659
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
618-941 |
1.76e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.81 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 618 RDEKETLLQRLTEVEQE----RDQLEIVAMDAENMRKELAEL---ESALQEQHE--------VNASLQQT------QGDL 676
Cdd:PRK04863 278 ANERRVHLEEALELRRElytsRRQLAAEQYRLVEMARELAELneaESDLEQDYQaasdhlnlVQTALRQQekieryQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 677 SAYEAELEARLNLRdAEANQLKEELEKVTRLTQLEQSALQAELEKERQAL-------------KNALGKAQ-------FS 736
Cdd:PRK04863 358 EELEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraiqyqqaVQALERAKqlcglpdLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 737 EEKEQE-NSELHAKLKHLQDDNNLLKQQLKDFQNHLNH----------VVDGLVRPEE----------------VAARVD 789
Cdd:PRK04863 437 ADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfeqayqlvrkIAGEVSRSEAwdvarellrrlreqrhLAEQLQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 790 ELRRKLKLGTGEMNIHspsdvlgkslADLQKQFSEILARSKWERDEAQVRERkLQEEmalQQEKLATGQEEFRQACERAL 869
Cdd:PRK04863 517 QLRMRLSELEQRLRQQ----------QRAERLLAEFCKRLGKNLDDEDELEQ-LQEE---LEARLESLSESVSEARERRM 582
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 870 EARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLREL-EKKKKLEDAKSQ 941
Cdd:PRK04863 583 ALRQQLE--QLQARIQRLAArapAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELtVERDELAARKQA 656
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
458-1029 |
1.92e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 458 DEIEKAEQQILRATEEFKQLEEAIQ--LKKEAlDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHS-------HM 528
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEkfIKRTE-NIEELIKEKEKELEEVLREINEISSELPELREELEKLEkevkeleEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 529 KAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaNEALKKDLEGVISgLQEYLGTIKGQAT 608
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-----LKELKEKAEEYIK-LSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 609 QAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELES---ALQEQHEVNASLQQTQGDLSAYEAE-LE 684
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKKRLTGLTPEkLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 685 ARLNLRDAEANQLKEELEKVT-RLTQLEQSAlqAELEKERQALKNALGK-----AQFSEEKEQE-NSELHAKLKHLQDDN 757
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITaRIGELKKEI--KELKKAIEELKKAKGKcpvcgRELTEEHRKElLEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 758 NLLKQQLKDFQNHLNHVVDGLVRPEEVAA--RVDELRRKLKLGTGEMNIHSPSDVlGKSLADLQKQFSEILARSKWERDE 835
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKlkELAEQLKELEEKLKKYNLEELEKK-AEEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 836 AQvRERKLQEEMALQQEKLATGQEEfRQACERALEARMNFDKRQHEARIQQME------NEIHYLQENLKSMEEIQGLTD 909
Cdd:PRK03918 548 LE-KLEELKKKLAELEKKLDELEEE-LAELLKELEELGFESVEELEERLKELEpfyneyLELKDAEKELEREEKELKKLE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 910 LQLQEADEEKERILAQLRELEKK-KKLEDAKSQEQVFGLDKELKKLKKAVATsdklATAELTIAKDQLKSLHGTVMKINQ 988
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKElEELEKKYSEEEYEELREEYLELSRELAG----LRAELEELEKRREEIKKTLEKLKE 701
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2462622363 989 ERaEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKG 1029
Cdd:PRK03918 702 EL-EEREKAKKELEKLEKALERVEELREKVKKYKALLKERA 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1513-2090 |
1.94e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1513 KKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVtsqqQEMAVLDRQLGHKKEELHLLQGSM 1592
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1593 VQAKADLQEalrlgetevTEKcnHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeeNLQVVLRQMSKHKTE 1672
Cdd:PRK03918 255 RKLEEKIRE---------LEE--RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-----EYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1673 LKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMtaesra 1752
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE------ 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1753 lqscVECLSKEKEDLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL--SLHNDISAM 1830
Cdd:PRK03918 393 ----LEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1831 QQQLQEKREAVNSLQEELANVQDHLNLAKQdLLHTTKHQDVLLSEQTRLQK----DISEWANRFEDCQKEEETKQQQLQV 1906
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1907 LQNEIEENKLklvqqemmfqrLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1986
Cdd:PRK03918 544 LKKELEKLEE-----------LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1987 WCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERK-KAEKQVASLKEALKIQRSQLEKn 2065
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREE- 691
|
570 580
....*....|....*....|....*
gi 2462622363 2066 lLMANQKDLERRQMEISDAMRTLKS 2090
Cdd:PRK03918 692 -IKKTLEKLKEELEEREKAKKELEK 715
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1418-1607 |
2.24e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1418 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKE- 1496
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1497 -------------INKIVAAKD-SDF-------QCLSKKKEKLTEELQKLQKDIEMAERNedhhlqvLKESEVLLQAKRA 1555
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 1556 ELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGE 1607
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1296-1896 |
2.31e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1375
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1376 LmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVEK-----------FTDAKRS 1444
Cdd:TIGR02169 446 K--ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEErvrggraveevLKASIQG 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1445 LLQTESDAEELERRAQ----------------ETAVNLVKADQQLRSLQAD-AKDLEQHKIKQEEILKEINKIVAAKDS- 1506
Cdd:TIGR02169 523 VHGTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAGrATFLPLNKMRDERRDLSILSEDGVIGFa 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1507 -DFQCLSKKKEKLTEELQK---LQKDIEMAERNEDHHLQVLKESEVL----------LQAKRAEL--EKLKSQVTSQQQE 1570
Cdd:TIGR02169 603 vDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKYRMVTLEGELFeksgamtggsRAPRGGILfsRSEPAELQRLRER 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1571 MAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRlgetEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQ 1650
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASR----KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1651 EIEKEEENLQVVLRQMSKHKTELKNILDMLQLE-----NHELQGLKLQH---DQRVSELEKTQVAVLEEKLELENLQQIS 1722
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVsriEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1723 QQQKGEIEWQK----QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSN 1798
Cdd:TIGR02169 839 QEQRIDLKEQIksieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1799 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ--QQLQEKREAVnslQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQ 1876
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRV---EEEIRALEPVNMLAIQEYEEVLKRLDELKEKR 995
|
650 660
....*....|....*....|
gi 2462622363 1877 TRLQKDISEWANRFEDCQKE 1896
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKK 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1328-1853 |
2.46e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1328 EKEMEELHHNIDDLLQEKKSLECEVEELH----RTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTL 1403
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEeqreQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1404 LKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLlqtESDAEELERRAQETAVNLVKADQQLRSLQADAKDL 1483
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1484 EQHKIKQEEILKEInkivaakDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQ 1563
Cdd:PRK02224 355 EERAEELREEAAEL-------ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1564 VTSQQQEMAVLDRQLgHKKEELhLLQGSMVQAKADLQEALRLGETEvtEKCNHIREVKSLLEELSFQKGELNVQIsERKT 1643
Cdd:PRK02224 428 EAELEATLRTARERV-EEAEAL-LEAGKCPECGQPVEGSPHVETIE--EDRERVEELEAELEDLEEEVEEVEERL-ERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1644 QLTLIKQEIEKEEENLQVVLRQMSKHKTELKNilDMLQLEnhELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQ 1723
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEE--KRERAE--ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1724 QQKGEIEWQKQLLERdkreIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLA---QTKRVLAAAEENSKME--QSN 1798
Cdd:PRK02224 579 SKLAELKERIESLER----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAekrERKRELEAEFDEARIEeaRED 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 1799 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQ------QQLQEKREAVNSLQEELANVQD 1853
Cdd:PRK02224 655 KERAEEYLEQVEEKLDELREERDDLQAEIGAVEneleelEELRERREALENRVEALEALYD 715
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
462-1071 |
2.50e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 462 KAEQQILRATEEFKQLEEAiqlKKEALDLELQMEkQKQEIAGKQKEIKDLQIAIDSLDSKDPKHSHMKAQKsgkeqqldi 541
Cdd:COG4913 222 DTFEAADALVEHFDDLERA---HEALEDAREQIE-LLEPIRELAERYAAARERLAELEYLRAALRLWFAQR--------- 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 542 mnkQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaanealkkdLEGVISGLQEYLGTIKGQA-TQAQNECRKLRDE 620
Cdd:COG4913 289 ---RLELLEAELEELRAELARLEAELERLEARLDA------------LREELDELEAQIRGNGGDRlEQLEREIERLERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 621 KETLLQRLTEVEQerdQLEIVAMDAENMRKELAELESALQEQhevnaslqqtQGDLSAYEAELEARLNLRDAEANQLKEE 700
Cdd:COG4913 354 LEERERRRARLEA---LLAALGLPLPASAEEFAALRAEAAAL----------LEALEEELEALEEALAEAEAALRDLRRE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 701 LEKVTR-LTQLEQ--SALQAELEKERQALKNALGKAQfseekeqenSELH--AKLKHLQDDNnllkqqlKDFQNHLNHVV 775
Cdd:COG4913 421 LRELEAeIASLERrkSNIPARLLALRDALAEALGLDE---------AELPfvGELIEVRPEE-------ERWRGAIERVL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 776 DG-----LVRPE---EVAARVDELRRKLKLGTGEMNIHSPSDVLGKSLADlqkqfsEILARSKWERDEAQVR-ERKLQEE 846
Cdd:COG4913 485 GGfaltlLVPPEhyaAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SLAGKLDFKPHPFRAWlEAELGRR 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 847 MALQQeklATGQEEFRQAcERAL--EARMNFDKRQHEARIQQMENEIHYL-QENLKSMEEIQGltdlQLQEADEEKERIL 923
Cdd:COG4913 559 FDYVC---VDSPEELRRH-PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEA----ELAELEEELAEAE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 924 AQLRELEKKKK-LEDAKSQEQVFGLDKELKKLKKAVATsdklATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSR 1002
Cdd:COG4913 631 ERLEALEAELDaLQERREALQRLAEYSWDEIDVASAER----EIAELEAELERLDASSDDLAALEEQLEELEAELEELEE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1003 KAAQAARDLTRAEAEIELLQNLLRQK-------------------GEQFRLEMEKTGVGTGANSQVLEIEKLNETMERQR 1063
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEELDELqdrleaaedlarlelrallEERFAAALGDAVERELRENLEERIDALRARLNRAE 786
|
....*...
gi 2462622363 1064 TEIARLQN 1071
Cdd:COG4913 787 EELERAMR 794
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
438-938 |
2.68e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDS 517
Cdd:PRK01156 198 ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 518 LDSKDPKHSHMKAQKSGKEQQLDIMNKQyqQLESrLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK-----DLEGV 592
Cdd:PRK01156 278 LEERHMKIINDPVYKNRNYINDYFKYKN--DIEN-KKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKksrydDLNNQ 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 593 ISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQerdQLEIVAMDAENMRKELAELESALQEQHEVNASLQQT 672
Cdd:PRK01156 355 ILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISE---ILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 673 QGDLSAYEAELEARLNLRDAE------ANQLKEE-LEKVTRLTQLEQSALQAELEK-ERQALKNALGKAQFSEEKEQENS 744
Cdd:PRK01156 432 IRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEkSNHIINHYNEKKSRLEEKIREiEIEVKDIDEKIVDLKKRKEYLES 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 745 ElhaKLKHLQDDNNLLKQ---QLKDFQNHLNHVVDGLVRPEEVAAR-----VDELRRKLKLGTGEM---------NIHSP 807
Cdd:PRK01156 512 E---EINKSINEYNKIESaraDLEDIKIKINELKDKHDKYEEIKNRykslkLEDLDSKRTSWLNALavislidieTNRSR 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 808 SDVLGKSLADLQKQFSEILAR---------SKWERDEAQVR----ERKLQEEMALQQEKLATGQEEFRQacERALEARMN 874
Cdd:PRK01156 589 SNEIKKQLNDLESRLQEIEIGfpddksyidKSIREIENEANnlnnKYNEIQENKILIEKLRGKIDNYKK--QIAEIDSII 666
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 875 FDKRQHEARIQQMENEIHY----LQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDA 938
Cdd:PRK01156 667 PDLKEITSRINDIEDNLKKsrkaLDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKA 734
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1500-2133 |
3.24e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1500 IVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLG 1579
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1580 HKKEELHLLQGSMVQAK---ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1656
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1657 ENLQVVLRQMSKHKTELKNILDMLQLENH---ELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQK 1733
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1734 QLLERDKREIERMTAESRALQSCVECLSKEKEDL-QEKCDIWEKKLaqtKRVLAAAEENSKMEQSNLEKLELNVRKLQQE 1812
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnNQKEQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1813 LDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEElanvqdhlnlaKQDLLHTTKHqdvLLSEQTRLQKDISEWANRFED 1892
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE-----------NQSYKQEIKN---LESQINDLESKIQNQEKLNQQ 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1893 CQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEE---SKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS 1969
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1970 KVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQL----VEKSGELLALQKEADSMraDFSLLRNQFLTERKKAE 2045
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLesekKEKESKISDLEDELNKD--DFELKKENLEKEIDEKN 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2046 KQVASLKEalkiqrsqleknllmaNQKDLERRQMEISDAMRTLKSEVKDeIRTSLKNLNQFLPELPADLEAILERNENLE 2125
Cdd:TIGR04523 568 KEIEELKQ----------------TQKSLKKKQEEKQELIDQKEKEKKD-LIKEIEEKEKKISSLEKELEKAKKENEKLS 630
|
....*...
gi 2462622363 2126 GELESLKE 2133
Cdd:TIGR04523 631 SIIKNIKS 638
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
480-749 |
3.57e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.36 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 480 AIQLKKEALDLELQMEKQKQEIAgkQKEIKD-LQIAIDSLDskDPKHSHMKAQksgkeqqldimnkQYQQ----LESRLD 554
Cdd:PRK10929 20 ATAPDEKQITQELEQAKAAKTPA--QAEIVEaLQSALNWLE--ERKGSLERAK-------------QYQQvidnFPKLSA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 555 EILSRIAKETEEIKDLEEQLTegqiaaNEALKKDLEGVISGLQEylgtIKGQATQAQNECRKLRDEKETLLQRLTEVeqe 634
Cdd:PRK10929 83 ELRQQLNNERDEPRSVPPNMS------TDALEQEILQVSSQLLE----KSRQAQQEQDRAREISDSLSQLPQQQTEA--- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 635 rdqleivamdaenmRKELAELESALQEQHEVNASLQQTQgdlsayEAELEARLNLRDAEANQLkeELEKVTRLTQLEQSA 714
Cdd:PRK10929 150 --------------RRQLNEIERRLQTLGTPNTPLAQAQ------LTALQAESAALKALVDEL--ELAQLSANNRQELAR 207
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462622363 715 LQAELEKER--------QALKNALgKAQFSEEKEQ--ENSELHAK 749
Cdd:PRK10929 208 LRSELAKKRsqqldaylQALRNQL-NSQRQREAERalESTELLAE 251
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1491-2000 |
3.72e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1491 EEILKEINKIvaakDSDFQCLSKKKEKLTEELQKLQK---DIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQ 1567
Cdd:PRK03918 203 EEVLREINEI----SSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1568 QQEMAVLdRQLGHKKEELHLLQGSMVQAKADLQEaLRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTl 1647
Cdd:PRK03918 279 EEKVKEL-KELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1648 IKQEIEKEEENLQVVLRQMSKHKT--------ELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQ 1719
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKrltgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1720 QISQQQKGEI--EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLqEKCDIWEKKLAQTKRVLAAAEE-NSKMEQ 1796
Cdd:PRK03918 436 GKCPVCGRELteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKElEEKLKK 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1797 SNLEKLELN---VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREavnsLQEELANVQDHL-NLAKQDLLHTTKHQDVL 1872
Cdd:PRK03918 515 YNLEELEKKaeeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE----LEKKLDELEEELaELLKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1873 LSEQTRLQKDISEWaNRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKE--------RESEESKLETSKV 1944
Cdd:PRK03918 591 EERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEleelekkySEEEYEELREEYL 669
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 1945 TLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKR 2000
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-684 |
3.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 270 EEVERLERDLEKKMIETEELK----------SKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDlntknelLKQKT 339
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIEnrldelsqelSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEED-------LSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 340 IELTRACQKQYELEQElafykIDAKFEPLNYYPSEYAEIDKAPDESPYigksrykrnmfatesyiidsaQAVQIKKMEPD 419
Cdd:TIGR02169 751 QEIENVKSELKELEAR-----IEELEEDLHKLEEALNDLEARLSHSRI---------------------PEIQAELSKLE 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 420 EQLRNdhmnlrghtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQlkkealDLELQMEKQKQ 499
Cdd:TIGR02169 805 EEVSR----------IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE------NLNGKKEELEE 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 500 EIAGKQKEIKDLqiaIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQ- 578
Cdd:TIGR02169 869 ELEELEAALRDL---ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEe 945
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 579 IAANEALKKDLEGVISGLQE---YLGTIKGQATQAQNECRKLRDEKETLLQRLTEveqERDQLEIVAMDAENMRKelael 655
Cdd:TIGR02169 946 IPEEELSLEDVQAELQRVEEeirALEPVNMLAIQEYEEVLKRLDELKEKRAKLEE---ERKAILERIEEYEKKKR----- 1017
|
410 420
....*....|....*....|....*....
