|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-752 |
2.60e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 56 HNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEaglgRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQ 135
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 136 TSQQKWKEECRRFEHDLEERDNMIQNCNR---EYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQT 212
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 213 SELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFnsEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEF 292
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 293 KEVESAYEREKHNAQESFAKLNLLE-----KEYFSKNKKLNEDIEEQKKVIID-------------------LSKRLQY- 347
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLErlqenLEGFSEGVKALLKNQSGLSGILGvlselisvdegyeaaieaaLGGRLQAv 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 348 ---NEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDK-PPSFSVVLE-RLRRTL--TD 420
Cdd:TIGR02168 551 vveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfDPKLRKALSyLLGGVLvvDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 421 YQNKLEDASNELNSMNDV----------------KEKACNELDSTKQKIDSHTKNIK-------ELQDKLADVNKELSHL 477
Cdd:TIGR02168 631 LDNALELAKKLRPGYRIVtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEeleekiaELEKALAELRKELEEL 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 478 HTKCADREAL---ISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGM 554
Cdd:TIGR02168 711 EEELEQLRKEleeLSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 555 LDKFswSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTftkvaeqikaqescwHRQKKELELQ 634
Cdd:TIGR02168 791 IEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL---------------EEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 635 yselflevqkraqkfQEIAEKNMEKLN-HIEKSHEQLVlensHFKKLLSQTQREQMSLLAACALMAGALYPLYSRSCALS 713
Cdd:TIGR02168 854 ---------------IESLAAEIEELEeLIEELESELE----ALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 2462623267 714 TQRDFLQEQVNTFEL----FKLEIRTLAQALSTVEEKKQEEAK 752
Cdd:TIGR02168 915 RELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAE 957
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-474 |
2.65e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 2.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 62 SYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKw 141
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL- 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 142 KEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQR 221
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 222 EERLRKEFEATTLRVRKLEENIEAeraahleskfnseiiqlrirdLEGALQVEKASQAEAVADLEIIKNEFKEVESAyer 301
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIES---------------------LAAEIEELEELIEELESELEALLNERASLEEA--- 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 302 ekhnaqesfakLNLLEKEYFSKNKKLNEdieeqkkviidLSKRLQYNEKSCSELQEELVMAKKHQAFLvetcENnvkELE 381
Cdd:TIGR02168 889 -----------LALLRSELEELSEELRE-----------LESKRSELRRELEELREKLAQLELRLEGL----EV---RID 939
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 382 SILDSFTVSGQWTSGIHKDKDKPPSFSvvLERLRRTLTDYQNKLEDASN-ELNSMNDVKE----------------KACN 444
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEALENKIEDD--EEEARRRLKRLENKIKELGPvNLAAIEEYEElkerydfltaqkedltEAKE 1017
|
410 420 430
....*....|....*....|....*....|
gi 2462623267 445 ELDSTKQKIDSHTKNikELQDKLADVNKEL 474
Cdd:TIGR02168 1018 TLEEAIEEIDREARE--RFKDTFDQVNENF 1045
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
64-369 |
1.94e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 64 ESQIAKLRSEVEKgeALR-QSLEYDLAVARKE-AGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKW 141
Cdd:COG1196 199 ERQLEPLERQAEK--AERyRELKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 142 KEECRRFEH---DLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFS 218
Cdd:COG1196 277 EELELELEEaqaEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 219 TQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESA 298
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462623267 299 YEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFL 369
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
418-1210 |
7.01e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 7.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 418 LTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQN 497
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 498 VLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKltflhtlyqhlvagcvlikqpegmldkfswselcAVLQENVDALIAD 577
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKL----------------------------------EELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 578 LNRANEKIRHLEyickNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELElqyselflEVQKRAQKFQEIAEKNM 657
Cdd:TIGR02168 360 LEELEAELEELE----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE--------RLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 658 EKLNHIEKSHEQLVLENShfKKLLSQTQREQMSLLAacalmagalyplysrscALSTQRDFLQEQVNTFELFKLEIRTLA 737
Cdd:TIGR02168 428 KKLEEAELKELQAELEEL--EEELEELQEELERLEE-----------------ALEELREELEEAEQALDAAERELAQLQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 738 QALSTVEEKKQEEAKmkkktfkgliriFRKGVIAVLA-ANRLKILGQSCASLFTWMESFK--------EGIGMLVCTGEP 808
Cdd:TIGR02168 489 ARLDSLERLQENLEG------------FSEGVKALLKnQSGLSGILGVLSELISVDEGYEaaieaalgGRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 809 QDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGAAKNSFAKLMDKISLVME 885
Cdd:TIGR02168 557 AAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLGVAKDLVKFDPKLRKALS 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 886 ciPLHSSRSITyvekDSLVQ--RLAHGLHKVNTLALKYG--LRGHVPITKSTASLQKQILGFTQrlhaaevERRSLRLEV 961
Cdd:TIGR02168 620 --YLLGGVLVV----DDLDNalELAKKLRPGYRIVTLDGdlVRPGGVITGGSAKTNSSILERRR-------EIEELEEKI 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 962 TEFKRSVNEMKKELDKAQGLQMQL-NEFKQSKLITHE---KFESACEELNNALLREEQAQMLLNEQAQQLQELNYRLELH 1037
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELeEELEQLRKELEElsrQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1038 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENT 1117
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1118 LHKVRDQISLswSAASRNDFTLQLPKLHLETFAMEGLKGgpevvACQAMIKSFMDVYQLASTRIMTLEKEMTSHRSHIAA 1197
Cdd:TIGR02168 847 IEELSEDIES--LAAEIEELEELIEELESELEALLNERA-----SLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
810
....*....|...