gi 2462622363 656 ESALQEQHEVNASLQQTQGDLSAYEAELE 684
Cdd:TIGR02169 1018 EVFMEAFEAINENFNEIFAELSGGTGELI 1046
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1587-1964 |
4.84e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.43 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1587 LLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLtlikqeiekeEENLQVVLRQM 1666
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEEL----------RQSREKHEELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1667 SKHKtELKNILDMLQLENHELQGLKLQHDQRVSELEktqvavleekleleNLQQISQQQKGEIEWQkqlLERDKREIERM 1746
Cdd:pfam07888 101 EKYK-ELSASSEELSEEKDALLAQRAAHEARIRELE--------------EDIKTLTQRVLERETE---LERMKERAKKA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1747 TAESRALQScveclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL---SL 1823
Cdd:pfam07888 163 GAQRKEEEA-------ERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAeneAL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1824 HNDISAMQQQLQEKREAVNSLQEELANVqdhlnLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ--KEEETKQ 1901
Cdd:pfam07888 236 LEELRSLQERLNASERKVEGLGEELSSM-----AAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARwaQERETLQ 310
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 1902 QQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKL 1964
Cdd:pfam07888 311 QSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASL 373
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1800-2181 |
6.95e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 6.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1800 EKLELNVRKLQQELDQLN-RDKLSLHND-ISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTK---HQDVL-- 1872
Cdd:COG3096 279 ERRELSERALELRRELFGaRRQLAEEQYrLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKierYQEDLee 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1873 LSEQTRLQKDISEWAN--------RFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE-SEESKLEtsk 1943
Cdd:COG3096 359 LTERLEEQEEVVEEAAeqlaeaeaRLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARAlCGLPDLT--- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1944 vtlkeqQHQLEKELTDQKSKLDQVLSKVLAAEERVR----TLQEEERWCESLEKTLSQTKR-QLSEREQQLVEKSGELLA 2018
Cdd:COG3096 436 ------PENAEDYLAAFRAKEQQATEEVLELEQKLSvadaARRQFEKAYELVCKIAGEVERsQAWQTARELLRRYRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2019 LQKEADSMRADFSLLRnQFLTERKKAEKQVASLKEALKIQRSQLEknLLMANQKDLERRQMEISDAMRTLkSEVKDEIRT 2098
Cdd:COG3096 510 LAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAE--ELEELLAELEAQLEELEEQAAEA-VEQRSELRQ 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2099 SLKNLNQFLPELPA------DLEAILERNENLEGE-LESLkenlpftmnegpfEEKLNFSQVHIMDEHwRGEALREKLRH 2171
Cdd:COG3096 586 QLEQLRARIKELAArapawlAAQDALERLREQSGEaLADS-------------QEVTAAMQQLLERER-EATVERDELAA 651
|
410
....*....|
gi 2462622363 2172 REDRLKAQLR 2181
Cdd:COG3096 652 RKQALESQIE 661
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1831-2111 |
8.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1831 QQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVL--LSEQTRLQKDISEWanrfedcQKEEETKQQQLQvlq 1908
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASA-------EREIAELEAELE--- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1909 nEIEENKLKLVQQEMMFQRLQKERESEESKLETskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE---EE 1985
Cdd:COG4913 679 -RLDASSDDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1986 RWCESL-EKTLSQTKRQLSEREQQLVEKsgellaLQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIqRSQLEK 2064
Cdd:COG4913 754 RFAAALgDAVERELRENLEERIDALRAR------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL-LDRLEE 826
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 2065 NLLMANQKDLERRQMEISDAMRT-LKSEVKDEIRT---SLKNLNQFLPELP 2111
Cdd:COG4913 827 DGLPEYEERFKELLNENSIEFVAdLLSKLRRAIREikeRIDPLNDSLKRIP 877
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1830-2037 |
9.51e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 9.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1830 MQQQLQEKREAVNS----LQEELANVQDHLNLAKQDLLH-TTKHQDVLLSEQTR-LQKDISEWANRFEDCQKEEETKQQQ 1903
Cdd:COG3206 162 LEQNLELRREEARKalefLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAKlLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1904 LQVLQNEIEENKLKL--VQQEMMFQRLQKERESEESKLETSKVTLKEQqH----QLEKELTDQKSKLDQVLSKVLA-AEE 1976
Cdd:COG3206 242 LAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELEAELAELSARYTPN-HpdviALRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 1977 RVRTLQEEErwcESLEKTLSQTKRQLsereQQLVEKSGELLALQKEADSMRADFSLLRNQF 2037
Cdd:COG3206 321 ELEALQARE---ASLQAQLAQLEARL----AELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
435-1102 |
1.07e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL--EEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQ 512
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 513 ----IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanealkKD 588
Cdd:TIGR02169 322 erlaKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL------------KD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 589 LEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAenmRKELAELESalqeqhevnaS 668
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK---ALEIKKQEW----------K 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 669 LQQTQGDLSAYEAELEarlnlrdaeanQLKEELEKVTRltqlEQSALQ---AELEKERQALKNA-LGKAQFSEEKEQENS 744
Cdd:TIGR02169 457 LEQLAADLSKYEQELY-----------DLKEEYDRVEK----ELSKLQrelAEAEAQARASEERvRGGRAVEEVLKASIQ 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 745 ELHAKLKHL-QDDNNLLKQQLKDFQNHLNHVVdglVRPEEVAARVDELRRKLKLG-------TGEMNIHSPSDVLGKS-- 814
Cdd:TIGR02169 522 GVHGTVAQLgSVGERYATAIEVAAGNRLNNVV---VEDDAVAKEAIELLKRRKAGratflplNKMRDERRDLSILSEDgv 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 815 ------LADLQKQFS---------------------------------EILARS------KWERDEAQVRERKLQEEMAL 849
Cdd:TIGR02169 599 igfavdLVEFDPKYEpafkyvfgdtlvvedieaarrlmgkyrmvtlegELFEKSgamtggSRAPRGGILFSRSEPAELQR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 850 QQEKLatgqEEFRQACERALEARMNFDKRQHEARIQqmeneihyLQENLKSMEEIQGLTDLQLQEADEEKERILAQLREL 929
Cdd:TIGR02169 679 LRERL----EGLKRELSSLQSELRRIENRLDELSQE--------LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 930 EKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAAR 1009
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1010 DLTRAEAEIELLQNLLRQKGEQfRLEMEKtgvgtgansqvlEIEKLNETMERQRTEIARLQN-VLDLTG--SDNKGGFEN 1086
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQ-IKSIEK------------EIENLNGKKEELEEELEELEAaLRDLESrlGDLKKERDE 893
|
730
....*....|....*.
gi 2462622363 1087 VLEEIAELRREVSYQN 1102
Cdd:TIGR02169 894 LEAQLRELERKIEELE 909
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1894-2080 |
1.32e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1894 QKEEETkQQQLQVLQNEIEENKLKLVQQEMMFQRLQKER-----ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVL 1968
Cdd:COG3206 168 LRREEA-RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1969 SKVLAAEERVRTLQEEERWcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQV 2048
Cdd:COG3206 247 AQLGSGPDALPELLQSPVI-QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEAL 325
|
170 180 190
....*....|....*....|....*....|..
gi 2462622363 2049 ASLKEALKIQRSQLEKNLLMANQKDLERRQME 2080
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1295-2048 |
1.50e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1295 NLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVE 1374
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1375 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1454
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1455 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1534
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1535 NEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELhllqgsmvqakadlqeaLRLGETEVTEKC 1614
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL-----------------KSIAVLEIDPIL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1615 NHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeenlqVVLRQMSKHKTELKNILDMLQLENHELQGLKLQH 1694
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA--------KAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1695 DQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIW 1774
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1775 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELdqlnrdklslhnDISAMQQQLQEKREAVNSLQEELANVQDH 1854
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE------------KLKAQEEELRALEEELKEEAELLEEEQLL 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1855 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANR-FEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERE 1933
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERlEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1934 SEESKletskvtlKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKS 2013
Cdd:pfam02463 904 EESQK--------LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV 975
|
730 740 750
....*....|....*....|....*....|....*
gi 2462622363 2014 GELLALQKEADSMRADFSLLRNQFLTERKKAEKQV 2048
Cdd:pfam02463 976 NLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1321-1534 |
1.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1321 RASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKHHEDIVDEieci 1399
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaELRAELEAQKEELAE---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1400 ektLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT-ESDAEELERRAQETAVNLVKADQQLRSLQA 1478
Cdd:COG4942 109 ---LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 1479 DAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAER 1534
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
435-589 |
1.52e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.77 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEAL-DLELQMEK--QKQEIAGKQKEIKDL 511
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIeEVEARIKKyeEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 512 QIAIDSLDSK----DPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK 587
Cdd:COG1579 95 QKEIESLKRRisdlEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
..
gi 2462622363 588 DL 589
Cdd:COG1579 175 EL 176
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
1.58e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.77 E-value: 1.58e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2462622363 126 KLEVLNLSYNLIGKIEKLDKLLKLRELNLSYN-KISKIEGIEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
460-1033 |
1.60e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 460 IEKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIK-------DLQIAIDSLDSKDPKHSHMKAQK 532
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeavleETQERINRARKAAPLAAHIKAVT 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 533 SGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEylgtIKGQATQAQN 612
Cdd:TIGR00618 304 QIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE----ISCQQHTLTQ 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 613 ECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDA 692
Cdd:TIGR00618 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 693 EANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK-------------LKHLQDDNNL 759
Cdd:TIGR00618 460 HLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgpltrrMQRGEQTYAQ 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 760 LKQQLKDFQNHLNHVVDGLVRPEEVAARVDElrRKLKLGTGEMNIHSPSDVLGKSLADLQKQFSEILARSKWERDEAQVR 839
Cdd:TIGR00618 540 LETSEEDVYHQLTSERKQRASLKEQMQEIQQ--SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 840 ERKLQEEMALQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQM---ENEIHYLQENLKSMEEIQGLTDlQLQEAD 916
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQSEKE-QLTYWK 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 917 EEKERILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLhgtvMKINQERAEELQE 996
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR----TEAHFNNNEEVTA 772
|
570 580 590
....*....|....*....|....*....|....*..
gi 2462622363 997 AERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFR 1033
Cdd:TIGR00618 773 ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1296-1566 |
1.84e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKREERWMR-------ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1368
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRdeadevlEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1369 IDGNVESLMTELEIEKSlkHHEDIVDEIEciekTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1448
Cdd:PRK02224 291 LEEERDDLLAEAGLDDA--DAEAVEARRE----ELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1449 ESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKD 1528
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 1529 IEMAER--------------NEDHHLQVLKESEVLLQAKRAELEKLKSQVTS 1566
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1798-2001 |
1.85e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1798 NLEKLELNVRKLQQELDQLNRdklslhndISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLhtTKHQDVLLSEQT 1877
Cdd:COG4913 236 DLERAHEALEDAREQIELLEP--------IRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1878 RLQKDISEWANRFEDCQKE-EETKQQ-------QLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQ 1949
Cdd:COG4913 306 RLEAELERLEARLDALREElDELEAQirgnggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 1950 QHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERwceSLEKTLSQTKRQ 2001
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1447-1644 |
2.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1447 QTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQ 1526
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1527 KDIE-----MAERNEDHHLQVLKESEVLLQAKRAeLEKLKSQVTSQQQEMAVLDRQLghkkEELHLLQGSMVQAKADLQE 1601
Cdd:COG4942 104 EELAellraLYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462622363 1602 ALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQ 1644
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1734-2181 |
2.46e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1734 QLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQsnlekLELNVRKLQQEL 1813
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-----LEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1814 DQLNRDklslhndisamQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvllseqtrlqkdISEWANRFEDC 1893
Cdd:COG4717 149 EELEER-----------LEELRELEEELEELEAELAELQEELEELLEQLSLATEEE-------------LQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1894 QKEEETKQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLE-TSKVTLKEQQHQLEKELTDQKSKLDQVLSK 1970
Cdd:COG4717 205 QQRLAELEEELEEAQEELEelEEELEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1971 VLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQlveksgELLALQKEADSMRADFSLLRNQFLTERKKAEKQVAS 2050
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELE------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2051 LKEALKIQRSQLEKNLLM--ANQKDLE--RRQMEISDAMRTLKSEVKdEIRTSLKNLNQFLPELPA--DLEAILERNENL 2124
Cdd:COG4717 359 LEEELQLEELEQEIAALLaeAGVEDEEelRAALEQAEEYQELKEELE-ELEEQLEELLGELEELLEalDEEELEEELEEL 437
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 2125 EGELESLKENLPFTMNE-GPFEEKLnfsqvhimdEHWRGEALREKLRHREDRLKAQLR 2181
Cdd:COG4717 438 EEELEELEEELEELREElAELEAEL---------EQLEEDGELAELLQELEELKAELR 486
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
2.93e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.00 E-value: 2.93e-05
10 20 30
....*....|....*....|....*....|..
gi 2462622363 148 KLRELNLSYNKISKIEGIENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1898-2096 |
3.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1898 ETKQQQLQVLQ------NEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVT-LKEQQHQLEKELTDQKSKLDQVLSK 1970
Cdd:COG4913 245 EDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEeLRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1971 VLAAEERVRTLQEEERwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQ-------FLTERKK 2043
Cdd:COG4913 325 LDELEAQIRGNGGDRL--EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEaaalleaLEEELEA 402
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 2044 AEKQVASLKEALKIQRSQLEKnlLMANQKDLERRQMEISDAMRTLKSEVKDEI 2096
Cdd:COG4913 403 LEEALAEAEAALRDLRRELRE--LEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-703 |
3.30e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 245 RSLESLEGQPVTTQDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSL----KEEAML--QK 318
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreieKRLSRLeeEI 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 319 QSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQ-ELAFYKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNM 397
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEErHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 398 FATESYIIDsaqavQIKKMEPDEQLRNDHMN----LRGHTPLDTQL---EDKEKKISAAQTRLSELHDEIEKAEQQILRA 470
Cdd:PRK03918 404 EEEISKITA-----RIGELKKEIKELKKAIEelkkAKGKCPVCGRElteEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 471 TEEFKQLEEAIQLKKEALDLElQMEKQKQEIAGKQKEI--KDLQIAIDSLDSKDPKHSHMKAQKSGKEQQLdimnKQYQQ 548
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLK-ELAEQLKELEEKLKKYnlEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 549 LESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLgtikgqatQAQNECRKLRDEKETLLQRL 628
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYL--------ELKDAEKELEREEKELKKLE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 629 TEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQ--GDLSAYEAELEARLNLRD---AEANQLKEELEK 703
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLElsRELAGLRAELEELEKRREeikKTLEKLKEELEE 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1839-2044 |
3.48e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1839 EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKL 1918
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1919 VQQE-----------------------------------MMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1963
Cdd:COG4942 100 EAQKeelaellralyrlgrqpplalllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1964 LDQvlskvlaaeervrtlQEEERwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKK 2043
Cdd:COG4942 180 LAE---------------LEEER--AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
.
gi 2462622363 2044 A 2044
Cdd:COG4942 243 T 243
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
304-555 |
3.67e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.86 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 304 DKLNKSLKEEAMLQKQSCEELKSDLNTK--------NELLKQKTIELTRAcQKQYELEQELAfYKIDAKFEPLNyypSEY 375
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQiktynkniEEQRKKNGENIARK-QNKYDELVEEA-KTIKAEIEELT---DEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 376 AEIDKaPDESPyiGKSRYKRNMFATESyiidSAQAVQIKKMEpdeqlrndHMNLRGHT-PLDTQ-LEDKEKKISAAQTRL 453
Cdd:PHA02562 244 LNLVM-DIEDP--SAALNKLNTAAAKI----KSKIEQFQKVI--------KMYEKGGVcPTCTQqISEGPDRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 454 SELHDEIEKAEQQIlraTEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDPKHshmKAQKS 533
Cdd:PHA02562 309 KELQHSLEKLDTAI---DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN---AEELA 382
|
250 260
....*....|....*....|..
gi 2462622363 534 GKEQQLDIMNKQYQQLESRLDE 555
Cdd:PHA02562 383 KLQDELDKIVKTKSELVKEKYH 404
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
477-699 |
3.70e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 477 LEEAIQLKKEALD-----LELQMEKQKQEIAGKQKEIKDLQIAIDSLDSKDpkhshmkaQKSGKEQQLDIMNKQYQQLES 551
Cdd:COG3206 162 LEQNLELRREEARkalefLEEQLPELRKELEEAEAALEEFRQKNGLVDLSE--------EAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 552 RLDEILSRIAKETEEIKDLEEQLTE-GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNecrkLRDEKETLLQRL-T 629
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPElLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIA----LRAQIAALRAQLqQ 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 630 EVEQERDQLEIvamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKE 699
Cdd:COG3206 310 EAQRILASLEA---ELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1768-2177 |
3.78e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.13 E-value: 3.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1768 QEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAvnslQEE 1847
Cdd:PLN02939 49 KRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKD----GEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1848 LANVQdhlnlaKQDLLHTTKH--QDVLLSEQTRLQKdisewANRFEDCQKEEETKQQQLQVLQNEIEEN--KLKLVQQEM 1923
Cdd:PLN02939 125 LSDFQ------LEDLVGMIQNaeKNILLLNQARLQA-----LEDLEKILTEKEALQGKINILEMRLSETdaRIKLAAQEK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1924 M-FQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK----------LDQVLSKVLAAEERVRTLQEEERWCES-- 1990
Cdd:PLN02939 194 IhVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEEnmllkddiqfLKAELIEVAETEERVFKLEKERSLLDAsl 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1991 --LEKTLSQTKR---QLSEREQQ-LVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEAlKIQRSQLEK 2064
Cdd:PLN02939 274 reLESKFIVAQEdvsKLSPLQYDcWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEA-NVSKFSSYK 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2065 NLLMANQKDLERRQMEISDAmrtlksevkdEIRTSLKNLNQFLPELPADLEAILErnenlegelESLKENLPFTMNEGPF 2144
Cdd:PLN02939 353 VELLQQKLKLLEERLQASDH----------EIHSYIQLYQESIKEFQDTLSKLKE---------ESKKRSLEHPADDMPS 413
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2462622363 2145 EeklNFSQVHIMDEHWRGEA---------LREKLRHREDRLK 2177
Cdd:PLN02939 414 E---FWSRILLLIDGWLLEKkisnndaklLREMVWKRDGRIR 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1394-1604 |
4.10e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1394 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1473
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1474 RSLQADAKDL--EQHKIKQEEILKEINKIVAAKDS--DFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVL 1549
Cdd:COG4942 100 EAQKEELAELlrALYRLGRQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 1550 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQgsmvQAKADLQEALR 1604
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIA 230
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
436-700 |
4.23e-05 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 48.83 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 436 DTQLEDKEKKISAAQTRLSEL------HDEIEKAEQQILRATEEF-KQLEEaiQLKKEALDLELQMEKQKQEIAGK--QK 506
Cdd:pfam13779 481 DGDLSDAERRLRAAQERLSEAlergasDEEIAKLMQELREALDDYmQALAE--QAQQNPQDLQQPDDPNAQEMTQQdlQR 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 507 EIKDLQIAIDSLDSKDPKH---------SHMKAQKSGKEQQlDIMNKQYQQLESrldeiLSRIAKETEEIKDleEQLTEG 577
Cdd:pfam13779 559 MLDRIEELARSGRRAEAQQmlsqlqqmlENLQAGQPQQQQQ-QGQSEMQQAMDE-----LGDLLREQQQLLD--ETFRQL 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 578 QIAANEALKKDLEGVISGLQEYLGTIKGQ------ATQAQNECRKLRDEKETLLQRLTEVEQerdqlEIVAMDAENMRKE 651
Cdd:pfam13779 631 QQQGGQQQGQPGQQGQQGQGQQPGQGGQQpgaqmpPQGGAEALGDLAERQQALRRRLEELQD-----ELKELGGKEPGQA 705
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 652 LAElesALQEQHEVNASLQQTQGDlSAYEAELEARLNLRD---AEANQLKEE 700
Cdd:pfam13779 706 LGD---AGRAMRDAEEALGQGDLA-GAVDAQGRALEALRKgaqQLAEAMQQQ 753
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1929-2133 |
4.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1929 QKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLS---KVLAAEERVRTLQEEERwceSLEKTLSQTKRQLSER 2005
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAlerRIAALARRIRALEQELA---ALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2006 EQQLVEKSGEL------------------LALQKEADSMRADFSLLRnQFLTERKKAEKQVASLKEALKIQRSQLEknll 2067
Cdd:COG4942 96 RAELEAQKEELaellralyrlgrqpplalLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELE---- 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 2068 mANQKDLERRQMEISDAMRTLKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKE 2133
Cdd:COG4942 171 -AERAELEALLAELEEERAALEAL-KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1394-2129 |
5.90e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 5.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1394 DEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQL 1473
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1474 RSLQADAKDLEQHKIKQEEILKEinkivaaKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAK 1553
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDE-------EEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1554 RAEL----EKLKS-QVTSQQQEMAVLDRQLGHKKEElhllqgsmvQAKADLQEALRLGETEVTEKCNHIREVKSLLEELS 1628
Cdd:pfam01576 165 TSNLaeeeEKAKSlSKLKNKHEAMISDLEERLKKEE---------KGRQELEKAKRKLEGESTDLQEQIAELQAQIAELR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1629 FQkgelNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNildmlQLENHELQGLKLQHDQR--VSELEKTQV 1706
Cdd:pfam01576 236 AQ----LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQE-----DLESERAARNKAEKQRRdlGEELEALKT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1707 AVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQscveclSKEKEDLQEkcdiwekKLAQTKRVLA 1786
Cdd:pfam01576 307 ELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKH------TQALEELTE-------QLEQAKRNKA 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1787 AAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLlhtt 1866
Cdd:pfam01576 374 NLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLL---- 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1867 khqDVLLSEQTRLQKDISEWANRFEDCQK--EEETKQQ---QLQVLQNEIEENKLklvqqemmfqrlqKERESEEsklET 1941
Cdd:pfam01576 450 ---NEAEGKNIKLSKDVSSLESQLQDTQEllQEETRQKlnlSTRLRQLEDERNSL-------------QEQLEEE---EE 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1942 SKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQ-----------EEERWCESLEKT---LSQTKRQLSEREQ 2007
Cdd:pfam01576 511 AKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQrelealtqqleEKAAAYDKLEKTknrLQQELDDLLVDLD 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2008 QLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQvASLKEALKIQRSQLEKNLLMAnQKDLERRQMEISDAMRT 2087
Cdd:pfam01576 591 HQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAE-AREKETRALSLARALEEALEA-KEELERTNKQLRAEMED 668
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 2462622363 2088 LKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELE 2129
Cdd:pfam01576 669 LVSS-KDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQ 709
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1732-1986 |
6.02e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 6.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1732 QKQLLERDKREIErmTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-------- 1803
Cdd:PRK11281 42 QAQLDALNKQKLL--EAEDKLVQQDLE----QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKddndeetr 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1804 -----LNVRKLQQELDQLNRDKLSLHND---------------------ISAMQQQLQEKREAVNSLQEElanvQDHLNL 1857
Cdd:PRK11281 116 etlstLSLRQLESRLAQTLDQLQNAQNDlaeynsqlvslqtqperaqaaLYANSQRLQQIRNLLKGGKVG----GKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1858 AKQDLLHTtkhQDVLLSEQTRLQKDISEWANRFEDC---QKEEETK-----QQQLQVLQNEIEENKLKLVQQEMMfqrlQ 1929
Cdd:PRK11281 192 SQRVLLQA---EQALLNAQNDLQRKSLEGNTQLQDLlqkQRDYLTAriqrlEHQLQLLQEAINSKRLTLSEKTVQ----E 264
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622363 1930 KERESEESKLETSKVTLKEQQ--HQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEER 1986
Cdd:PRK11281 265 AQSQDEAARIQANPLVAQELEinLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1296-1848 |
7.26e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1296 LENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1375
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1376 LMTELEIEKslKHHEDIvdeiecieKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEEL 1455
Cdd:PRK01156 244 LSSLEDMKN--RYESEI--------KTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1456 ERRAQETAVNLVKAD---QQLRSLQADAKDLEQHKIKQEEILKEINKIvAAKDSDFQCLSKKKEKLTEELQKLQKDIEMA 1532
Cdd:PRK01156 311 KQILSNIDAEINKYHaiiKKLSVLQKDYNDYIKKKSRYDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1533 ERNEDHHLQVLKESEVLLQAKRAE----LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKAdlqeALRLGET 1608
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC----GTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1609 EVTEKCNHIREVKSLLEE-LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDML-QLENHE 1686
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKInELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1687 LQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQIS----QQQKGEIEWQKQLLERDKREIE---------------RMT 1747
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDietnRSRSNEIKKQLNDLESRLQEIEigfpddksyidksirEIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1748 AESRALQSCVECLSKEK---EDLQEKCDIWEKKLAQTKRVlaaaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1824
Cdd:PRK01156 626 NEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSI----IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701
|
570 580
....*....|....*....|....
gi 2462622363 1825 NDISAMQQQLQEKREAVNSLQEEL 1848
Cdd:PRK01156 702 STIEILRTRINELSDRINDINETL 725
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
547-734 |
7.30e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 547 QQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKK----DLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE 622
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 623 TLLQRLTEVEQERDQL----EIVAMDAE--NMRKELAELESALQEQHEvnaslqqtqgDLSAYEAELEARLNLRDAEANQ 696
Cdd:COG3206 244 ALRAQLGSGPDALPELlqspVIQQLRAQlaELEAELAELSARYTPNHP----------DVIALRAQIAALRAQLQQEAQR 313
|
170 180 190
....*....|....*....|....*....|....*...
gi 2462622363 697 LKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 734
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
416-748 |
8.33e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 8.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 416 MEPDEQLRNDHMNLRgHTPLDTQ---------LEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKE 486
Cdd:COG3096 325 LEQDYQAASDHLNLV-QTALRQQekieryqedLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQ 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 487 ALD------LELQMEKQKQEIAGKQKEIKDLqiaidSLDSKDPKHSHMKAQKS-------GKEQQLDIMNKQYQQLESRL 553
Cdd:COG3096 404 ALDvqqtraIQYQQAVQALEKARALCGLPDL-----TPENAEDYLAAFRAKEQqateevlELEQKLSVADAARRQFEKAY 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 554 dEILSRIAKETEEikdleeqlTEGQIAANEALK-----KDLEGVISGLQEYLGTIKgQATQAQNECRKLRDEketLLQRL 628
Cdd:COG3096 479 -ELVCKIAGEVER--------SQAWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQNAERLLEE---FCQRI 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 629 TEVEQERDQLEIVAMDAEnmrKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR----LNLRDAeANQLKEEL-EK 703
Cdd:COG3096 546 GQQLDAAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLAAQDA-LERLREQSgEA 621
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2462622363 704 VTRLTQLeQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 748
Cdd:COG3096 622 LADSQEV-TAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
440-764 |
9.26e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.98 E-value: 9.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 440 EDKEKKISAAQTRlsELHDEIEKAEQQILRATEEFkqLEEAIQLKKEALDLelqmekqKQEIAGKQKEIKDLQIAIDSLd 519
Cdd:PRK11281 39 ADVQAQLDALNKQ--KLLEAEDKLVQQDLEQTLAL--LDKIDRQKEETEQL-------KQQLAQAPAKLRQAQAELEAL- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 520 skdpkhshmkaqksgKEQQLDIMNKQYqqlesrldeilsriakETEEIKDLEEQLTEGQIAANEAlkkdlegvisglQEY 599
Cdd:PRK11281 107 ---------------KDDNDEETRETL----------------STLSLRQLESRLAQTLDQLQNA------------QND 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 600 LGTIKGQATQAQNecrklrdeketllqrltevEQERDQleiVAMDAENMRkeLAELESALQEQHEVNASLQQTQGDLsay 679
Cdd:PRK11281 144 LAEYNSQLVSLQT-------------------QPERAQ---AALYANSQR--LQQIRNLLKGGKVGGKALRPSQRVL--- 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 680 eaeLEARLNLRDAEANQLKEELEKVTRLTQLEQS------ALQAELEKERQALKNALG--KAQFSEE--KEQENSELHAK 749
Cdd:PRK11281 197 ---LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKqrdyltARIQRLEHQLQLLQEAINskRLTLSEKtvQEAQSQDEAAR 273
|
330
....*....|....*
gi 2462622363 750 LKHlqddNNLLKQQL 764
Cdd:PRK11281 274 IQA----NPLVAQEL 284
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
547-704 |
9.59e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 9.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 547 QQLESRLDEILSRIAKETEEIKDLEEQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE-- 622
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAalEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEye 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 623 TLLQRLTEVEQERDQLEivamdaENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELE 702
Cdd:COG1579 93 ALQKEIESLKRRISDLE------DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
..
gi 2462622363 703 KV 704
Cdd:COG1579 167 EL 168
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1797-2082 |
1.05e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1797 SNLEKLELNVRKLQQELDQLNRDKLSLhnDISAMQQQLQEKREAVNSLQEELANVQDHlnlaKQDLLHTTKHQDVLLSEQ 1876
Cdd:COG5022 787 VDYELKWRLFIKLQPLLSLLGSRKEYR--SYLACIIKLQKTIKREKKLRETEEVEFSL----KAEVLIQKFGRSLKAKKR 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1877 TRLQKDisewANRFEDCQKEEETKQQQLQVLQNEIEE-NKLKLVQQEMMFQRLQKERESEESKLETSKVTLKE----QQH 1951
Cdd:COG5022 861 FSLLKK----ETIYLQSAQRVELAERQLQELKIDVKSiSSLKLVNLELESEIIELKKSLSSDLIENLEFKTELiarlKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1952 QLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFS 2031
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTK 1016
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 2032 LL--RNQFLTERKKAEKQVASLKEALKIQRSQLE-KNLLMANQKDLERRQMEIS 2082
Cdd:COG5022 1017 QLkeLPVEVAELQSASKIISSESTELSILKPLQKlKGLLLLENNQLQARYKALK 1070
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1693-1913 |
1.19e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1693 QHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCD 1772
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1773 IWEKKLAQTKRVLAAAEENSKME----QSNLEKLELNVRKLQqeldQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEEL 1848
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 1849 ANVQDHLNLAKQDLLHTTKHQDVLLseqTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEE 1913
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1399-2030 |
1.31e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1399 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQA 1478
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1479 DAKDLE----------------QHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKL------------QKDIE 1530
Cdd:TIGR00618 268 RIEELRaqeavleetqerinraRKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRaahvkqqssieeQRRLL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1531 MAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEV 1610
Cdd:TIGR00618 348 QTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1611 TEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQ--EIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQ 1688
Cdd:TIGR00618 428 HAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSlkEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLC 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1689 GLKL---QHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKE 1765
Cdd:TIGR00618 508 GSCIhpnPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1766 DLQEkcdiwekklaQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnrdklslhnDISAMQQQLQEKREavnslQ 1845
Cdd:TIGR00618 588 NLQN----------ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ---------DVRLHLQQCSQELA-----L 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1846 EELANVQDHLNLAKQDLLH---TTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-ETKQQQLQVLQNEIEENKLKLVQQ 1921
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREhalSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlAQCQTLLRELETHIEEYDREFNEI 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1922 EMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELT-DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKR 2000
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTeAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKT 803
|
650 660 670
....*....|....*....|....*....|
gi 2462622363 2001 QLSEREQQLVEKSGELLALQKEADSMRADF 2030
Cdd:TIGR00618 804 LEAEIGQEIPSDEDILNLQCETLVQEEEQF 833
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
442-581 |
1.35e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 442 KEKKISAAQtrlSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQ-MEKQKQEIAGKQKEIKDlqiaidslds 520
Cdd:PRK12704 55 KKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLElLEKREEELEKKEKELEQ---------- 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 521 kdpkhshmkaqksgKEQQLDIMNKQYQQLESRLDEILSRIAKETEE------IKDLEEQLTEgQIAA 581
Cdd:PRK12704 122 --------------KQQELEKKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARH-EAAV 173
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-220 |
1.64e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 41.36 E-value: 1.64e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 170 NLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL--QDISKLKPLQDL 220
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspGAFSGLPSLRYL 54
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1501-1750 |
1.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1501 VAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGH 1580
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1581 KKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTlikqeiekeeeNLQ 1660
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA-----------ELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1661 VVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQvavleekleLENLQQISQQQKGEIEWQKQL--LER 1738
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL---------AELAAELAELQQEAEELEALIarLEA 234
|
250
....*....|..