gi 2462623267 1198 LKSELHTACLREN 1210
Cdd:TIGR02168 920 LREKLAQLELRLE 932
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
151-754 |
2.06e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 2.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 151 DLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRK--- 227
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElke 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 228 EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEgalqvekasqaEAVADLEiiknEFKEVESAYEREKHNAQ 307
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-----------EKVKELK----ELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 308 ESFAKLNLLEKEYFSKNKKLNEdIEEQKKVIIDLSKRLQYNEKSCSELQEEL-VMAKKHQAFlvETCENNVKELESILDS 386
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEING-IEERIKELEEKEERLEELKKKLKELEKRLeELEERHELY--EEAKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 387 FTVsgqwtsgihKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKI--------DSHTK 458
Cdd:PRK03918 381 LTG---------LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgreltEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 459 NI-KELQDKLADVNKELSHLhtkcADREALISTLKVELQNVLHCWE---KEKAQAAQSESELQKLSQAFHKDAEEKLTFL 534
Cdd:PRK03918 452 ELlEEYTAELKRIEKELKEI----EEKERKLRKELRELEKVLKKESeliKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 535 HTLYQHLVAgcvLIKQPEGMLDKFswselcavlqENVDALIADLNRANEKIRHLEyicKNKSDTMRELQQTQEDTFTKVA 614
Cdd:PRK03918 528 EKLKEKLIK---LKGEIKSLKKEL----------EKLEELKKKLAELEKKLDELE---EELAELLKELEELGFESVEELE 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 615 EQIKAQESCWhrqKKELELQYSELFLEV-QKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ-----REQ 688
Cdd:PRK03918 592 ERLKELEPFY---NEYLELKDAEKELEReEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeelrEEY 668
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462623267 689 MSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMK 754
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
132-363 |
8.08e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 8.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 132 KAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRR- 210
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANl 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 211 QTSELEFSTQREE----RLRKEFEATTLRVRK--LEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVAD 284
Cdd:TIGR02168 315 ERQLEELEAQLEEleskLDELAEELAELEEKLeeLKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 285 LEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKK-LNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAK 363
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-515 |
1.02e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 134 FQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEK----TLQEQDTAVQNMHKKVEKLETEHMDCSDLLR 209
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 210 RQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAVAdleiik 289
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIA------ 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 290 nefkevesAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEEL-VMAKKHQAF 368
Cdd:TIGR02169 312 --------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELeEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 369 LVETCENNVKelesildsftvsgqwtsgIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDS 448
Cdd:TIGR02169 384 RDELKDYREK------------------LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462623267 449 TKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELqnvlhcwEKEKAQAAQSESE 515
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL-------AEAEAQARASEER 505
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
24-364 |
1.27e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 24 QILKNETELDITDNLRKKLHWAKKEKLEITT---KHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRR 100
Cdd:TIGR04523 298 SDLNNQKEQDWNKELKSELKNQEKKLEEIQNqisQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKK 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 101 AAEERLAEAhriqEKLCAQNSELQAKTNETEKAFQTSQQKWKEecrrFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTL 180
Cdd:TIGR04523 378 ENQSYKQEI----KNLESQINDLESKIQNQEKLNQQKDEQIKK----LQQEKELLEKEIERLKETIIKNNSEIKDLTNQD 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 181 QEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIeaeraahleSKFNSEII 260
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV---------KDLTKKIS 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 261 QLRIRdlEGALQVEKASQAEAVADLE--IIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVI 338
Cdd:TIGR04523 521 SLKEK--IEKLESEKKEKESKISDLEdeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEK 598
|
330 340
....*....|....*....|....*.
gi 2462623267 339 IDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:TIGR04523 599 KDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-359 |
1.33e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 92 RKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAfqtsqQKWKEECRRFEHDLEERDnmIQNCNREYDLLMK 171
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLEPLERQAEKAERY-----RELKEELKELEAELLLLK--LRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 172 EKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHL 251
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 252 ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEiiknEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDI 331
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELA----EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260
....*....|....*....|....*...
gi 2462623267 332 EEQKKVIIDLSKRLQYNEKSCSELQEEL 359
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEAL 430
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
88-665 |
1.65e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 88 LAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKE--ECRRFEHDLEERDNMIQNCNRE 165
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEleKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 166 YDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdllRRQTSELEFSTQREERLRKEFEATTLRVRKLEeniea 245
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIE----- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 246 ERAAHLESKFNSeiIQLRIRDLEgalqvekasqaEAVADLEIIKNEFKEVESAYEREKHNA---QESFAKLNLLEKeyfS 322
Cdd:PRK03918 314 KRLSRLEEEING--IEERIKELE-----------EKEERLEELKKKLKELEKRLEELEERHelyEEAKAKKEELER---L 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 323 KNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLvetcENNVKELESILDSFTVSGQWTSGIHKdKD 402
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHR-KE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 403 KPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKA---------CNELDSTKQKIDSH--------TKNIKELQD 465
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklkelAEQLKELEEKLKKYnleelekkAEEYEKLKE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 466 KLADVNKELSHLHTKCADREALISTLKvELQNVLHCWEKEKAQAaqsESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGC 545
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEELKKKLA-ELEKKLDELEEELAEL---LKELEELGFESVEELEERLKELEPFYNEYLELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 546 VLIKQPEGMLDKFswselcAVLQENVDALIADLNRANEKIRHLEyicknksDTMRELQQT-QEDTFTKVAEQIKAQESCW 624
Cdd:PRK03918 609 DAEKELEREEKEL------KKLEEELDKAFEELAETEKRLEELR-------KELEELEKKySEEEYEELREEYLELSREL 675
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2462623267 625 HRQKKELElQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEK 665
Cdd:PRK03918 676 AGLRAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
27-516 |
2.08e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 2.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 27 KNETELDITDNLRKKLHWAKKEKLEITTKHNAELASYESQiaKLRSEVEKGEALRQSLEYdlavARKEAGLGRRAAEERL 106
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK--KKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKK 1458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 107 AEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQ-----KWKEECRRFEHDLEERDNMIQ-NCNREYDLLMK--EKSRLEK 178
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKaeeakKKADEAKKAAEAKKKADEAKKaEEAKKADEAKKaeEAKKADE 1538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 179 TLQEQDTAVQNMHKKVEKL-ETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKL----------------EE 241
Cdd:PTZ00121 1539 AKKAEEKKKADELKKAEELkKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLyeeekkmkaeeakkaeEA 1618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 242 NIEAE--RAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEK- 318
Cdd:PTZ00121 1619 KIKAEelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEa 1698
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 319 EYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQ-EELVMAKKHQAFLVETCENN-----VKELESILDSFTVSGQ 392
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKKKAEEAKKDEEEKKkiahlKKEEEKKAEEIRKEKE 1778
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 393 WTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNK 472
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNN 1858
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2462623267 473 ELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESEL 516
Cdd:PTZ00121 1859 ENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
88-358 |
5.15e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.36 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 88 LAVARKEAGLGRRAAEERLaeaHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYD 167
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKF---EKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 168 LLMKE--KSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLEEN 242
Cdd:pfam17380 352 RIRQEerKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 243 IEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEA---VADLEIIKNEFKEVESAYEREKHNAQESFA-KLNLLEK 318
Cdd:pfam17380 432 ARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEE 511
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462623267 319 EyfSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 358
Cdd:pfam17380 512 E--RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
29-531 |
5.29e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 29 ETELDITDNLRKKLHWAKKEKLEITTKHN---AELASYESQIAKLRSEVEKGEALRQSLEyDLAVARKEAGLGRRAAEER 105
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINeisSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 106 LAEAHRIQEKLCAQNSELQAKTNETEK---------AFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRL 176
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 177 EKTLQEQdtavQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESK-- 254
Cdd:PRK03918 341 EELKKKL----KELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIge 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 255 FNSEIIQLR--IRDLEGA------------------------LQVEKASQ--AEAVADLEIIKNEFKEVESAYEREKH-- 304
Cdd:PRK03918 417 LKKEIKELKkaIEELKKAkgkcpvcgrelteehrkelleeytAELKRIEKelKEIEEKERKLRKELRELEKVLKKESEli 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 305 ----------NAQESFAKLNL--LEKEY--FSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFL- 369
Cdd:PRK03918 497 klkelaeqlkELEEKLKKYNLeeLEKKAeeYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELl 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 370 ----------VETCENNVKELESILDSFTvsgqwtsgihKDKDKPPSfsvvLERLRRTLTDYQNKLEDASNELNSMNDVK 439
Cdd:PRK03918 577 keleelgfesVEELEERLKELEPFYNEYL----------ELKDAEKE----LEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 440 EKACNELDSTKQKIDShtKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHcwEKEKAQAAQSESELQKL 519
Cdd:PRK03918 643 EELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE--ELEEREKAKKELEKLEK 718
|
570
....*....|..