gi 2462622363 1739 DKREIERMTAES 1750
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
439-642 |
1.93e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 439 LEDKEKKISAAQTRLSELHDE----IEKAEQQILRATEEFKQLEEAIQLKKEAL-DLELQMEKQKQEIAGKQKEIKDLQ- 512
Cdd:PHA02562 204 IEEQRKKNGENIARKQNKYDElveeAKTIKAEIEELTDELLNLVMDIEDPSAALnKLNTAAAKIKSKIEQFQKVIKMYEk 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 513 -----IAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQltEGQIAANEALKK 587
Cdd:PHA02562 284 ggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTN--KQSLITLVDKAK 361
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 588 DLEGVISGLQEYLGTIKGqatqaqnECRKLRDEKETLLQRLTEVEQERDQLEIVA 642
Cdd:PHA02562 362 KVKAAIEELQAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
76-205 |
2.10e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.32 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 76 SHAGVRYITEALikkltkQDNLALiKSLNLSLSKDGGKKFKYI-ENLEKCVKLEVLNLSYNLIGK------IEKLDKLLK 148
Cdd:COG5238 277 GAEGAIALAKAL------QGNTTL-TSLDLSVNRIGDEGAIALaEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTT 349
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 149 LRELNLSYNKISK------IEGIENMCNLQKLNLAGNEI-EHIPVWLGKKLK--SLRVLNLKGNKI 205
Cdd:COG5238 350 LHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQtnRLHTLILDGNLI 415
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1737-1967 |
2.19e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.96 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1737 ERDKReIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRV--LAAAEENSKMEQSNLEKLELNVRKLQQELD 1814
Cdd:pfam15905 91 EQDKR-LQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVneLLKAKFSEDGTQKKMSSLSMELMKLRNKLE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1815 QLNRDKLSLHNDisaMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ 1894
Cdd:pfam15905 170 AKMKEVMAKQEG---MEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIA 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 1895 KEEET---KQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKvtlKEQQHQLEKELTDQKSKLDQV 1967
Cdd:pfam15905 247 QLEELlkeKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREY---EEKEQTLNAELEELKEKLTLE 319
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-933 |
2.21e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAI--------QLKKEALDLELQMEKQKQEIAGKQK 506
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELeklnnkynDLKKQKEELENELNLLEKEKLNIQK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 507 EIKD-------LQIAIDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEE------------- 566
Cdd:TIGR04523 188 NIDKiknkllkLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqlkdeqnkikk 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 567 ---------------IKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEV 631
Cdd:TIGR04523 268 qlsekqkeleqnnkkIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 632 EQERDQLEivaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrltqLE 711
Cdd:TIGR04523 348 KKELTNSE---SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK------LQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 712 QSALQAELEKERQALKNALGKAQFSEEKEQeNSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpeevaarvDEL 791
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL----------EQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 792 RRKLKLGTGEMnihspsdvlgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEFrqaceraLEA 871
Cdd:TIGR04523 488 QKELKSKEKEL----------KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL-------NKD 550
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 872 RMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKK 933
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1511-2023 |
2.56e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1511 LSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQG 1590
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1591 SMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHK 1670
Cdd:pfam05483 297 ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1671 TELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQ---ISQQQKGEIEWQKQLLERDKREIERMT 1747
Cdd:pfam05483 377 DQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQfekIAEELKGKEQELIFLLQAREKEIHDLE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1748 AESRALQSCVECLSKEKEDLqeKCDIWEKKLAQTKRVlaaaeenskmeqSNLEKLELNVRKLQQELDQLNRDKLSLHNDI 1827
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDL--KTELEKEKLKNIELT------------AHCDKLLLENKELTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1828 SAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLH-----------TTKHQDVLLSEQTRLQKDISEWANRFEDCQKE 1896
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQkgdevkckldkSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1897 EETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKV----L 1972
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVekakA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1973 AAEERVRTLQEEERWCE-------------------------------------------SLEKTLSQTKRQLSEREQQL 2009
Cdd:pfam05483 683 IADEAVKLQKEIDKRCQhkiaemvalmekhkhqydkiieerdselglyknkeqeqssakaALEIELSNIKAELLSLKKQL 762
|
570
....*....|....
gi 2462622363 2010 VEKSGELLALQKEA 2023
Cdd:pfam05483 763 EIEKEEKEKLKMEA 776
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
528-732 |
2.59e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 528 MKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALK--KDLEGVISGLQ--EYLGTI 603
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 604 KGQATQAQNECRKLRDEKETLLqrltEVEQERDQLEIVAM----DAENMRKELAELEsaLQEQHEvnaslqQTQGDLSAY 679
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLG--FERLEL------EEEGTPSEL 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 680 EAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAEL--EKERQALKNALGK 732
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLeiELERAEALSKFLK 271
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1799-1957 |
2.68e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1799 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS--EQ 1876
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1877 TRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKE 1956
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
.
gi 2462622363 1957 L 1957
Cdd:COG1579 172 I 172
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
526-1530 |
2.83e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 526 SHMKAQKSGKEQQLDIMNKQYQQLESRLDEI------LSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEy 599
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 600 lgtikgQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAE----NMRKELAELESALQEQHEVNASLQQTQGD 675
Cdd:TIGR02168 247 ------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 676 LSAYEAELEARLNLRDAEANQLKEELEKVTRLTQlEQSALQAELEKERQALKNALGKAQfsEEKEQENSELHAKLKHLQD 755
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELE--EQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 756 DNNLLkQQLKDFQNHLNHvvdglvRPEEVAARVDELRRKLklgtgemnihspsdvlgkSLADLQKQfSEILARSKWERDE 835
Cdd:TIGR02168 398 LNNEI-ERLEARLERLED------RRERLQQEIEELLKKL------------------EEAELKEL-QAELEELEEELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 836 AQVRERKLQEEMALQQEKLATGQEEFRQAceRALEARMNFDKRQHEARIQQMENEIHYLQENLKSMEEIQGLTDL--QLQ 913
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 914 EADEEKER-ILAQLRELEKKKKLEDAKSQEQVFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKInqerAE 992
Cdd:TIGR02168 530 SVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV----AK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 993 ELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKGEQFRLEMEK----------TGVGTGANSQVL----EIEKLNET 1058
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILerrrEIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1059 MERQRTEIARLQNVLDltgsDNKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRgywyfmpPPPSSKVSSHSSQATK 1138
Cdd:TIGR02168 686 IEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARL-------EAEVEQLEERIAQLSK 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1139 DSGVGLKYSAStpvrkprpgqqdgkegsqpppasgywvyspIRSGLHKLFPSRDADSGGDSQEESELDDQEEppfvpppg 1218
Cdd:TIGR02168 755 ELTELEAEIEE------------------------------LEERLEEAEEELAEAEAEIEELEAQIEQLKE-------- 796
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1219 ymmytvlpdgspvpqgmalyapppPLPNNSRPLTpgtvvygpppagapmvygppppnfsipfipmgvlhcnvpehhNLEN 1298
Cdd:TIGR02168 797 ------------------------ELKALREALD------------------------------------------ELRA 810
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1299 EVSRLEDIMQHLKSKKREERWMRASKrqsEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQkdfIDGNVESLMT 1378
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAAT---ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE---LEALLNERAS 884
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1379 ELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTEsdAEELERR 1458
Cdd:TIGR02168 885 LEEALALLRSELEELSE---ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT--LEEAEAL 959
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 1459 AQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKivaakdsDFQCLSKKKEKLTEELQKLQKDIE 1530
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE-------RYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1324-1576 |
3.04e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1324 KRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESlmteleiekslkhhEDIVDEIECIEKTL 1403
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA--------------KLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1404 LKRRSELREADRLLAEAESELSCTKEKTKNAVEK--FTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQAdak 1481
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1482 dleqhkikqeEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEV---LLQAKRAELE 1558
Cdd:COG3206 306 ----------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVareLYESLLQRLE 375
|
250
....*....|....*...
gi 2462622363 1559 KLKSQVTSQQQEMAVLDR 1576
Cdd:COG3206 376 EARLAEALTVGNVRVIDP 393
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1617-1843 |
3.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1617 IREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQ 1696
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1697 RVSELEKTQVAVLEEKLELENLQQISQQQKGEI----EWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKcd 1772
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL-- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 1773 iwEKKLAQTKRVLAAAEENskmEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1843
Cdd:COG4942 180 --LAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
438-646 |
3.25e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 438 QLEDKEKKISAAQTRLSELHDEIEKAE-QQILRATEEFKQLEEAIQ-LKKEALDLELQMEKQKQEIAGKQKEIKDLQIAI 515
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNpLREEKKKVSVKSLEELIKdVEEELEKIEKEIKELEEEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 516 D--------SLDSKDPKHSHMKAQKSG--KEQQLDimnkQYQQLESRLDEILSRIAKETE------EIKDLEEQLTEgqI 579
Cdd:PRK05771 124 ErlepwgnfDLDLSLLLGFKYVSVFVGtvPEDKLE----ELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEEE--L 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 580 AANEALKKDLEG------VISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTE-VEQERDQLEIVAMDAE 646
Cdd:PRK05771 198 KKLGFERLELEEegtpseLIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEyLEIELERAEALSKFLK 271
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
76-181 |
3.39e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 45.04 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 76 SHAGVRYITEALikklTKQDNLALIKSLNLSLSKDGGKKFKyiENLEKCVKLEVLNLSYNLIGK--IEKLDKLLK----- 148
Cdd:cd00116 178 GDAGIRALAEGL----KANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDagAAALASALLspnis 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 2462622363 149 LRELNLSYNKI------SKIEGIENMCNLQKLNLAGNEI 181
Cdd:cd00116 252 LLTLSLSCNDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
536-942 |
3.70e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 536 EQQLDIMNKQYQQLESRLDE--ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGV-----ISGLQEYLGTIKgQAT 608
Cdd:COG3096 285 ERALELRRELFGARRQLAEEqyRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALrqqekIERYQEDLEELT-ERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 609 QAQNECRKLRDEKETLLQ-RLTEVEQERDQLeivamdaenmRKELAELESALQEQHEVNASLQQTQGDLSAYEAELE-AR 686
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEaRLEAAEEEVDSL----------KSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGlPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 687 LNLRDAEANQ--LKEELEKVT-RLTQLEQ-----SALQAELEKERQALKNALGKAQFSE--EKEQENSELHAKLKHLQDD 756
Cdd:COG3096 434 LTPENAEDYLaaFRAKEQQATeEVLELEQklsvaDAARRQFEKAYELVCKIAGEVERSQawQTARELLRRYRSQQALAQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 757 NNLLKQQLKdfqnhlnhvvdglvrpeevaarvdELRRKLklgtgemnihspsdvlgKSLADLQKQFSEILARSKWERDEA 836
Cdd:COG3096 514 LQQLRAQLA------------------------ELEQRL-----------------RQQQNAERLLEEFCQRIGQQLDAA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 837 QVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDkrQHEARIQQMEN---EIHYLQENLKSMEEIQGLTDLQLQ 913
Cdd:COG3096 553 EELEELLAE----LEAQLEELEEQAAEAVEQRSELRQQLE--QLRARIKELAArapAWLAAQDALERLREQSGEALADSQ 626
|
410 420
....*....|....*....|....*....
gi 2462622363 914 EADEEKERILAQLRELEKKKKLEDAKSQE 942
Cdd:COG3096 627 EVTAAMQQLLEREREATVERDELAARKQA 655
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
246-755 |
4.39e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 246 SLESLEGQPVTTQDRQEAFE------RFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQ 319
Cdd:PRK02224 221 EIERYEEQREQARETRDEADevleehEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 320 SCEelKSDLNTKNELLKQKTIEltracQKQYELEQELAFYKIDAKfEPLNYYPSEYAEIDKAPDEspyigkSRYKRNMFA 399
Cdd:PRK02224 301 EAG--LDDADAEAVEARREELE-----DRDEELRDRLEECRVAAQ-AHNEEAESLREDADDLEER------AEELREEAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 400 T-ESYIIDSAQAVQIKKMEPDEqlrndhmnlrghtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE 478
Cdd:PRK02224 367 ElESELEEAREAVEDRREEIEE--------------LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 479 EAIQLKKEALDlelqmEKQKQEIAGK----QKEIKDLQIAiDSLDSKDPKHSHMKAQKSGKEQQLDIMNKQYQQLESrLD 554
Cdd:PRK02224 433 ATLRTARERVE-----EAEALLEAGKcpecGQPVEGSPHV-ETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-LV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 555 EILSRIAKETEEIKDLEEQLTEGQIAANEALKKdlegvISGLQEYLGTIKGQATQAQNECRKLRDEKE-------TLLQR 627
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETIEEKRER-----AEELRERAAELEAEAEEKREAAAEAEEEAEeareevaELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 628 LTEVEQERDQLEIVA---MDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLN-LRDAEANQLKEELEk 703
Cdd:PRK02224 581 LAELKERIESLERIRtllAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDeARIEEAREDKERAE- 659
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 704 vTRLTQLEQSAlqAELEKERQALKNALGKAqfsEEKEQENSELHAKLKHLQD 755
Cdd:PRK02224 660 -EYLEQVEEKL--DELREERDDLQAEIGAV---ENELEELEELRERREALEN 705
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1882-2064 |
5.18e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1882 DISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQK 1961
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1962 ------SKLDQVL---------------SKVLAAEERVRTLQEEERwcESLEKTLSQTKRQLSEREQQLveksGELLALQ 2020
Cdd:COG3883 97 rsggsvSYLDVLLgsesfsdfldrlsalSKIADADADLLEELKADK--AELEAKKAELEAKLAELEALK----AELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462622363 2021 KEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEK 2064
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
258-732 |
5.35e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 258 QDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQ 337
Cdd:COG1196 284 EEAQAEEYE-LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 338 KTIELTRACQKQYELEQELAfykidakfeplnyypSEYAEIDKApdespyigksrykrnmfatesyiiDSAQAVQIKKME 417
Cdd:COG1196 363 AEEALLEAEAELAEAEEELE---------------ELAEELLEA------------------------LRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 418 PDEQLRNDHMNLRGHtpLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQ 497
Cdd:COG1196 404 ELEEAEEALLERLER--LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 498 KQEIAGKQKEIKDLQIAI---DSLDSKDPKHSHMKAQKSGKEQQLDIM--------------------NKQYQQLESRLD 554
Cdd:COG1196 482 LLEELAEAAARLLLLLEAeadYEGFLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaaalqNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 555 EI---------------LSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYL------------------- 600
Cdd:COG1196 562 AIeylkaakagratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgrtlvaarleaalrravt 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 601 ---------GTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQ 671
Cdd:COG1196 642 lagrlrevtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 672 TQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKnALGK 732
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE-ALGP 781
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1287-1928 |
6.03e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1287 HCNVPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECE---VEELHRTVQKRQ 1363
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrlLQTLHSQEIHIR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1364 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1443
Cdd:TIGR00618 359 DAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1444 SLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKiVAAKDSDFQCLSKKKEK------ 1517
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIhpnpar 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1518 -LTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAK 1596
Cdd:TIGR00618 518 qDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1597 ADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTEL--- 1673
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELlas 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1674 -KNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESra 1752
Cdd:TIGR00618 678 rQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV-- 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1753 lqscveclSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdisAMQQ 1832
Cdd:TIGR00618 756 --------LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN---LQCE 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1833 QLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQkdisewanrfedcqkEEETKQQQLQVLQNEIE 1912
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKII---------------QLSDKLNGINQIKIQFD 889
|
650
....*....|....*.