gi 2462623267 520 SQAFHKDAEEKL 531
Cdd:PRK03918 719 ALERVEELREKV 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-465 |
5.56e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 5.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 160 QNCNREYDLLmKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCS-DLLRRQTSELEFSTQREERLRKEFEATTLRVRK 238
Cdd:TIGR02168 186 ENLDRLEDIL-NELERQLKSLERQAEKAERYKELKAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 239 LEENIEAERAAHLEskfnseiIQLRIRDLEGALQVEKASQAEAVADLEIIK-------NEFKEVESAYEREKHNAQESFA 311
Cdd:TIGR02168 265 LEEKLEELRLEVSE-------LEEEIEELQKELYALANEISRLEQQKQILRerlanleRQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 312 KLNLLEKEYFSKNKK---LNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFT 388
Cdd:TIGR02168 338 ELAELEEKLEELKEElesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462623267 389 VSGQWTSGIHKDKDKPPSFSVV--LERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQD 465
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
20-521 |
6.78e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 20 LDVKQILKNETELditdnlrKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKE----- 94
Cdd:TIGR04523 114 NDKEQKNKLEVEL-------NKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklniq 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 95 -----AGLGRRAAEERLAEAHRIQEK---LCAQNSELQAKTNETEKAFQTSQQKWKEEcrrfEHDLEERDNMIQNCNREY 166
Cdd:TIGR04523 187 knidkIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEK----TTEISNTQTQLNQLKDEQ 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 167 DLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDC-----SDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEE 241
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnqkeQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 242 NIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYF 321
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 322 SKNK---KLNEDIEEQKKVIIDL-----SKRLQYN--EKSCSELQEELVMAKKHQAFLVETCENNVKEL---ESILDSFT 388
Cdd:TIGR04523 423 LLEKeieRLKETIIKNNSEIKDLtnqdsVKELIIKnlDNTRESLETQLKVLSRSINKIKQNLEQKQKELkskEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 389 VSGQWTSGIHKD-KDKPPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKAC---------NELDSTKQKIDSHTK 458
Cdd:TIGR04523 503 EEKKELEEKVKDlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENlekeideknKEIEELKQTQKSLKK 582
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462623267 459 NIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQ 521
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-473 |
1.22e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 23 KQILKNETELDITDNLRKKLHWAKK----EKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLG 98
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKadeaKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 99 RRAAEERLAEAHRIQEKLcaqnselqAKTNETEKAfqtsQQKWKEECRRfEHDLEERDNMIQNCNREYDLLMKEKSRLEK 178
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEEL--------KKAEEKKKA----EEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 179 TLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEfSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSE 258
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE-EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 259 iiqlrirdlegalqvEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQEsfakLNLLEKEYFSKNKKLNEDIEEQKKVI 338
Cdd:PTZ00121 1686 ---------------DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE----LKKAEEENKIKAEEAKKEAEEDKKKA 1746
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 339 IDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELEsildsftvSGQWTSGIHKDKDKPPSFSVVLERLRRTL 418
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED--------EKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2462623267 419 TDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKE 473
Cdd:PTZ00121 1819 LVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
59-469 |
4.12e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 4.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 59 ELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHR---IQEKLCAQNSELQAKTNETEKAFQ 135
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 136 ---TSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQT 212
Cdd:PRK02224 332 ecrVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 213 SELEFSTQREERLRKEFEATTLRVRKLEENIEaERAAHLESKFNSEIIQlrirDLEGALQVEKASQ-----AEAVADLEI 287
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVE-EAEALLEAGKCPECGQ----PVEGSPHVETIEEdrervEELEAELED 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 288 IKNEFKEVESAYEREKhNAQESFAKLNLLEKeyfsKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEEL-----VMA 362
Cdd:PRK02224 487 LEEEVEEVEERLERAE-DLVEAEDRIERLEE----RREDLEELIAERRETIEEKRERAEELRERAAELEAEAeekreAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 363 KKHQAflVETCENNVKELESILDSFTVSgqwtsgihkdkdkppsfsvvLERLRRtLTDYQNKLEDASNELNSMNDvKEKA 442
Cdd:PRK02224 562 EAEEE--AEEAREEVAELNSKLAELKER--------------------IESLER-IRTLLAAIADAEDEIERLRE-KREA 617
|
410 420
....*....|....*....|....*...