gi 2462622363 1913 ENKLKLVQQEMMFQRL 1928
Cdd:TIGR00618 890 GDALIKFLHEITLYAN 905
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
544-1098 |
6.26e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 544 KQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIKGQATQAQNECRKLRDEKET 623
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPE--------LREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 624 LLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEK 703
Cdd:PRK03918 257 LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 704 VTRLTQLEQsaLQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNnlLKQQLKDFQNHLNHVVDGLVRPEE 783
Cdd:PRK03918 337 EERLEELKK--KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 784 VAARVDELRRKLKLGTGEM-NIHSPSDVLGKSL-----ADLQKQFSEILARSKWERDEAQVRERKLQE-----EMALQQE 852
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELkKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKelrelEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 853 KLATGQEEFRQACERALEARMNFDKRQHEARIQQMENeihyLQENLKSME-EIQGLTD--LQLQEADEEKERILAQLREL 929
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKgEIKSLKKelEKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 930 EKKKKLEDAKSQEQVFGLDKELKKLKKAVAT------SDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRK 1003
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1004 AAQAARDLTRAEAEiELLQNLLRQKGEQFRLEMEKtgvgTGANSQVLEIEKLNETMERQRTEIARLQNVLDLtgsdnkgg 1083
Cdd:PRK03918 649 LEELEKKYSEEEYE-ELREEYLELSRELAGLRAEL----EELEKRREEIKKTLEKLKEELEEREKAKKELEK-------- 715
|
570
....*....|....*
gi 2462622363 1084 FENVLEEIAELRREV 1098
Cdd:PRK03918 716 LEKALERVEELREKV 730
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1310-2132 |
6.82e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1310 LKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEceveelhrtvqkrqqqkdfidgnvESLMTELEiekslkhh 1389
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQ------------------------EQLQAETE-------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1390 edIVDEIECIEKTLLKRRSELREadrLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKA 1469
Cdd:pfam01576 55 --LCAEAEEMRARLAARKQELEE---ILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTT 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1470 DQQLRSLQADAKDLEQhkikQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE-MAERNEDHHLQVLKESEV 1548
Cdd:pfam01576 130 EAKIKKLEEDILLLED----QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEaMISDLEERLKKEEKGRQE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1549 LLQAKR---AELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQ---AKADLQEALRLGETEVTEKCNHIREVKS 1622
Cdd:pfam01576 206 LEKAKRkleGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaQKNNALKKIRELEAQISELQEDLESERA 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1623 LLEELSFQKGELNVQISERKTQLtlikqEIEKEEENLQVVLRqmSKHKTELKNILDMLQLE--NHE--LQGLKLQHDQRV 1698
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEALKTEL-----EDTLDTTAAQQELR--SKREQEVTELKKALEEEtrSHEaqLQEMRQKHTQAL 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1699 SELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIE----RMTAESRALQSCVECLSKEKEDLQEKCDIW 1774
Cdd:pfam01576 359 EELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEhkrkKLEGQLQELQARLSESERQRAELAEKLSKL 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1775 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLS-------LHNDISAMQQQLQEKREAVNSLQEE 1847
Cdd:pfam01576 439 QSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrqLEDERNSLQEQLEEEEEAKRNVERQ 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1848 LANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQR 1927
Cdd:pfam01576 519 LSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSN 598
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1928 LQKER------------------------ESEESKLETSKVTL-------KEQQHQLEKELTDQKSKLDQVLSKVLAAEE 1976
Cdd:pfam01576 599 LEKKQkkfdqmlaeekaisaryaeerdraEAEAREKETRALSLaraleeaLEAKEELERTNKQLRAEMEDLVSSKDDVGK 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1977 RVRTLQEEERwceSLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSL---LRNQFLTERKKA-EKQVASLK 2052
Cdd:pfam01576 679 NVHELERSKR---ALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERdlqARDEQGEEKRRQlVKQVRELE 755
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2053 EALKIQRSQleKNLLMANQKDLErrqMEISDAMRTLKSEVK--DEIRTSLKNLNQFLPELPADL-EAILERNENLEGELE 2129
Cdd:pfam01576 756 AELEDERKQ--RAQAVAAKKKLE---LDLKELEAQIDAANKgrEEAVKQLKKLQAQMKDLQRELeEARASRDEILAQSKE 830
|
...
gi 2462622363 2130 SLK 2132
Cdd:pfam01576 831 SEK 833
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1692-2001 |
7.35e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 7.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1692 LQHDQRVSELEKTQvavLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESrALQSCVECLSKEKEDLQEKC 1771
Cdd:pfam17380 278 VQHQKAVSERQQQE---KFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQA-AIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1772 DIWEKKLAQTK-RVLAAAEENSKM---EQSNLEKLELNVRkLQQELDQLNRDKLSLHNDISAMQQQLQEKrEAVNSLQEE 1847
Cdd:pfam17380 354 RQEERKRELERiRQEEIAMEISRMrelERLQMERQQKNER-VRQELEAARKVKILEEERQRKIQQQKVEM-EQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1848 LANVQ-DHLNLAKQDLLHTTKHQDVLLSEQT-RLQKDISEWANRFEDCQKEEETKQ----QQLQVLQNEIEENKLKLVQQ 1921
Cdd:pfam17380 432 ARQREvRRLEEERAREMERVRLEEQERQQQVeRLRQQEEERKRKKLELEKEKRDRKraeeQRRKILEKELEERKQAMIEE 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1922 EMMFQRLQKERESEESKL-ETSKVTLKEQQHQLEKELTDQKSKLDQVLskvLAAEERVRtLQEEERWCESLEKTLSQTKR 2000
Cdd:pfam17380 512 ERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMR---KATEERSR-LEAMEREREMMRQIVESEKA 587
|
.
gi 2462622363 2001 Q 2001
Cdd:pfam17380 588 R 588
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1329-2056 |
7.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1329 KEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQQKDfidgnveslmtELEIEKSLKHHEDIVDEIECIEKTLLKRRS 1408
Cdd:COG4913 235 DDLERAHEALEDAREQIELLE-PIRELAERYAAARERLA-----------ELEYLRAALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1409 ELREADRLLAEAESELsctkektKNAVEKFTDAKRSLLQTESDA-EELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1487
Cdd:COG4913 303 ELARLEAELERLEARL-------DALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1488 IKQEEILKEINKIVAAKdsdfqclskkKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQ 1567
Cdd:COG4913 376 PASAEEFAALRAEAAAL----------LEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1568 QQEM-AVLDRQLGHKKEELHLLqGSMVQAKADLQE------------ALRLgetEVTEKcnHIREVKSLLEELSFqKGEL 1634
Cdd:COG4913 442 LLALrDALAEALGLDEAELPFV-GELIEVRPEEERwrgaiervlggfALTL---LVPPE--HYAAALRWVNRLHL-RGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1635 NVQiserktqltlikqeiekeeeNLQVVLRQMSKHKTELKNILDMLQLENHELQG-LKLQHDQR--------VSELEKTQ 1705
Cdd:COG4913 515 VYE--------------------RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRfdyvcvdsPEELRRHP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1706 VAVLEEKlelenlqQISQ-QQKGEIEWQKQL-------------LERDKREIERMTAESRALQSCVECLSKEKEDLQEKC 1771
Cdd:COG4913 575 RAITRAG-------QVKGnGTRHEKDDRRRIrsryvlgfdnrakLAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1772 DIWEKKLAQTkrvlaaaeenskMEQSNLEKLELNVRKLQQELDQLNRDklslHNDISAMQQQLQEKREAVNSLQEELAnv 1851
Cdd:COG4913 648 EALQRLAEYS------------WDEIDVASAEREIAELEAELERLDAS----SDDLAALEEQLEELEAELEELEEELD-- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1852 qdhlnlakqdllhttkhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVqQEMMFQRLQKE 1931
Cdd:COG4913 710 --------------------------ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL-EERFAAALGDA 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1932 RESEESK-LETSKVTLKEQQHQLEKELTDQKSKLDQV-LSKVLAAEERVRTLQEEERWCESLEktlsqtkrqlserEQQL 2009
Cdd:COG4913 763 VERELREnLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADLESLPEYLALLDRLE-------------EDGL 829
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 2462622363 2010 VEKSGELLALQKEAdsMRADFSLLRNQFLTERKKAEKQVASLKEALK 2056
Cdd:COG4913 830 PEYEERFKELLNEN--SIEFVADLLSKLRRAIREIKERIDPLNDSLK 874
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1462-1647 |
8.05e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 8.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1462 TAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQ 1541
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1542 VLKES--------------EVLLQAK-------RAE-LEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADL 1599
Cdd:COG3883 87 ELGERaralyrsggsvsylDVLLGSEsfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462622363 1600 QEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTL 1647
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
435-870 |
9.39e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 9.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 435 LDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEE-AIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQI 513
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQrAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 514 AIDSLDSKdpkHSHMKAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQL--TEGQIAANEALKKDLEG 591
Cdd:pfam10174 374 EKSTLAGE---IRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSsnTDTALTTLEEALSEKER 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 592 VISGLQEylgtikgqatQAQNECRklrdeketllQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQ 671
Cdd:pfam10174 451 IIERLKE----------QREREDR----------ERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLAS 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 672 TQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQ-----AELEKERQALKNALGKAQFSEE------KE 740
Cdd:pfam10174 511 SGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEindriRLLEQEVARYKEESGKAQAEVErllgilRE 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 741 QENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGlvRPEEVAARVDELRRKLKLGTGEMNIHSpsdvlgksladlQK 820
Cdd:pfam10174 591 VEN-EKNDKDKKIAELESLTLRQMKEQNKKVANIKHG--QQEMKKKGAQLLEEARRREDNLADNSQ------------QL 655
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 821 QFSEILA---RSKWERDEAQVRERKLQEEMALQQEKLATGQEEFRQACERALE 870
Cdd:pfam10174 656 QLEELMGaleKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILE 708
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1693-2141 |
9.53e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 9.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1693 QHDQRVseLEKTQVAVLEEKLELENLQQISQQQKGeieWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCD 1772
Cdd:pfam15921 74 EHIERV--LEEYSHQVKDLQRRLNESNELHEKQKF---YLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1773 IWEKKLAQTKRVLAAAEENSKMEQSNLEKLELN-------VRKLQQELDQLNRDKLSLHNDIS---------AMQQQLQE 1836
Cdd:pfam15921 149 NTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLShegvlqeIRSILVDFEEASGKKIYEHDSMStmhfrslgsAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1837 KREAVNSLQEELANVQDHLNLAKQDllHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKL 1916
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSE--SQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1917 KLVQQEMMFQRLQKERESEESKLET----SKVTLKEQQHQLEKELTDQKSKLDQvlskvlAAEERVRTLQEEERWCESLE 1992
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSelreAKRMYEDKIEELEKQLVLANSELTE------ARTERDQFSQESGNLDDQLQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1993 KTLSQTKRQlsEREQQLVEKSGELLALQKEADSMRADFslLRNQfLTERKKAEKQVASLKEALKIQ-RSQLEKNL--LMA 2069
Cdd:pfam15921 381 KLLADLHKR--EKELSLEKEQNKRLWDRDTGNSITIDH--LRRE-LDDRNMEVQRLEALLKAMKSEcQGQMERQMaaIQG 455
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 2070 NQKDLER-----RQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENLPFTMNE 2141
Cdd:pfam15921 456 KNESLEKvssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE 532
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
493-739 |
1.01e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 493 QMEK-QKQEIAGKQKEIKDLQIAIDSLDSKdpkhshMKAQKSGKEQQldimNKQYQQLESRLDEILSRIAKETEEIKDLE 571
Cdd:PHA02562 167 EMDKlNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQ----RKKNGENIARKQNKYDELVEEAKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 572 EQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKE--TLLQ-------RLTEVEQERDQLEIVA 642
Cdd:PHA02562 237 EELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRITKIKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 643 MDAENMRKELAELESALQEQ----HEVNASLQQTQGDLSAYeaelearlnlrDAEANQLKEELEKVTRLTQLEQSALqAE 718
Cdd:PHA02562 316 EKLDTAIDELEEIMDEFNEQskklLELKNKISTNKQSLITL-----------VDKAKKVKAAIEELQAEFVDNAEEL-AK 383
|
250 260
....*....|....*....|.
gi 2462622363 719 LEKERQALKNAlgKAQFSEEK 739
Cdd:PHA02562 384 LQDELDKIVKT--KSELVKEK 402
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1749-1977 |
1.05e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1749 ESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLnRDKLSlhNDIS 1828
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER-REELG--ERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1829 AMQQQlqekrEAVNSLQEELANVQDHlnlakQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQ 1908
Cdd:COG3883 94 ALYRS-----GGSVSYLDVLLGSESF-----SDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622363 1909 NEIEENKLKLvqqemmfQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEER 1977
Cdd:COG3883 164 AELEAAKAEL-------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1327-1641 |
1.11e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1327 SEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDfiDGNVESLMTELE-------IEKSLKHHEDIVDEIECI 1399
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLE--AGKCPECGQPVEgsphvetIEEDRERVEELEAELEDL 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1400 EKTLLKRRSELREADRLlAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAvnlVKADQQlrslQAD 1479
Cdd:PRK02224 488 EEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE---AEAEEK----REA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1480 AKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSK------KKEKLTEELQKLQ-KDIEMAERNEDH--HLQVLKESEVLL 1550
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERirtllaAIADAEDEIERLReKREALAELNDERreRLAEKRERKREL 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1551 QAK--RAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGS--MVQAKADLQEALRLGETEVTEKCNHIREVKSLLEE 1626
Cdd:PRK02224 640 EAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigAVENELEELEELRERREALENRVEALEALYDEAEE 719
|
330
....*....|....*
gi 2462622363 1627 LSFQKGELNVQISER 1641
Cdd:PRK02224 720 LESMYGDLRAELRQR 734
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1436-2212 |
1.13e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1436 EKFTDAKRSLLQTESDAEELERRAQETAVNLVK-ADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAK---DSDFQCL 1511
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERlRREREKAERYQALLKEKREYEGYELLKEKEALERQKeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1512 SKKKEKLTEELQKLQKDIEMAERN-EDHHLQVLKESEVLLQAKRAELEKLKSQVTSqqqemavLDRQLGHKKEELHllqg 1590
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIAS-------LERSIAEKERELE---- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1591 smvqakaDLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHK 1670
Cdd:TIGR02169 319 -------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1671 TEL---KNILDMLQLENHELQGLKLQHDQRVSELEktqvavleeklelenlqqisQQQKGEIEWQKQLLERDKREIERMT 1747
Cdd:TIGR02169 392 EKLeklKREINELKRELDRLQEELQRLSEELADLN--------------------AAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1748 AESRALQSCVECLSKEKE---DLQEKCDIWEKKLAQTKRVLAAAEEnskmEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1824
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1825 NDISAMQQQLQEKRE--AVNSLQ----EELANVQDHLNLAKQ------DLLHTTKHQDVLLSEQTRLQKDISEWANRFED 1892
Cdd:TIGR02169 528 AQLGSVGERYATAIEvaAGNRLNnvvvEDDAVAKEAIELLKRrkagraTFLPLNKMRDERRDLSILSEDGVIGFAVDLVE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1893 CQKEEETKQQQL---QVLQNEIEENKLKLVQQEMM----------------------FQRLQKERESEESKLETSKVTLK 1947
Cdd:TIGR02169 608 FDPKYEPAFKYVfgdTLVVEDIEAARRLMGKYRMVtlegelfeksgamtggsraprgGILFSRSEPAELQRLRERLEGLK 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1948 EQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMR 2027
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI---EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2028 ADFSLLrnqflterkkaEKQVASLKEALKiqrsqleknllmanqkDLERR-QMEISDAMRTLKSEVKDEIRTSLKNLNqf 2106
Cdd:TIGR02169 765 ARIEEL-----------EEDLHKLEEALN----------------DLEARlSHSRIPEIQAELSKLEEEVSRIEARLR-- 815
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2107 lpelpaDLEAILERNENLEGELESLKENLpftmnegpfEEKLNFSQVHIMDEHWRGEALREKLRHREDRLKaqlrhcmSK 2186
Cdd:TIGR02169 816 ------EIEQKLNRLTLEKEYLEKEIQEL---------QEQRIDLKEQIKSIEKEIENLNGKKEELEEELE-------EL 873
|
810 820
....*....|....*....|....*.
gi 2462622363 2187 QAEVlikgkRQTEGTLHSLRRQVDAL 2212
Cdd:TIGR02169 874 EAAL-----RDLESRLGDLKKERDEL 894
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
453-922 |
1.14e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 453 LSELHDEIEKAEQQILRATEEFKQLEEAIQlkkealDLELQMEkqkQEIAGKQKeikdLQIAIDSLDSKDPKhshMKAQK 532
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKMQQHIQ------DLEEQLD---EEEAARQK----LQLEKVTTEAKIKK---LEEDI 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 533 SGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIK--------------DLEEQLT--EGQIAANEALKKDLEGVISGL 596
Cdd:pfam01576 141 LLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKslsklknkheamisDLEERLKkeEKGRQELEKAKRKLEGESTDL 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 597 QEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAE-LESALQEQHEVNASLQQTQGD 675
Cdd:pfam01576 221 QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEE 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 676 LSAYEAELEARLNL----------RDAEANQLKEELEKVTR--------LTQLEQSALQAELEKERQALKNALGKAQFSE 737
Cdd:pfam01576 301 LEALKTELEDTLDTtaaqqelrskREQEVTELKKALEEETRsheaqlqeMRQKHTQALEELTEQLEQAKRNKANLEKAKQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 738 EKEQENSELHAKLKHLQD-------DNNLLKQQLKDFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGTGEMN-IHSPSD 809
Cdd:pfam01576 381 ALESENAELQAELRTLQQakqdsehKRKKLEGQLQELQARLS---ESERQRAELAEKLSKLQSELESVSSLLNeAEGKNI 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 810 VLGKSLADLQKQF---SEILARSKWERDEAQVRERKLQEEMALQQEKLATgQEEFRQACERALEArMNFDKRQHEARIQQ 886
Cdd:pfam01576 458 KLSKDVSSLESQLqdtQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLST-LQAQLSDMKKKLEE 535
|
490 500 510
....*....|....*....|....*....|....*.
gi 2462622363 887 MENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERI 922
Cdd:pfam01576 536 DAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKL 571
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1403-2107 |
1.17e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1403 LLKRRSELREADRLLAEAESELSCTK-EKTKNAVE----KFTDAKRSLLQTESDAE--ELERRAQETAVNLVKADQQL-- 1473
Cdd:pfam12128 155 LGRERVELRSLARQFALCDSESPLRHiDKIAKAMHskegKFRDVKSMIVAILEDDGvvPPKSRLNRQQVEHWIRDIQAia 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1474 ---------RSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIE--MAERNEDhhlqv 1542
Cdd:pfam12128 235 gimkirpefTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKekRDELNGE----- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1543 LKESEVLLQAKRAELEKLKSQVTSQQQEmavldrqlGHKKEELHLLQGSMVQAKADLQEALRLGETE----VTEKCNHIR 1618
Cdd:pfam12128 310 LSAADAAVAKDRSELEALEDQHGAFLDA--------DIETAAADQEQLPSWQSELENLEERLKALTGkhqdVTAKYNRRR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1619 EVKS--LLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQvvlRQMSKHKTELKNILDMLQLENHELQG------- 1689
Cdd:pfam12128 382 SKIKeqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLrlnqata 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1690 ---LKLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQ--------SCVE 1758
Cdd:pfam12128 459 tpeLLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELElqlfpqagTLLH 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1759 CLSKEKEDlqekcdiWEKKLAqtkRVLAAA-----------EENSKMEQSNLEKLELNVRKLQ-----QELDQLNRDKLS 1822
Cdd:pfam12128 539 FLRKEAPD-------WEQSIG---KVISPEllhrtdldpevWDGSVGGELNLYGVKLDLKRIDvpewaASEEELRERLDK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1823 LHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedcQKEEETKQQ 1902
Cdd:pfam12128 609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNK--------ALAERKDSA 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1903 QLQVLQNEIEENKLKLVQQEMM-----------FQRLQKERESEESK----------LETSKVTLKEQQHQLEKELTDQK 1961
Cdd:pfam12128 681 NERLNSLEAQLKQLDKKHQAWLeeqkeqkrearTEKQAYWQVVEGALdaqlallkaaIAARRSGAKAELKALETWYKRDL 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1962 SKLDQVLSKVLAAEERVRTL-----------QEEERWCESLEKTLSQTKRQLSEreqQLVEKSGELLALQKEADSMRADF 2030
Cdd:pfam12128 761 ASLGVDPDVIAKLKREIRTLerkieriavrrQEVLRYFDWYQETWLQRRPRLAT---QLSNIERAISELQQQLARLIADT 837
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 2031 SLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLMANQKDLERRQMEISDAMRTLkSEVKDEIRTSLKNLNQFL 2107
Cdd:pfam12128 838 KLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQL-EDLKLKRDYLSESVKKYV 913
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1793-2116 |
1.17e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 44.27 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1793 KMEQSNLEKLELNVRKLQQ-----------ELDQLNRDKLSLHNDISAMQ----QQLQEKREAVNSLQEELANVQDHLNL 1857
Cdd:PTZ00108 995 KRKEYLLGKLERELARLSNkvrfikhvingELVITNAKKKDLVKELKKLGyvrfKDIIKKKSEKITAEEEEGAEEDDEAD 1074
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1858 AKQDLLHT--TKHQDVLLSEQ-TRLQKDisewanRFEDCQKEEETKQQQLQVLQN-EIEE------NKLKLVQQEMMFQR 1927
Cdd:PTZ00108 1075 DEDDEEELgaAVSYDYLLSMPiWSLTKE------KVEKLNAELEKKEKELEKLKNtTPKDmwledlDKFEEALEEQEEVE 1148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1928 LQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERwceSLEKTLSQTKRQLSEREQ 2007
Cdd:PTZ00108 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR---KLDDKPDNKKSNSSGSDQ 1225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2008 QLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLMANQKDLERRQMEISDAMRT 2087
Cdd:PTZ00108 1226 EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSP 1305
|
330 340
....*....|....*....|....*....
gi 2462622363 2088 LKSEVKDEIRTSLKNLNQFLPELPADLEA 2116
Cdd:PTZ00108 1306 TKKKVKKRLEGSLAALKKKKKSEKKTARK 1334
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1780-2071 |
1.18e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1780 QTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAK 1859
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1860 QDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKL 1939
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1940 ETSKVTLKEQQHQLEKELTDQKSKLDQ---VLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGEL 2016
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKlieSLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 2017 LALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLMANQ 2071
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALED 315
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1691-2110 |
1.23e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1691 KLQHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQscVECLS---KEKEDL 1767
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE--AQIRGnggDRLEQL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1768 QEKCDIWEKKLAQTKRVLAAAEENSKM----EQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNS 1843
Cdd:COG4913 344 EREIERLERELEERERRRARLEALLAAlglpLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1844 LQEELANVQ------------------DHLNLAKQDL-----------------------LHT--------TKHQDVLLS 1874
Cdd:COG4913 424 LEAEIASLErrksniparllalrdalaEALGLDEAELpfvgelievrpeeerwrgaiervLGGfaltllvpPEHYAAALR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1875 --EQTRLQK---------------------------------DISEWAN----RFED---CQKEEETKQ----------- 1901
Cdd:COG4913 504 wvNRLHLRGrlvyervrtglpdperprldpdslagkldfkphPFRAWLEaelgRRFDyvcVDSPEELRRhpraitragqv 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1902 --------------------------QQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLET---------SKVTL 1946
Cdd:COG4913 584 kgngtrhekddrrrirsryvlgfdnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlaeyswDEIDV 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1947 KEQQHQLEkELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSM 2026
Cdd:COG4913 664 ASAEREIA-ELEAELERLDASSDDLAALEEQLEELEAEL---EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2027 RADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEknllmANQKDLERRQMEISDAMRTLKSE---VKDEIRTSLKNL 2103
Cdd:COG4913 740 EDLARLELRALLEERFAAALGDAVERELRENLEERID-----ALRARLNRAEEELERAMRAFNREwpaETADLDADLESL 814
|
....*..
gi 2462622363 2104 NQFLPEL 2110
Cdd:COG4913 815 PEYLALL 821
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1468-1571 |
1.35e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1468 KADQQLRSLQADAKD-LEQHKIKQEEILKEinKIVAAKD------SDFQCLSKKKEKlteELQKLQKDIEMAERNEDHHL 1540
Cdd:PRK12704 28 IAEAKIKEAEEEAKRiLEEAKKEAEAIKKE--ALLEAKEeihklrNEFEKELRERRN---ELQKLEKRLLQKEENLDRKL 102
|
90 100 110
....*....|....*....|....*....|.
gi 2462622363 1541 QVLKESEVLLQAKRAELEKLKSQVTSQQQEM 1571
Cdd:PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEEL 133
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1497-1956 |
1.42e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1497 INKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKEsevlLQAKRAELEKLKSQVTSQQQEMAVLDR 1576
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1577 QLGHKkeelhllqgSMVQAKADLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEE 1656
Cdd:COG4717 124 LLQLL---------PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1657 ENLQVVLRQMSKHKTELKNILDMLQ---------LENHELQGLKLQHDQRVSELEKTQVAV----------LEEKLELEN 1717
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQeeleeleeeLEQLENELEAAALEERLKEARLLLLIAaallallglgGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1718 LQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQS 1797
Cdd:COG4717 275 IAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1798 NLEKL--ELNVRKLQQELDQL-NRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvLLS 1874
Cdd:COG4717 355 EAEELeeELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1875 EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLvQQEMMFQRLQkERESEESKLETSKVTLKEQQHQLE 1954
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ-ELEELKAELR-ELAEEWAALKLALELLEEAREEYR 510
|
..
gi 2462622363 1955 KE 1956
Cdd:COG4717 511 EE 512
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1411-1965 |
1.65e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1411 READRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLE---QHK 1487
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKmslQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1488 IKQEEILKEinkivaakdsDFQCLSKKKEKLTEElqklqKDIEMAERNEDH--HLQVLKESEVLLQAKRAELEKLKSQVT 1565
Cdd:pfam05483 309 MSTQKALEE----------DLQIATKTICQLTEE-----KEAQMEELNKAKaaHSFVVTEFEATTCSLEELLRTEQQRLE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1566 SQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALR-LGETEVTEKCNhiREVKSLLEELSFQKGELNVQISERKTQ 1644
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKiLAEDEKLLDEK--KQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1645 LTLIKQEIEKEEENLQVVLRQMSKHKTELknildmlqlENHELQGLKLQHDQRVSELEK---TQVAVLEEKLELENLQQI 1721
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTEL---------EKEKLKNIELTAHCDKLLLENkelTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1722 SQQQKGEIEWQKQLLERDKREiermTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1801
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKE----MNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1802 LELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQ----DHLNLAKQDLLHTTKHQDVLLSEQT 1877
Cdd:pfam05483 599 LKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKqkfeEIIDNYQKEIEDKKISEEKLLEEVE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1878 RLQKDISEWANRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLetsKVTLKEQQHQLEKEL 1957
Cdd:pfam05483 679 KAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA---KAALEIELSNIKAEL 755
|
....*...
gi 2462622363 1958 TDQKSKLD 1965
Cdd:pfam05483 756 LSLKKQLE 763
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
1.65e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.00 E-value: 1.65e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 2462622363 170 NLQKLNLAGNEIEHIPvwLGKKLKSLRVLNLKGN-KISSLQDISK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1399-1559 |
1.68e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1399 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ--ETAVNLVKADQQLRSL 1476
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1477 QADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDIEMAernedhhLQVLKESEVLLQAKRAE 1556
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 2462622363 1557 LEK 1559
Cdd:COG1579 168 LAA 170
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
564-772 |
1.72e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 564 TEEIKDLEEQLTEGQIAANEALkkdlEGVISGLQEYlgtiKGQATQAQnECRKLRDEKETLLQRL-TEVEQERDQLEIVA 642
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEAL----QSALNWLEER----KGSLERAK-QYQQVIDNFPKLSAELrQQLNNERDEPRSVP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 643 --MDAENMRKELAELESAL--------QEQ---HEVNASLQQTQGDLSayeaelEARLNLRDAEaNQLKEELEKVTRLTQ 709
Cdd:PRK10929 100 pnMSTDALEQEILQVSSQLleksrqaqQEQdraREISDSLSQLPQQQT------EARRQLNEIE-RRLQTLGTPNTPLAQ 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 710 LEQSALQAELEKeRQALKNALGKAQFSEEKEQENSELHAKLkhLQDDNNLLKQQLKDFQNHLN 772
Cdd:PRK10929 173 AQLTALQAESAA-LKALVDELELAQLSANNRQELARLRSEL--AKKRSQQLDAYLQALRNQLN 232
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1372-1636 |
1.72e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.91 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1372 NVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEaesELSCTKEKTKNAVEKFTDAKRSLLqtesd 1451
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE---VLIQKFGRSLKAKKRFSLLKKETI----- 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1452 aeelerrAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDfqcLSKKKEKLTEELQKLQKDIEM 1531
Cdd:COG5022 870 -------YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD---LIENLEFKTELIARLKKLLNN 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1532 AERNEDHHLQVLKESEVL-LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQ---GSMVQAKADLQEALRLGE 1607
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKkelAELSKQYGALQESTKQLK 1019
|
250 260 270
....*....|....*....|....*....|..
gi 2462622363 1608 ---TEVTEKCNHIREVKSLLEELSFQKGELNV 1636
Cdd:COG5022 1020 elpVEVAELQSASKIISSESTELSILKPLQKL 1051
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1292-1487 |
1.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1292 EHHNLENEVSRLEDIMQHLKSKKREERWmraskRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDG 1371
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRL-----ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1372 NVEslmteleiekslkhhEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKftdAKRSLLQTESD 1451
Cdd:COG4913 338 DRL---------------EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALLEALEEE 399
|
170 180 190
....*....|....*....|....*....|....*.
gi 2462622363 1452 AEELERRAQETAVNLVKADQQLRSLQADAKDLEQHK 1487
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
145-206 |
1.86e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.27 E-value: 1.86e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 145 KLLKLRELNLSYNKIskiEG-----IENMCNLQKLNLAGNEIE-HIPVWLGKkLKSLRVLNLKGNKIS 206
Cdd:PLN03150 440 KLRHLQSINLSGNSI---RGnippsLGSITSLEVLDLSYNSFNgSIPESLGQ-LTSLRILNLNGNSLS 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1659-2079 |
1.94e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1659 LQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQVAVLEEKLELENlQQISQQQKGEIEWQKQLLER 1738
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1739 DKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR 1818
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1819 DKLSLhndisAMQQQLQEKR---------------------------EAVNSLQEELANVQDHLNLAKQDLLHTTKHQDV 1871
Cdd:COG4717 235 ELEAA-----ALEERLKEARlllliaaallallglggsllsliltiaGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1872 LLSEQTRLQKDISEWANRFEDCQKEEET-------KQQQLQVLQNEIE--ENKLKLVQQEMMFQRLQKERESEESKLETS 1942
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEellelldRIEELQELLREAEelEEELQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1943 KVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTlqeeerwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKE 2022
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462622363 2023 ADSMRADFSLLRNQFLTERKKAEKQvaslKEALKIQRSQLEKNLLMANQKDLERRQM 2079
Cdd:COG4717 462 LEQLEEDGELAELLQELEELKAELR----ELAEEWAALKLALELLEEAREEYREERL 514
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
544-936 |
2.07e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 544 KQYQQLESRLDEILSRIAKETEEIKDLE------EQLTEGQIAAneALKKDLEGVISGLQEYLGTIKGQATQAQNECRKL 617
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQrlhqafSRFIGSHLAV--AFEADPEAELRQLNRRRVELERALADHESQEQQQ 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 618 RDEKETLLQRLTEVEQERDQLEIvaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEArlnLRDAEAN-- 695
Cdd:PRK04863 864 RSQLEQAKEGLSALNRLLPRLNL--LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV---LQSDPEQfe 938
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 696 QLKEELEKVTrlTQLEQSALQAELEKERQALKNALG--KAQFSEEKEQENSE-LHAKLKHLQDDNNLLKQQLKDFQNHL- 771
Cdd:PRK04863 939 QLKQDYQQAQ--QTQRDAKQQAFALTEVVQRRAHFSyeDAAEMLAKNSDLNEkLRQRLEQAEQERTRAREQLRQAQAQLa 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 772 --NHVVDGLVRPEEVAAR-VDELRRKLKlgtgEMNIHSPSDVLGKSLADlQKQFSEILARSKWERDEAQVRERKLQEEMA 848
Cdd:PRK04863 1017 qyNQVLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMD 1091
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 849 LQQEKLATGQEEFRQACERALEARMNFDKRQHEARIQQMENEIH-----YLQ-ENLKSMEEIqGLTDLQLQEADEEKERi 922
Cdd:PRK04863 1092 NLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHrrelaYLSaDELRSMSDK-ALGALRLAVADNEHLR- 1169
|
410
....*....|....
gi 2462622363 923 lAQLRELEKKKKLE 936
Cdd:PRK04863 1170 -DVLRLSEDPKRPE 1182
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1903-2067 |
2.15e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1903 QLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEqqhqLEKELTDQKSKLDQVLSKVLAAEER----- 1977
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQlgnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1978 ----VRTLQEEErwcESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKE 2053
Cdd:COG1579 87 nnkeYEALQKEI---ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|....