gi 2462623267 443 CNEL-DSTKQKIDSHTKNIKELQDKLAD 469
Cdd:PRK02224 618 LAELnDERRERLAEKRERKRELEAEFDE 645
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-286 |
4.72e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 54 TKHNAELASYESQIAKLRSEVEKGEALRQSLE---YDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNET 130
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEerlEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 131 EKAFQTSQQKWKEECRRFEHDLEERDNmiqncnreydlLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRR 210
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLE-----------ALRAAAELAAQLEELEEAEEALLERLERLEEE-------LEE 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462623267 211 QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQvEKASQAEAVADLE 286
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAE 500
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
227-509 |
4.75e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 227 KEFEATTLRvRKLEENIEAER---AAHLESkFNSEIIQLRIRDLEGALQ--------VEKASQAEAVADLEIIKNEFKEV 295
Cdd:PRK05771 7 KKVLIVTLK-SYKDEVLEALHelgVVHIED-LKEELSNERLRKLRSLLTklsealdkLRSYLPKLNPLREEKKKVSVKSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 296 ESAyerekhnAQESFAKLNLLEKEYFSKNKKLNEdIEEQKKVIIDLSKRLQYNEKSCSELQEELvmAKKH-QAFLVETCE 374
Cdd:PRK05771 85 EEL-------IKDVEEELEKIEKEIKELEEEISE-LENEIKELEQEIERLEPWGNFDLDLSLLL--GFKYvSVFVGTVPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 375 NNVKELESILDSFTVsgqwtSGIHKDKDKPPSFSVVLerlrrtltdyQNKLEDASNELNSmNDVKEKACNELDSTKQKID 454
Cdd:PRK05771 155 DKLEELKLESDVENV-----EYISTDKGYVYVVVVVL----------KELSDEVEEELKK-LGFERLELEEEGTPSELIR 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2462623267 455 SHTKNIKELQDKLADVNKELSHLHTKCADreaLISTLKVELQNvlhcwEKEKAQA 509
Cdd:PRK05771 219 EIKEELEEIEKERESLLEELKELAKKYLE---ELLALYEYLEI-----ELERAEA 265
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-358 |
9.55e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 9.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 149 EHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKE 228
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE-------LAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 229 FEATTLRVRKLEENIE-AERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAvADLEIIKNEFKEVESAYEREKhnaq 307
Cdd:COG4942 99 LEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAALRAELEAER---- 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2462623267 308 esfAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEE 358
Cdd:COG4942 174 ---AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
934-1105 |
1.00e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 934 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGlqmQLNEFKQSKLITHEKFESACEELNNALLRE 1013
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA---EEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1014 EQAQM----LLNEQA---QQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRL 1086
Cdd:COG1196 319 EELEEelaeLEEELEeleEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170
....*....|....*....
gi 2462623267 1087 EENIHDAESALRMAAKDKE 1105
Cdd:COG1196 399 AAQLEELEEAEEALLERLE 417
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
66-586 |
1.69e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 66 QIAKLRSEVEKGEALRQSLEyDLAVARKE-AGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQqkwkEE 144
Cdd:COG4913 250 QIELLEPIRELAERYAAARE-RLAELEYLrAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR----EE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 145 CRRFEHDLEERD-NMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMH------------------KKVEKLETEHMDCS 205
Cdd:COG4913 325 LDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGlplpasaeefaalraeaaALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 206 DLLRRQTSELEFSTQREERLRKEFEAttLRVRKLeeNIEAeraahleskfnsEIIQLRiRDLEGALQVeKASQAEAVADL 285
Cdd:COG4913 405 EALAEAEAALRDLRRELRELEAEIAS--LERRKS--NIPA------------RLLALR-DALAEALGL-DEAELPFVGEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 286 EIIKNEFKEVESAYEREKHNaqesfAKLNLL-EKEYFSK-------NK--------KLNEDIEEQKKVIID---LSKRLQ 346
Cdd:COG4913 467 IEVRPEEERWRGAIERVLGG-----FALTLLvPPEHYAAalrwvnrLHlrgrlvyeRVRTGLPDPERPRLDpdsLAGKLD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 347 YNEKSCSE-LQEELvmakkHQAFLVETCEnNVKELESILDSFTVSGQ----WTSGIHKDKDKPPSFSVV----------- 410
Cdd:COG4913 542 FKPHPFRAwLEAEL-----GRRFDYVCVD-SPEELRRHPRAITRAGQvkgnGTRHEKDDRRRIRSRYVLgfdnraklaal 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 411 ---LERLRRTLTDYQNKLEDASNELNSMNDVKE--KACNELDSTKQKIDSHTKNIKELQDKLADV---NKELSHLHTKCA 482
Cdd:COG4913 616 eaeLAELEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLdasSDDLAALEEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 483 DREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKfswse 562
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN----- 770
|
570 580
....*....|....*....|....
gi 2462623267 563 lcavLQENVDALIADLNRANEKIR 586
Cdd:COG4913 771 ----LEERIDALRARLNRAEEELE 790
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
47-688 |
2.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 47 KEKLEITTkhnAELASYESQIAKLRSEVEKGEALRQSLEYDL-AVARKEAGLGRRAAEERLAEAHRIQE--KLCAQNSEL 123
Cdd:TIGR02169 293 KEKIGELE---AEIASLERSIAEKERELEDAEERLAKLEAEIdKLLAEIEELEREIEEERKRRDKLTEEyaELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 124 QAKTNETEKAFQTSQQKWKEECRRfehdleerdnmIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMD 203
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREK-----------LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 204 CSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAeraahLESKFNSeiIQLRIRDLEGALQVEKASQAEAVA 283
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR-----VEKELSK--LQRELAEAEAQARASEERVRGGRA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 284 DLEIIKNEFKEVES------AYEREKHNAQESFA--KLN--LLEKEYFSKnkklnEDIEEQKKVIIDLSKRLQYNEKSCS 353
Cdd:TIGR02169 512 VEEVLKASIQGVHGtvaqlgSVGERYATAIEVAAgnRLNnvVVEDDAVAK-----EAIELLKRRKAGRATFLPLNKMRDE 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 354 ELQEELVMAKKHQAFLVETCE-------------------NNVKELESILDSFTV----------SGQWTSGihkdKDKP 404
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAVDLVEfdpkyepafkyvfgdtlvvEDIEAARRLMGKYRMvtlegelfekSGAMTGG----SRAP 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 405 PSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR 484
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 485 EALISTLKVELQNVlhcwekeKAQAAQSESELQKLSQAFHKDAEEkltflhtlyqhlvagcvlIKQPEGMLDKFSWSElc 564
Cdd:TIGR02169 743 EEDLSSLEQEIENV-------KSELKELEARIEELEEDLHKLEEA------------------LNDLEARLSHSRIPE-- 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 565 avLQENVDALIADLNRANEKIRHLEYICKNKSdtmRELQQTQEDTFTKVAEQIKAQEscwhrQKKELELQYSELflevQK 644
Cdd:TIGR02169 796 --IQAELSKLEEEVSRIEARLREIEQKLNRLT---LEKEYLEKEIQELQEQRIDLKE-----QIKSIEKEIENL----NG 861
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2462623267 645 RAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQREQ 688
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
70-691 |
3.99e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 70 LRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFE 149
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 150 HDLEERDNMIQNCNREY-------DLLMKEKSRLEKTLQEqdtAVQNMHKKVEKLETEHMDCSDLLRRQTSelefSTQRE 222
Cdd:pfam15921 342 DKIEELEKQLVLANSELtearterDQFSQESGNLDDQLQK---LLADLHKREKELSLEKEQNKRLWDRDTG----NSITI 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 223 ERLRKEFEATTLRVRKLEENIEAERAahleskfnseiiqlrirDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYERE 302
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKS-----------------ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEML 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 303 KHNAQESFAKLNLLekeyfsknkklnediEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCEnNVKELES 382
Cdd:pfam15921 478 RKVVEELTAKKMTL---------------ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 383 ILDSFTVSGQWTSGIHKDKDKppsfsvVLERLRRTLTDYQNKLEDASNELNSMNDVK---EKACN----ELDSTKQKIDS 455
Cdd:pfam15921 542 HLRNVQTECEALKLQMAEKDK------VIEILRQQIENMTQLVGQHGRTAGAMQVEKaqlEKEINdrrlELQEFKILKDK 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 456 HTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLH 535
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 536 TLYQHLVAGCVLIKQPEGMLDKFSWSELCAV-----LQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQedtf 610
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEK---- 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 611 TKVAEQIKAQESCWHRQKKELELqyselfLEVQKRAQKfqeiaeknmEKLNHIEKSHEQLVLENSHFKKLLSQTQREQMS 690
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEV------LRSQERRLK---------EKVANMEVALDKASLQFAECQDIIQRQEQESVR 836
|
.
gi 2462623267 691 L 691
Cdd:pfam15921 837 L 837
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3-364 |
5.39e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 3 LNTSSNTGDTQRLKIASLDVK-QILKNETELDITDNLRKKLHWAKK-EKLEITTKHNAELASYESQIAKLRSEVEKGEAL 80
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDfDAKEDNRADEATEEAFGKAEEAKKtETGKAEEARKAEEAKKKAEDARKAEEARKAEDA 1139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 81 RQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKlcAQNSELQAKTNETEKAFQTSQqkwKEECRRFEHDLE-ERDNMI 159
Cdd:PTZ00121 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAED--AKKAEAARKAEEVRKAEELRK---AEDARKAEAARKaEEERKA 1214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 160 QNCNR-EYDLLMKEKSRLEKTLQEQDTAvqnmhKKVEKLETEhmdcSDLLRRQTSELEFSTQREERLRKEFEATTLRVRK 238
Cdd:PTZ00121 1215 EEARKaEDAKKAEAVKKAEEAKKDAEEA-----KKAEEERNN----EEIRKFEEARMAHFARRQAAIKAEEARKADELKK 1285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 239 LEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEK--------ASQAEAVADLEIIKNEFKEVESAYEREKHNAQESF 310
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKkaeeakkkADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2462623267 311 AKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
413-1097 |
5.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 5.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 413 RLRRTLTDYQnKLEDASNELnsmndvkEKACNELDSTKQKidshTKNIKELQDKLADVNKELSHLHTKCADREalISTLK 492
Cdd:TIGR02168 180 KLERTRENLD-RLEDILNEL-------ERQLKSLERQAEK----AERYKELKAELRELELALLVLRLEELREE--LEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 493 VELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVD 572
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 573 ALIADLNRANEKIRHLEyickNKSDTMRE---LQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKF 649
Cdd:TIGR02168 313 NLERQLEELEAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 650 QEI---AEKNMEKLNHIEKSHEQLvleNSHFKKLLSQTQREQMSLLAAcalmagALYPLYSRSCALSTQRDFLQEQVNTF 726
Cdd:TIGR02168 389 AQLelqIASLNNEIERLEARLERL---EDRRERLQQEIEELLKKLEEA------ELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 727 ELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFR------KGVIAVLA-ANRLKILGQSCASLFTWMESFK--- 796
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGYEaai 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 797 -----EGIGMLVCTGEPQDKhkfpkhqkeqlrclQALSWLTSSDLLAAiisSMAELQDVIGKADPNSR---ICGHLLIGA 868
Cdd:TIGR02168 540 eaalgGRLQAVVVENLNAAK--------------KAIAFLKQNELGRV---TFLPLDSIKGTEIQGNDreiLKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 869 AKNSFAKLMDKISLVMEciPLHSSRSITyvekDSLVQ--RLAHGLHKVNTLALKYG---------LRGHVPITKSTASLQ 937
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALS--YLLGGVLVV----DDLDNalELAKKLRPGYRIVTLDGdlvrpggviTGGSAKTNSSILERR 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 938 KQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLRE 1013
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1014 EQAQMLLNEQAQQLQELNYRLELHSSEEADKNQ----------TLGEAVKSLSEAKMELRRKDQSLRQ-----------L 1072
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAqieqlkeelkALREALDELRAELTLLNEEAANLRErleslerriaaT 836
|
730 740
....*....|....*....|....*
gi 2462623267 1073 NRHLTQLEQDKRRLEENIHDAESAL 1097
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
36-521 |
5.98e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 36 DNLRKKLHWAKKEKLE----ITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAglgrraaeERLAEAHR 111
Cdd:pfam05483 207 ENARLEMHFKLKEDHEkiqhLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKA--------NQLEEKTK 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 112 IQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSR-----------LEKTL 180
Cdd:pfam05483 279 LQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKakaahsfvvteFEATT 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 181 QEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELE----FSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFN 256
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEemtkFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 257 SEIIQL------RIRDLEGALQVEKASQaeavadlEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfskNKKLned 330
Cdd:pfam05483 439 QELIFLlqarekEIHDLEIQLTAIKTSE-------EHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE----NKEL--- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 331 IEEQKKVIIDLSKRlQYNEKSCSELQEELVmakKHQAFLVETCENNVKELESILDSFTVSGQWTSgIHKDKDKPPSFSVV 410
Cdd:pfam05483 505 TQEASDMTLELKKH-QEDIINCKKQEERML---KQIENLEEKEMNLRDELESVREEFIQKGDEVK-CKLDKSEENARSIE 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 411 LERLRRtltdyqnkledasnelNSMNDVKEKACNELdstKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALIST 490
Cdd:pfam05483 580 YEVLKK----------------EKQMKILENKCNNL---KKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
490 500 510
....*....|....*....|....*....|.