gi 2462622363 2054 ALKIQRSQLEKNLL 2067
Cdd:COG1579 164 EREELAAKIPPELL 177
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1825-2135 |
2.16e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1825 NDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEdCQKEEETKQQQL 1904
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN-LVQTALRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1905 QVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKvtlkEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEE 1984
Cdd:PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAE----EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1985 ERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRAdfslLRNQFL------------TERKKAEKQVASLK 2052
Cdd:PRK04863 427 KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQA----AHSQFEqayqlvrkiageVSRSEAWDVARELL 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2053 EALKIQRSQLEK-NLLMANQKDLERRQMEISDAMRTLKSEVKDEIRTslknlnqflPELPADLEAILERnenLEGELESL 2131
Cdd:PRK04863 503 RRLREQRHLAEQlQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKN---------LDDEDELEQLQEE---LEARLESL 570
|
....
gi 2462622363 2132 KENL 2135
Cdd:PRK04863 571 SESV 574
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1299-1556 |
2.24e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1299 EVSRLEDIMQHLKSKKREERWMRASKRQSE--KEMEELH--HNIDDLLQEKKSLECEVEELHRTVQKRQQQKdfidGNVE 1374
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADelKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE----ARIE 1595
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1375 SLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1454
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1455 LERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQK-DIEMAE 1533
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEE 1755
|
250 260
....*....|....*....|...
gi 2462622363 1534 RNEDHHLQVLKESEVLLQAKRAE 1556
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
535-932 |
2.38e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 535 KEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEA---------LKKDLEGVISGLQEYLGTIKG 605
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaaRKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 606 QATQAQNECRKLRDEKETLLQRLTEVEQERD--QLEIVAMDAE-----------------------NMRKELAELESALQ 660
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklQLEKVTTEAKikkleedillledqnsklskerkLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 661 EQHEVNASLQQTQGDLSAYEAELEARLNlrdaEANQLKEELEKVTRLTQLEQSALQ---AELEKERQALKNALGKaqfse 737
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQLAK----- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 738 eKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKL--KLGTGEMNIHSPSDVLGKSL 815
Cdd:pfam01576 241 -KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLgeELEALKTELEDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 816 ADLQKQFSEILARSKWERDEAQVRERKLQEemalQQEKLATGQEEFRQACERALEARMNFDKRQheariQQMENEIHYLQ 895
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQE----MRQKHTQALEELTEQLEQAKRNKANLEKAK-----QALESENAELQ 390
|
410 420 430
....*....|....*....|....*....|....*..
gi 2462622363 896 ENLKSMEEIQgltdlqlQEADEEKERILAQLRELEKK 932
Cdd:pfam01576 391 AELRTLQQAK-------QDSEHKRKKLEGQLQELQAR 420
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1427-1862 |
2.66e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1427 TKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQhKIKQEEILKEINKIVAAKDS 1506
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1507 DFQCLSKKKEKLtEELQKLQKDIEMAERNEDHHLQVLKES-EVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEEL 1585
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1586 HLLQGSMVQAKADLQealRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQ 1665
Cdd:COG4717 223 EELEEELEQLENELE---AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1666 MSKHKTELKNILDMLQLENHELQGLKlqHDQRVSELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIer 1745
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELL--AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL-- 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1746 mtaesralqsCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE-LNVRKLQQELDQLNRDKLSLH 1824
Cdd:COG4717 376 ----------LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaLDEEELEEELEELEEELEELE 445
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2462622363 1825 NDISAMQQQLQEKREAVNSL--QEELANVQDHLNLAKQDL 1862
Cdd:COG4717 446 EELEELREELAELEAELEQLeeDGELAELLQELEELKAEL 485
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1826-1984 |
3.00e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1826 DISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQK--EEETKQQQ 1903
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1904 LQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQE 1983
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELA----ELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
.
gi 2462622363 1984 E 1984
Cdd:COG1579 167 E 167
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
468-763 |
3.27e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 468 LRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDS-----------LDSKDPKHSHMKAQKSGKE 536
Cdd:pfam05483 202 LRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEkenkmkdltflLEESRDKANQLEEKTKLQD 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 537 QQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEE----------QLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQ 606
Cdd:pfam05483 282 ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEdlqiatkticQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 607 ATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEV---NASLQQTQGDLSAYEAEL 683
Cdd:pfam05483 362 EELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKGKEQEL 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 684 EARLNLRDAEANQLKEELEKVTRLTQL---EQSALQAELEKERqaLKNALGKAQF------SEEKEQENSELHAKLKHLQ 754
Cdd:pfam05483 442 IFLLQAREKEIHDLEIQLTAIKTSEEHylkEVEDLKTELEKEK--LKNIELTAHCdkllleNKELTQEASDMTLELKKHQ 519
|
....*....
gi 2462622363 755 DDNNLLKQQ 763
Cdd:pfam05483 520 EDIINCKKQ 528
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1774-1936 |
3.67e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1774 WEKKLAQTKRVLAAAE-----ENSKMEQSNLEKL-ELNVR----KLQQELDQLNRDKLslhNDISAMQQQLQEKREAVNS 1843
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEakrilEEAKKEAEAIKKEaLLEAKeeihKLRNEFEKELRERR---NELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1844 LQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanRFEDCQK--EEETKQQQLQVLQNEIEENKLKLVQQ 1921
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERISGltAEEAKEILLEKVEEEARHEAAVLIKE 177
|
170
....*....|....*
gi 2462622363 1922 EMMFQRLQKERESEE 1936
Cdd:PRK12704 178 IEEEAKEEADKKAKE 192
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-216 |
3.79e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.96 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 86 ALIKKLTKQDNLALIKSLNLSLSKDGGKKFkyIENLEKCV-KLEVLNLSYNLI--GKIEKLDKLL----KLRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALranrDLKELNLANNG 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462622363 159 ISKiEGIENMC-------NLQKLNLAGNEIEHIPV----WLGKKLKSLRVLNLKGNKISSLqDISKLKP 216
Cdd:cd00116 177 IGD-AGIRALAeglkancNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDA-GAAALAS 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1418-2119 |
3.90e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1418 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKIKQEEILKEI 1497
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1498 NKIVAAK---DSDFQCLSKKKE--------------------------KLTEELQKLQ--KDIEMAERNEDhhLQVLKES 1546
Cdd:PTZ00121 1140 RKAEEARkaeDAKRVEIARKAEdarkaeearkaedakkaeaarkaeevRKAEELRKAEdaRKAEAARKAEE--ERKAEEA 1217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1547 EVLLQAKRAELEKLKSQVTSQQQEM----AVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVTEKCNHIREVKS 1622
Cdd:PTZ00121 1218 RKAEDAKKAEAVKKAEEAKKDAEEAkkaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1623 LLE----ELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRV 1698
Cdd:PTZ00121 1298 AEEkkkaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1699 SELEKTQVAVLEEKLELENLQQISQQQKGEIEWQKQLLERDKREIERMTAESRALQScvecLSKEKEDLQEKCDIWEKKL 1778
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD----EAKKKAEEAKKADEAKKKA 1453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1779 AQTKRVLAA---AEENSKMEQSNLEKLElnvrklQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHL 1855
Cdd:PTZ00121 1454 EEAKKAEEAkkkAEEAKKADEAKKKAEE------AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1856 NLA--KQDLLHTTKHQDVLLSEQTRLQKDI--SEWANRFEDCQKEEETKQQQLQVLQ--NEIEENKLKLVQ---QEMMFQ 1926
Cdd:PTZ00121 1528 KKAeeAKKADEAKKAEEKKKADELKKAEELkkAEEKKKAEEAKKAEEDKNMALRKAEeaKKAEEARIEEVMklyEEEKKM 1607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1927 RLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSERE 2006
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2007 QQLVEksgellALQKEADSMRaDFSLLRNQFLTERKKAEkQVASLKEALKIQRSQLEKNLLMANQKDLERRQMEisdamr 2086
Cdd:PTZ00121 1688 KKAAE------ALKKEAEEAK-KAEELKKKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE------ 1753
|
730 740 750
....*....|....*....|....*....|...
gi 2462622363 2087 tlksEVKDEIRTSLKNLNQFLPELPADLEAILE 2119
Cdd:PTZ00121 1754 ----EEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
440-772 |
3.92e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 42.37 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 440 EDKEKKISAAQTRLSELHdeiekaeqqilRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLD 519
Cdd:pfam05622 90 EELEKEVLELQHRNEELT-----------SLAEEAQALKDEMDILRESSDKVKKLEATVETYKKKLEDLGDLRRQVKLLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 520 SKDPKHSHMKAQ-------KSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLtegqiaanEALKKDLEGV 592
Cdd:pfam05622 159 ERNAEYMQRTLQleeelkkANALRGQLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKL--------EALQKEKERL 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 593 IS---GLQEYLGTIK-GQATQAQnecrklrdeketLLQRLTEVEQERDQLEIVAmdAENMRKELAEleSALQEQHEVNAS 668
Cdd:pfam05622 231 IIerdTLRETNEELRcAQLQQAE------------LSQADALLSPSSDPGDNLA--AEIMPAEIRE--KLIRLQHENKML 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 669 LQQTQGDLSAYEAELEARLNlrdaEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 748
Cdd:pfam05622 295 RLGQEGSYRERLTELQQLLE----DANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLE 370
|
330 340
....*....|....*....|....
gi 2462622363 749 KLKHLQDDNNLLKQQLKDFQNHLN 772
Cdd:pfam05622 371 KLHEAQSELQKKKEQIEELEPKQD 394
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1298-1702 |
3.97e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1298 NEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQqkdfIDGNVESLM 1377
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEA----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1378 TELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREA-DRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1455
Cdd:COG4717 146 ERLEeLEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1456 ERRAQETAVNLVKADQQLR---------------SLQADAKDLEQHKIKQEEILKEINKIVAAkdsDFQCLSKKKEKLTE 1520
Cdd:COG4717 226 EEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLAL---LFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1521 ELQKLQKDIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQemavLDRQLGHKKEELhLLQGSMVQAKADLQ 1600
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE----LLREAEELEEEL-QLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1601 EALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISER--------KTQLTLIKQEIEKEEENLQVVLRQMSKHKTE 1672
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEELEELEEELEELREELAE 457
|
410 420 430
....*....|....*....|....*....|
gi 2462622363 1673 LKNILDMLQlENHELQGLKLQHDQRVSELE 1702
Cdd:COG4717 458 LEAELEQLE-EDGELAELLQELEELKAELR 486
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-672 |
4.17e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 243 HLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDK--------LNKSLKEEA 314
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDqlqklladLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 315 MLQKQ-------------SCEELKSDLNTKN-ELLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIDK 380
Cdd:pfam15921 395 LEKEQnkrlwdrdtgnsiTIDHLRRELDDRNmEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSLTAQLES 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 381 APDESPYIGKSRYKRNMF--ATESYIIDSAQAVQiKKMEPDEQLRNDHMNLRGHTPLDTQ----LEDKEKKISAAQT--- 451
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTleSSERTVSDLTASLQ-EKERAIEATNAEITKLRSRVDLKLQelqhLKNEGDHLRNVQTece 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 452 ----RLSELHDEIEKAEQQILRATEEFKQ--------LEEAIQLKKEALDLELQMEKQKQEIAGKQKEIKDLQIAIDSLD 519
Cdd:pfam15921 552 alklQMAEKDKVIEILRQQIENMTQLVGQhgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 520 SKDPK-----HSHMKAQKSGKEQQLDIMNK------------------------QYQQLESRLDEILSRIAKETEEIKDL 570
Cdd:pfam15921 632 LEKVKlvnagSERLRAVKDIKQERDQLLNEvktsrnelnslsedyevlkrnfrnKSEEMETTTNKLKMQLKSAQSELEQT 711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 571 EEQLTEGQIAANEALKKDL---------EGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERD----Q 637
Cdd:pfam15921 712 RNTLKSMEGSDGHAMKVAMgmqkqitakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNkmagE 791
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 2462622363 638 LEIVAMDAENMRKELAELESAL----------------QEQHEVNASLQQT 672
Cdd:pfam15921 792 LEVLRSQERRLKEKVANMEVALdkaslqfaecqdiiqrQEQESVRLKLQHT 842
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1290-1642 |
4.72e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1290 VPEHHNLENEVSRLEDIMQHLKSKKREERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTV---------- 1359
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleerhely 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1360 --------QKRQQQKDFIDGNVESLMTELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESEL-----S 1425
Cdd:PRK03918 365 eeakakkeELERLKKRLTGLTPEKLEKELEeLEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1426 CTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVKADQQLRSLQADAKDLEQHKiKQEEILKEINKIVAAKD 1505
Cdd:PRK03918 445 LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK-ELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1506 sdfqclSKKKEKLTEELQKLQKDIEMAERnEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLD-RQLGHKKEE 1584
Cdd:PRK03918 524 ------AEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKE 596
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 1585 LHLLQGSMVQAKA------DLQEALRLGETEVTEKCNHIREVKSLLEELSFQKGELNVQISERK 1642
Cdd:PRK03918 597 LEPFYNEYLELKDaekeleREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
431-662 |
4.88e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.98 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 431 GHTPLDTQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAiQLKKEALDlELQMEKQKqeIAGKQKEIKD 510
Cdd:COG0497 152 GLEELLEEYREAYRAWRALKKELEELRADEAERARELDLLRFQLEELEAA-ALQPGEEE-ELEEERRR--LSNAEKLREA 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 511 LQIAIDSLDSKDPkhshmkaqksGKEQQLdimnkqyQQLESRLDeilsRIAKETEEIKDLEEQLTEGQIAANEALKkDLE 590
Cdd:COG0497 228 LQEALEALSGGEG----------GALDLL-------GQALRALE----RLAEYDPSLAELAERLESALIELEEAAS-ELR 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 591 GVISGL----------QEYLGTIKGQAtqaqnecRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQ 660
Cdd:COG0497 286 RYLDSLefdperleevEERLALLRRLA-------RKYGVTVEELLAYAEELRAELAELENSDERLEELEAELAEAEAELL 358
|
..
gi 2462622363 661 EQ 662
Cdd:COG0497 359 EA 360
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
608-743 |
5.03e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 608 TQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARL 687
Cdd:PRK12705 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462622363 688 NLRDAEANQLKEELEKVTRLTQLEQ-----SALQAELEKERQALKNA-LGKAQFSEEKEQEN 743
Cdd:PRK12705 119 LELEELEKQLDNELYRVAGLTPEQArklllKLLDAELEEEKAQRVKKiEEEADLEAERKAQN 180
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1933-2136 |
5.25e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1933 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEErwcESLEKTLSQTKRQLSEREQQLvek 2012
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEI---DKLQAEIAEAEAEIEERREEL--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2013 sGELLALQKEADSMRADFSLLRN-----QFLTERKKAEKQVASLKEALKIQRSQLEKnlLMANQKDLERRQMEISDAMRT 2087
Cdd:COG3883 89 -GERARALYRSGGSVSYLDVLLGsesfsDFLDRLSALSKIADADADLLEELKADKAE--LEAKKAELEAKLAELEALKAE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462622363 2088 LKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENLP 2136
Cdd:COG3883 166 LEAA-KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
438-750 |
5.77e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALDLELQMEKQKQEIAGK-----------QK 506
Cdd:pfam05483 371 RLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKeqelifllqarEK 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 507 EIKDLQIAIDSLDSKDPKHShmkaqKSGKEQQLDIMNKQYQQLE--SRLDEILSRIAKETEEIKDLEEQLTEGQIAANEA 584
Cdd:pfam05483 451 EIHDLEIQLTAIKTSEEHYL-----KEVEDLKTELEKEKLKNIEltAHCDKLLLENKELTQEASDMTLELKKHQEDIINC 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 585 LKKD---------LEGVISGLQEYLGTIKGQATQAQNECR-KLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAE 654
Cdd:pfam05483 526 KKQEermlkqienLEEKEMNLRDELESVREEFIQKGDEVKcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEN 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 655 LESALQEQHEVNASLQQTQGDLSayeaeleARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 734
Cdd:pfam05483 606 KNKNIEELHQENKALKKKGSAEN-------KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVE 678
|
330
....*....|....*.
gi 2462622363 735 FSEEKEQENSELHAKL 750
Cdd:pfam05483 679 KAKAIADEAVKLQKEI 694
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
553-661 |
5.87e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 553 LDEILSRIAKET----EEIKDLEEQLTEGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRL 628
Cdd:COG0542 395 IDEAAARVRMEIdskpEELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELI 470
|
90 100 110
....*....|....*....|....*....|...