gi 2462623267 491 LKVELQNVLHCWEkEKAQAAQSESELQKLSQ 521
Cdd:pfam05483 641 LELELASAKQKFE-EIIDNYQKEIEDKKISE 670
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
46-304 |
6.11e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 6.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 46 KKEKLEittkhnAELASYESQIAKLRSEVEKGEALRQsleydlAVARKEAGLGRR-AAEERLAEAHRIQEKLCAQNSELQ 124
Cdd:PRK02224 476 RVEELE------AELEDLEEEVEEVEERLERAEDLVE------AEDRIERLEERReDLEELIAERRETIEEKRERAEELR 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 125 AKTNETEkafqTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKtLQEQDTAVQNMHKKVEKLETEhmdc 204
Cdd:PRK02224 544 ERAAELE----AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREK---- 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 205 sdllRRQTSELEfsTQREERLRKEFEattlRVRKLEENIEAERAAHLESKfnSEIIQLRIRDLEGALQVEKASQAEAVAD 284
Cdd:PRK02224 615 ----REALAELN--DERRERLAEKRE----RKRELEAEFDEARIEEARED--KERAEEYLEQVEEKLDELREERDDLQAE 682
|
250 260
....*....|....*....|
gi 2462623267 285 LEIIKNEFKEVESAYEREKH 304
Cdd:PRK02224 683 IGAVENELEELEELRERREA 702
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
958-1203 |
1.42e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 958 RLE--VTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKL-ITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYRL 1034
Cdd:TIGR02168 190 RLEdiLNELERQLKSLERQAEKAERYKELKAELRELELaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1035 ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDkecvanhmrav 1114
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE----------- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1115 entLHKVRDQISLswSAASRNDFTLQLPKLHLETFAMEGLKGGPEvvacqamiksfmDVYQLASTRIMTLEKEMTSHRSH 1194
Cdd:TIGR02168 339 ---LAELEEKLEE--LKEELESLEAELEELEAELEELESRLEELE------------EQLETLRSKVAQLELQIASLNNE 401
|
....*....
gi 2462623267 1195 IAALKSELH 1203
Cdd:TIGR02168 402 IERLEARLE 410
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
58-263 |
2.08e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 58 AELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGR---RAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAF 134
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArriRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 135 QT------------------SQQKWKEECRR---FEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKK 193
Cdd:COG4942 107 AEllralyrlgrqpplalllSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 194 VEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLR 263
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
58-285 |
2.17e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 58 AELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEaglgRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTS 137
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEE----LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 138 QQkwkeECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdLLRRQTSELEF 217
Cdd:COG1196 392 LR----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE------EAELEEEEEAL 461
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462623267 218 STQREERLRKEfeattlrvRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADL 285
Cdd:COG1196 462 LELLAELLEEA--------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
5-473 |
2.18e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 5 TSSNTGDTQRLKIASLDVKQILKNETELDITDnLRKKLhwakKEKLEITTKHNAELASYESQIAKLrsevekgealrqsl 84
Cdd:TIGR01612 1291 IISKKHDENISDIREKSLKIIEDFSEESDIND-IKKEL----QKNLLDAQKHNSDINLYLNEIANI-------------- 1351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 85 eYDLavarkeagLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWK-EECR-RFEHDLEERD--NMIQ 160
Cdd:TIGR01612 1352 -YNI--------LKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINlEECKsKIESTLDDKDidECIK 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 161 NCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQ----TSELEFSTQReerLRKEFEATTLRV 236
Cdd:TIGR01612 1423 KIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKkdnaTNDHDFNINE---LKEHIDKSKGCK 1499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 237 RKLEENIEA-ERAAHLESKFNSEIIQLRIRDLEGALqveKASQAEAVADLEIIKNEFKEVESAYEREkhnAQESFAKLNL 315
Cdd:TIGR01612 1500 DEADKNAKAiEKNKELFEQYKKDVTELLNKYSALAI---KNKFAKTKKDSEIIIKEIKDAHKKFILE---AEKSEQKIKE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 316 LEKEYF------SKNKKLNedieeqkKVIIDLSKRLQYNEKSCSELQEelvMAKKHQAFLVETcennvKELESILDSFTV 389
Cdd:TIGR01612 1574 IKKEKFrieddaAKNDKSN-------KAAIDIQLSLENFENKFLKISD---IKKKINDCLKET-----ESIEKKISSFSI 1638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 390 SGQWTSgIHKDKDKPPSFSVVLERLRrtltDYQNKLEDASNELNSMNdvkekacNELDSTKQKIDSHTKN----IKELQD 465
Cdd:TIGR01612 1639 DSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELD-------SEIEKIEIDVDQHKKNyeigIIEKIK 1706
|
....*...
gi 2462623267 466 KLADVNKE 473
Cdd:TIGR01612 1707 EIAIANKE 1714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
970-1140 |
2.25e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 970 EMKKELD--KAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYRLELHSSEEADKNQT 1047
Cdd:COG1196 217 ELKEELKelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1048 LGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKV---RDQ 1124
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaeLAE 376
|
170
....*....|....*.
gi 2462623267 1125 ISLSWSAASRNDFTLQ 1140
Cdd:COG1196 377 AEEELEELAEELLEAL 392
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
138-687 |
2.63e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 138 QQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETehmdcsdllrrQTSELEF 217
Cdd:TIGR04523 140 IDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL-----------LLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 218 STQREERLRKEFEATTLRVRKLEENIEAEraahlESKFNSeiIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVES 297
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKK-----QQEINE--KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 298 AYEREKHNAQESFAKLNLLEKEYFSK-NKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHqaflVETCENN 376
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE----LTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 377 VKELESILDsftvsgQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDAS-------NELNSMNDVKEKACNELDST 449
Cdd:TIGR04523 358 NSEKQRELE------EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEklnqqkdEQIKKLQQEKELLEKEIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 450 KQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAfHKDAEE 529
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE-KKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 530 KLTFLhtlyqhlvagcvlikqpegmldkfswSELCAVLQENVDALIADLNRANEKIRHLE-YICKNKSDTMRELQQTQED 608
Cdd:TIGR04523 511 KVKDL--------------------------TKKISSLKEKIEKLESEKKEKESKISDLEdELNKDDFELKKENLEKEID 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 609 TFTKVAEQIK-AQESCW--HRQKKELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQ 685
Cdd:TIGR04523 565 EKNKEIEELKqTQKSLKkkQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
..
gi 2462623267 686 RE 687
Cdd:TIGR04523 645 QE 646
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
946-1105 |
3.93e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 946 RLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQ----GLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLN 1021
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEaelaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1022 EQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAA 1101
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
....
gi 2462623267 1102 KDKE 1105
Cdd:COG1196 386 EELL 389
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
404-622 |
4.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 404 PPSFSVVLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCAD 483
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 484 REALISTLKVELQNVLhcwekEKAQAAQSESELQ-KLSQAFHKDAEEKLTFLHTLYQHLVAgcvLIKQPEGMLDKFswSE 562
Cdd:COG4942 95 LRAELEAQKEELAELL-----RALYRLGRQPPLAlLLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAEL--AA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 563 LCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQEDTFTKVAEQIKAQES 622
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
414-690 |
6.44e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 414 LRRTLTDYQNKLEDASNELNSMNDVK-------EKACNELDSTKQKIDShTKNIKElqDKLADVNKELSHLHTKCADREA 486
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRrresqsqEDLRNQLQNTVHELEA-AKCLKE--DMLEDSNTQIEQLRKMMLSHEG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 487 LIStlkvELQNVLHCWEKEKAQAAQSESELQKLS-QAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCA 565
Cdd:pfam15921 185 VLQ----EIRSILVDFEEASGKKIYEHDSMSTMHfRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 566 VLQENVDALIADLNRANEKIRHLeyicKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKR 645
Cdd:pfam15921 261 LLQQHQDRIEQLISEHEVEITGL----TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREA 336
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2462623267 646 AQKFQEiaeknmeklnHIEKSHEQLVLENSHFKKllSQTQREQMS 690
Cdd:pfam15921 337 KRMYED----------KIEELEKQLVLANSELTE--ARTERDQFS 369
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
36-502 |
7.46e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 36 DNLRKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSL-EYDLAVARKEAGLGRRAAEERLAEAHRIQE 114
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELeELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 115 KLCAQNSELQAKTNETEKAFQTSQQKWKEEcRRFEHDLEERDNMIQNCNREYDLLMKEKS-RLEKTLQEQDTAVQNMHKK 193
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 194 VEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKF-NSEIIQLRIRDLEGALQ 272
Cdd:COG4717 208 LAELEEE-------LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLgLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 273 VekASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLE--KEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEK 350
Cdd:COG4717 281 L--VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 351 SCSELQEELVMAKKHQAFLvetcENNVKELESILDSFTVSGQWtsgihkdkdkppsfsvvlERLRRTLTDYQNKLEDASN 430
Cdd:COG4717 359 LEEELQLEELEQEIAALLA----EAGVEDEEELRAALEQAEEY------------------QELKEELEELEEQLEELLG 416
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462623267 431 ELNSMNDV--KEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHT--KCADREALISTLKVELQNVLHCW 502
Cdd:COG4717 417 ELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRELAEEW 492
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
934-1090 |
1.16e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 934 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEkfesaceelnnallrE 1013
Cdd:COG1579 34 AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE---------------I 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462623267 1014 EQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELrrkDQSLRQLNRHLTQLEQDKRRLEENI 1090
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKI 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
940-1105 |
1.28e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 940 ILGFT--QRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLnefkqsklithekfeSACEELNNALLREEQAQ 1017
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1018 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESAL 1097
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 2462623267 1098 RMAAKDKE 1105
Cdd:COG4913 737 EAAEDLAR 744
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
931-1097 |
1.37e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 931 KSTASLQKQILGFTQRLhaaeverRSLRLEVTEFKRSVNEMKKE----LDKAQgLQMQLNEfkqskliTHEKFESACEEL 1006
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETREtlstLSLRQ-LESRLAQ-------TLDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1007 N--NALL-----REEQAQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSL 1069
Cdd:PRK11281 145 AeyNSQLvslqtQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDL 224
|
170 180
....*....|....*....|....*...
gi 2462623267 1070 RQLNRHLTQLEQDkrRLEENIHDAESAL 1097
Cdd:PRK11281 225 LQKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
227-518 |
2.21e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 42.32 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 227 KEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLE------------GALQVEKASQAEAVADLEIIKNEFKE 294
Cdd:pfam05701 70 EELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLRVEEMEqgiadeasvaakAQLEVAKARHAAAVAELKSVKEELES 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 295 VESAY-----ERE--KHNAQESFAKLNLLEKEYFSKNKKLNE-------------DIEEQK--------KVIIDLSKRLQ 346
Cdd:pfam05701 150 LRKEYaslvsERDiaIKRAEEAVSASKEIEKTVEELTIELIAtkeslesahaahlEAEEHRigaalareQDKLNWEKELK 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 347 YNEKSCSELQEELVMAKKHQAFLvETCENNVKELESILDSFTVS--GQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNK 424
Cdd:pfam05701 230 QAEEELQRLNQQLLSAKDLKSKL-ETASALLLDLKAELAAYMESklKEEADGEGNEKKTSTSIQAALASAKKELEEVKAN 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 425 LEDASNELNSMNDV---------KEKAcnELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVEL 495
Cdd:pfam05701 309 IEKAKDEVNCLRVAaaslrseleKEKA--ELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQL 386
|
330 340
....*....|....*....|...
gi 2462623267 496 QNVLHCWEKEKAQAAQSESELQK 518
Cdd:pfam05701 387 QQAAQEAEEAKSLAQAAREELRK 409
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
929-1102 |
2.27e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 929 ITKSTASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQG-LQMQLNEFKQSKLITHEKFESACEELN 1007
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEeLAELLRALYRLGRQPPLALLLSPEDFL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1008 ---------NALLREEQAQML-LNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKME----LRRKDQSLRQLN 1073
Cdd:COG4942 133 davrrlqylKYLAPARREQAEeLRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELA 212
|
170 180
....*....|....*....|....*....