gi 2462622363 629 TEVEQERDQLEIVAMDAENMRKELAELESALQE 661
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAE 503
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
477-766 |
6.04e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 41.86 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 477 LEEAIQLKKEALDLElqmEKQKQEIAGKQKEIKdlQIAIDSLDSKDPKHSHMKAQKSgkeqQLDIMNKQYQQLESRLDEI 556
Cdd:pfam15818 164 VQEAIQLNKRLSALN---KKQESEICSLKKELK--KVTSDLIKSKVTCQYKMGEENI----NLTIKEQKFQELQERLNME 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 557 LSRIAKETEEIKDLEE-------------QLTEGQIAANEALKKDLEgvisGLQEylgtiKGQATQAQNECR--KLRDEK 621
Cdd:pfam15818 235 LELNKKINEEITHIQEekqdiiisfqhmqQLLQQQTQANTEMEAELK----ALKE-----NNQTLERDNELQreKVKENE 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 622 ETLLQRLTEVEQerdQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEEL 701
Cdd:pfam15818 306 EKFLNLQNEHEK---ALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEHYNKLCNQKKFEEDKKFQNVPEVNNENSEM 382
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 702 EKvtrlTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKD 766
Cdd:pfam15818 383 ST----EKSENLIIQKYNSEQEIREENTKSFCSDTEYRETEKKKGPPVEEIIIEDLQVLEKSFKN 443
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1550-1770 |
6.28e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1550 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEA---LRLGETEVTEKCNHIREVKSLLEE 1626
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALeqeLAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1627 LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGLKLQHDQRVSELEKTQV 1706
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462622363 1707 AVLEEKLELENLQQISQQQKGEIEwqkQLLERDKREIERMTAESRALQSCVECLSKEKEDLQEK 1770
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
525-639 |
6.56e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 40.27 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 525 HSHMKAQKSGKEQQLDiMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEgqiaaneaLKKDLEGVISGLQEyLGTIK 604
Cdd:pfam13851 22 RNNLELIKSLKEEIAE-LKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEE--------LRKQLENYEKDKQS-LKNLK 91
|
90 100 110
....*....|....*....|....*....|....*
gi 2462622363 605 GQATQAQNECRKLRDEKETLLQRLTEVEQERDQLE 639
Cdd:pfam13851 92 ARLKVLEKELKDLKWEHEVLEQRFEKVERERDELY 126
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
280-981 |
6.90e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 280 EKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQScEELKSDLNTKNELLKQKTIELTRACQKQYE---LEQEL 356
Cdd:TIGR00606 241 KSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQM-EKDNSELELKMEKVFQGTDEQLNDLYHNHQrtvREKER 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 357 AFYKIDAKFEPLNYYPSEYAEidKAPDESPYIGKSRYKRNMFATESYIIDSAQAVQIKKMEPDEQLRNDHMNLRGHTPLD 436
Cdd:TIGR00606 320 ELVDCQRELEKLNKERRLLNQ--EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHT 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 437 TQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKEALdlelqmEKQKQEIAGKQKEIKDLQIAID 516
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIL------EKKQEELKFVIKELQQLEGSSD 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 517 SLDSKDPKHSHM-----KAQKSGKEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDlEG 591
Cdd:TIGR00606 472 RILELDQELRKAerelsKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD-EQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 592 VISGLQEYLGTIKGQA------TQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEV 665
Cdd:TIGR00606 551 IRKIKSRHSDELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 666 NASLQQTQGDLSAYEAELEA----------------------------------RLNLRDAEANQLKEELEKVTRLTQLE 711
Cdd:TIGR00606 631 VCGSQDEESDLERLKEEIEKsskqramlagatavysqfitqltdenqsccpvcqRVFQTEAELQEFISDLQSKLRLAPDK 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 712 QSALQAELEKERQALKNALGKAQFSEE----KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLnhvvdGLVRPEEVAAR 787
Cdd:TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPGRQSiidlKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL-----GTIMPEEESAK 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 788 VdelrrkLKLGTGEMnihspsDVLGKSLADLQKQFSEILARSKWERDEAQVRE-RKLQEEMALQQEKLATGQEEFRQACE 866
Cdd:TIGR00606 786 V------CLTDVTIM------ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQvNQEKQEKQHELDTVVSKIELNRKLIQ 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 867 RALEARMNFDKRQHEARIQQMEneihyLQENLKSMEeiqgltdlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQVFG 946
Cdd:TIGR00606 854 DQQEQIQHLKSKTNELKSEKLQ-----IGTNLQRRQ--------QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920
|
730 740 750
....*....|....*....|....*....|....*
gi 2462622363 947 LDKELKKLKKAVATSDKLATAELTIAKDQLKSLHG 981
Cdd:TIGR00606 921 DQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1472-1690 |
7.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1472 QLRSLQADAKDLEQHKIKQEEILKEINKivaakdsdfqcLSKKKEKLTEELQKLQKDIEMAERNEDHHLQVLKESEVLLQ 1551
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAA-----------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1552 AKRAELEKLKSQVTSQQQEMA----VLDRQLGHKKEELHLLQGSMVQAKAD---LQEALRLGETEVTEKCNHIREVKSLL 1624
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAellrALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462622363 1625 EELSFQKGELNVQISERKTQLTlikqEIEKEEENLQVVLRQMSKHKTELKNILDMLQLENHELQGL 1690
Cdd:COG4942 167 AELEAERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-706 |
7.19e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 298 EEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAE 377
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 378 IDKAPDE---------------SPYIGKSRYKRNMFATESYiidSAQAVQIKKMEPDEQLRNDhmnlRGHTPLDTQLEDK 442
Cdd:COG5022 890 DVKSISSlklvnleleseiielKKSLSSDLIENLEFKTELI---ARLKKLLNNIDLEEGPSIE----YVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAIQLKKealdlelqmeKQKQEIAGKQKEIKDLQIAIDSL--DS 520
Cdd:COG5022 963 ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELS----------KQYGALQESTKQLKELPVEVAELqsAS 1032
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 521 KDPKHSHMKAQKSGKEQQLDIMN-KQYQQLESRLDEILSRiaKETEEIKDLEE---QLTEGQIAANEALKKDLEGVIS-G 595
Cdd:COG5022 1033 KIISSESTELSILKPLQKLKGLLlLENNQLQARYKALKLR--RENSLLDDKQLyqlESTENLLKTINVKDLEVTNRNLvK 1110
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 596 LQEYLGTIKGQATQAQNecrkLRDEKETLLQRLTEVEQERDQLEIVAMDAENMrKELAELESALQEQHEVNaslqqTQGD 675
Cdd:COG5022 1111 PANVLQFIVAQMIKLNL----LQEISKFLSQLVNTLEPVFQKLSVLQLELDGL-FWEANLEALPSPPPFAA-----LSEK 1180
|
410 420 430
....*....|....*....|....*....|.
gi 2462622363 676 LSAYEAELEARLNLRDAEANQLKEELEKVTR 706
Cdd:COG5022 1181 RLYQSALYDEKSKLSSSEVNDLKNELIALFS 1211
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1326-2125 |
7.31e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1326 QSEKEMEELHHNIDDLLQEKKSLE-CE--VEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHedivdeiecIEKT 1402
Cdd:TIGR01612 901 EINKSIEEEYQNINTLKKVDEYIKiCEntKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDK---------FDNT 971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1403 LLKRRSELREADRllaeaESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAVNLVkaDQQLRSLQADAKD 1482
Cdd:TIGR01612 972 LIDKINELDKAFK-----DASLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKATNDI--EQKIEDANKNIPN 1044
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1483 LEQ------HKIkQEEILKEINK--------IVAAKDSDFQCLSKKKEKL----------------TEELQKLQKDIEMA 1532
Cdd:TIGR01612 1045 IEIaihtsiYNI-IDEIEKEIGKniellnkeILEEAEINITNFNEIKEKLkhynfddfgkeenikyADEINKIKDDIKNL 1123
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1533 ERNEDHHLQVLKESEvllqaKRAE--LEKLKSQVTSQQQemaVLDRQLGHKK-EELHLLQGSMVqakadlqealrlgeTE 1609
Cdd:TIGR01612 1124 DQKIDHHIKALEEIK-----KKSEnyIDEIKAQINDLED---VADKAISNDDpEEIEKKIENIV--------------TK 1181
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1610 VTEKCNHIREVKSLLEELS-FQKGEL------NVQISERKTQLTLIKQEIEKEEENLQVVLRQMSKHKTELKNI------ 1676
Cdd:TIGR01612 1182 IDKKKNIYDEIKKLLNEIAeIEKDKTsleevkGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIkekspe 1261
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1677 ----LDMLQLENHELQGLKL-------------QHDQRVSELEKTQVAVLEEKLELENLQQISQQ-QKGEIEWQKQLLER 1738
Cdd:TIGR01612 1262 ieneMGIEMDIKAEMETFNIshdddkdhhiiskKHDENISDIREKSLKIIEDFSEESDINDIKKElQKNLLDAQKHNSDI 1341
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1739 DK--------------REIERMTAESRALQSCVEclsKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQS------- 1797
Cdd:TIGR01612 1342 NLylneianiynilklNKIKKIIDEVKEYTKEIE---ENNKNIKDELDKSEKLIKKIKDDINLEECKSKIESTlddkdid 1418
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1798 ----NLEKL-------ELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQ-----EKREAVNSLQEELANVQDHLNLAKQD 1861
Cdd:TIGR01612 1419 ecikKIKELknhilseESNIDTYFKNADENNENVLLLFKNIEMADNKSQhilkiKKDNATNDHDFNINELKEHIDKSKGC 1498
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1862 LLHTTKH-----QDVLLSEQTRlqKDISEWANRFEDCQ---KEEETKQQQLQVLqNEIEENKLKLVQQEMMFQRLQKERE 1933
Cdd:TIGR01612 1499 KDEADKNakaieKNKELFEQYK--KDVTELLNKYSALAiknKFAKTKKDSEIII-KEIKDAHKKFILEAEKSEQKIKEIK 1575
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1934 SEESKLETSKVtlkeQQHQLEKELTDQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTkrQLSEREQQLVEKS 2013
Cdd:TIGR01612 1576 KEKFRIEDDAA----KNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSF--SIDSQDTELKENG 1649
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2014 GELLALQKEADSMRAdfsllRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLMANQKDLERRQMEISDAMRTLKSEVK 2093
Cdd:TIGR01612 1650 DNLNSLQEFLESLKD-----QKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIKELIE 1724
|
890 900 910
....*....|....*....|....*....|..
gi 2462622363 2094 DEIRTSLKNLNQflpelpADLEAIlERNENLE 2125
Cdd:TIGR01612 1725 PTIENLISSFNT------NDLEGI-DPNEKLE 1749
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
569-768 |
7.42e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 569 DLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaenm 648
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 649 RKELAELESALQEQHEVNASLQ---------------QTQGDLSAYEAELEARLNLRDAEANQLKEELEKvtrlTQLEQS 713
Cdd:COG3883 85 REELGERARALYRSGGSVSYLDvllgsesfsdfldrlSALSKIADADADLLEELKADKAELEAKKAELEA----KLAELE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462622363 714 ALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 768
Cdd:COG3883 161 ALKAELEAAKAELEAQQ------AEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
652-903 |
7.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 652 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKeELEKVTRLTQLEQSALQAELEKERQALKnalg 731
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 732 kaqfseEKEQENSELHAKLKHLQDDnnlLKQQLKD-FQNHLNHVVDGLVRPEEVAARVDELRRklklgtgeMNIHSPSDv 810
Cdd:COG4942 87 ------ELEKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQY--------LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 811 lgKSLADLQKQFSEILARSKWERDEAQVRERKLQEEMALQQEKLATGQEEfrqacERALEARMNFDKRQHEARIQQMENE 890
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 2462622363 891 IHYLQENLKSMEE 903
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1760-1862 |
8.59e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 40.87 E-value: 8.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1760 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAMQQQLQEKR 1838
Cdd:TIGR04320 252 PPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALANAE 331
|
90 100
....*....|....*....|....
gi 2462622363 1839 EAVNSLQEELANVQDHLNLAKQDL 1862
Cdd:TIGR04320 332 ARLAKAKEALANLNADLAKKQAAL 355
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1812-2064 |
8.87e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1812 ELDQLNRDKlslhndISAMQQQLQEKREAVNSLQEELANVQDHLNlakqdllhttkhqdvllsEQTRLQKD-ISEWANRF 1890
Cdd:PHA02562 167 EMDKLNKDK------IRELNQQIQTLDMKIDHIQQQIKTYNKNIE------------------EQRKKNGEnIARKQNKY 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1891 EDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLET-SKV-----------TLKEQQHQLEKELT 1958
Cdd:PHA02562 223 DELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQfQKVikmyekggvcpTCTQQISEGPDRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1959 DQKSKLDQVLSKVLAAEERVRTLQEEERWCESLEKTLSQTKRQLSEREQQLVEKSGELLALQKEADSMRADFsllrnqfl 2038
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF-------- 374
|
250 260
....*....|....*....|....*.
gi 2462622363 2039 TERKKAEKQVASLKEALKIQRSQLEK 2064
Cdd:PHA02562 375 VDNAEELAKLQDELDKIVKTKSELVK 400
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
576-736 |
8.97e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.48 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 576 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLeivamdaeNMRKELAEL 655
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDL--------ARRRVLAPI 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 656 ESALQEQH-EVNASLQQTQGDLSAYEAELEARLNLRDAEANQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 734
Cdd:pfam00529 136 GGISRESLvTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRAP 215
|
..
gi 2462622363 735 FS 736
Cdd:pfam00529 216 VD 217
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1806-2214 |
9.12e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1806 VRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISE 1885
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1886 WA--NRFEDCQKEEETKQQQLQVLQNEIEENKLKLVQQEMMFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1963
Cdd:COG4717 128 LPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 1964 LDQvlskvlaAEERVRTLQEEerwCESLEKTLSQTKRQLseREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKK 2043
Cdd:COG4717 208 LAE-------LEEELEEAQEE---LEELEEELEQLENEL--EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2044 AEKQVASLKEALKIQRSQLEKNLLMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNEN 2123
Cdd:COG4717 276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 2124 LEGELESLKENLPFTMNEGPFEEKlNFSQVHIMDEHWRGEALREKLRHREDRLKAQLR-HCMSKQAEVLIKGKRQTEGTL 2202
Cdd:COG4717 356 AEELEEELQLEELEQEIAALLAEA-GVEDEEELRAALEQAEEYQELKEELEELEEQLEeLLGELEELLEALDEEELEEEL 434
|
410
....*....|..
gi 2462622363 2203 HSLRRQVDALGE 2214
Cdd:COG4717 435 EELEEELEELEE 446
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
462-597 |
9.30e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 462 KAEQQILRATEEFKQL-----EEAIQLKKEALdLELQME--KQKQEIagkQKEIKDlqiaidsldsKDPKHSHMKAQKSG 534
Cdd:PRK12704 28 IAEAKIKEAEEEAKRIleeakKEAEAIKKEAL-LEAKEEihKLRNEF---EKELRE----------RRNELQKLEKRLLQ 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462622363 535 KEQQLDIMNKQYQQLESRLDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKdlegvISGLQ 597
Cdd:PRK12704 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER-----ISGLT 151
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
434-795 |
9.92e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.97 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 434 PLDTQLEDKEK-----KISAAQTRLSELHDEIEKAEQQ---ILRATEEFKQLEEaiQLKKEALDLELQMEKQKQEIAGKQ 505
Cdd:PRK04778 83 DIEEQLFEAEElndkfRFRKAKHEINEIESLLDLIEEDieqILEELQELLESEE--KNREEVEQLKDLYRELRKSLLANR 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 506 KEIKDlqiAIDSLdskdpkhshmkaqksgkEQQLDIMNKQYQQLESRLDEilSRIAKETEEIKDLEEQLTegqiaaneAL 585
Cdd:PRK04778 161 FSFGP---ALDEL-----------------EKQLENLEEEFSQFVELTES--GDYVEAREILDQLEEELA--------AL 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 586 KKDLEGVISGLQEYLGTIKGQATQAQNECRKLRDEK-----ETLLQRLTEVEQERDQLE--IVAMDAENMRKELAELESA 658
Cdd:PRK04778 211 EQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGyhldhLDIEKEIQDLKEQIDENLalLEELDLDEAEEKNEEIQER 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462622363 659 LQE-----QHEVNA--SLQQTQGDLSAYEAELEarlnlrdAEANQLKEELEKVTRLTQLEQSAL--QAELEKERQAL-KN 728
Cdd:PRK04778 291 IDQlydilEREVKArkYVEKNSDTLPDFLEHAK-------EQNKELKEEIDRVKQSYTLNESELesVRQLEKQLESLeKQ 363
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462622363 729 ALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNhvvdGLVRPEEVA-ARVDELRRKL 795
Cdd:PRK04778 364 YDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ----GLRKDELEArEKLERYRNKL 427
|
|
| |