gi 2462623267 1074 RHLTQLEQDKRRLEENIHDAESALRMAAK 1102
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
173-658 |
2.62e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 173 KSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENI--------- 243
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLrnqlqntvh 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 244 EAERAAHLESKF----NSEIIQLRIRDL--EGALQ--------VEKASQA-------------------------EAVAD 284
Cdd:pfam15921 153 ELEAAKCLKEDMledsNTQIEQLRKMMLshEGVLQeirsilvdFEEASGKkiyehdsmstmhfrslgsaiskilrELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 285 LEIIKNEFKEVESAYEREKHNAQEsfaKLNLLEKEYFSKNKKLnedIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQN---KIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 365 HQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLErlRRTLTDYQNKLEDASNELNSMNDVKEKACN 444
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA--NSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 445 ELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR-------EALISTLKVELQNVLhcwEKEKAQAAQSESELQ 517
Cdd:pfam15921 385 DLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnmevqrlEALLKAMKSECQGQM---ERQMAAIQGKNESLE 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 518 KLSqAFHKDAEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCAVLQENVDALIAD-------LNRANEKIRHLEY 590
Cdd:pfam15921 462 KVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTASLQEKERAIEATnaeitklRSRVDLKLQELQH 535
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462623267 591 IcKNKSDTMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELEL--QYSELFLEVQ-KRAQKFQEIAEKNME 658
Cdd:pfam15921 536 L-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgQHGRTAGAMQvEKAQLEKEINDRRLE 605
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
67-726 |
2.93e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 67 IAKLRSEVEKGEALRQSLEYDLAvarKEAGLGRRAAEERLAEAHRIQEKlcaqnselQAKTNETEKAFQTSQQKWKEECR 146
Cdd:pfam12128 236 IMKIRPEFTKLQQEFNTLESAEL---RLSHLHFGYKSDETLIASRQEER--------QETSAELNQLLRTLDDQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 147 RFEHDLEERDNMIQNCNREYDLLMK-----EKSRLEKTLQEQDTA------VQNMHKKVEKLETEHMDCSDLLRRQTSel 215
Cdd:pfam12128 305 ELNGELSAADAAVAKDRSELEALEDqhgafLDADIETAAADQEQLpswqseLENLEERLKALTGKHQDVTAKYNRRRS-- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 216 efstQREERLRKEFEATTLRVRKLEENIEAERAA------HLESKFNSEIIQLRIRDLEGALQVE-KASQAEAVADLEII 288
Cdd:pfam12128 383 ----KIKEQNNRDIAGIKDKLAKIREARDRQLAVaeddlqALESELREQLEAGKLEFNEEEYRLKsRLGELKLRLNQATA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 289 KNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMA------ 362
Cdd:pfam12128 459 TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQagtllh 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 363 ---------KKHQAFLVETCENNVKELESILDSFTVSGQWTSG---IHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASN 430
Cdd:pfam12128 539 flrkeapdwEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYgvkLDLKRIDVPEWAASEEELRERLDKAEEALQSARE 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 431 ELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLhcwekeKAQAA 510
Cdd:pfam12128 619 KQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL------EAQLK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 511 QSESELQKLSQAFHKDAEEKLTFLHTLYQHLV----AGCVLIKQPEGMLDKFSWSELCAVLQENVDAL---------IAD 577
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgaldAQLALLKAAIAARRSGAKAELKALETWYKRDLaslgvdpdvIAK 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 578 LNRANEK-IRHLEYICKNKSDtMRELQQTQEDTFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKN 656
Cdd:pfam12128 773 LKREIRTlERKIERIAVRRQE-VLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKAS 851
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 657 MEKLNHIEKSHEQLVLENSHFKKLLSQTQREQMSLLAACALMAGAlyplysrscALSTQRDFLQEQVNTF 726
Cdd:pfam12128 852 EKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLE---------DLKLKRDYLSESVKKY 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-531 |
3.26e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 206 DLLRRQTSELEfstQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADL 285
Cdd:COG1196 242 EELEAELEELE---AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 286 EIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEyfsknkklnedIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKH 365
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEE-----------LEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 366 QAFLVETCENNVKElesildsftvsgqwtsgihkdkdkppsfsvvLERLRRTLTDYQNKLEDASNELNSMNDVKEKACNE 445
Cdd:COG1196 388 LLEALRAAAELAAQ-------------------------------LEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 446 LDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQnvlhcwekEKAQAAQSESELQKLSQAFHK 525
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA--------EAAARLLLLLEAEADYEGFLE 508
|
....*.
gi 2462623267 526 DAEEKL 531
Cdd:COG1196 509 GVKAAL 514
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
180-364 |
3.80e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 180 LQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAhLESKfnSEI 259
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAE-------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE-IEER--REE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 260 IQLRIRDL------EGALQV--------EKASQAEAV-----ADLEIIkNEFKEVESAYEREKHNAQESFAKLNLLEKEY 320
Cdd:COG3883 88 LGERARALyrsggsVSYLDVllgsesfsDFLDRLSALskiadADADLL-EELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462623267 321 FSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKK 364
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
59-266 |
3.84e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 59 ELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAglgrRAAEERLAEAHRIQEKLcaqNSELQAKTNETEKafqtsq 138
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARL----EAAKTELEDLEKEIKRL---ELEIEEVEARIKK------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 139 qkwkeecrrfehdLEERDNMIQNcNREYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFS 218
Cdd:COG1579 78 -------------YEEQLGNVRN-NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEE-------LAELEAELAEL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462623267 219 TQREERLRKEFEATTLRVRKLEENIEAERAAhLESKFNSEIIQL--RIRD 266
Cdd:COG1579 137 EAELEEKKAELDEELAELEAELEELEAEREE-LAAKIPPELLALyeRIRK 185
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
411-484 |
3.97e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.97e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462623267 411 LERLRRTLTDYQNKLEDASNELNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCADR 484
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
269-522 |
4.07e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 269 GALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYfsknKKLNEDIEEQKKVIIDLSKRLQYN 348
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY----NELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 349 EKSCSELQEELvmakKHQAFLVETCENNVKELESILDSftvsgqwtsgihkdkdkpPSFSVVLERL--RRTLTDYQNKLe 426
Cdd:COG3883 78 EAEIEERREEL----GERARALYRSGGSVSYLDVLLGS------------------ESFSDFLDRLsaLSKIADADADL- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 427 dasneLNSMNDVKEKACNELDSTKQKIDSHTKNIKELQDKLADVNKELshlhtkcADREALISTLKVELQNVLHCWEKEK 506
Cdd:COG3883 135 -----LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ-------AEQEALLAQLSAEEAAAEAQLAELE 202
|
250
....*....|....*.
gi 2462623267 507 AQAAQSESELQKLSQA 522
Cdd:COG3883 203 AELAAAEAAAAAAAAA 218
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
170-344 |
4.73e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 170 MKEKSRLEKTLQEQDTAVQNMHKKVEKLETEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAa 249
Cdd:COG1579 2 MPEDLRALLDLQELDSELDRLEHRLKELPAE-------LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 250 hLESKFNSEIIQLR-IRDLEgALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQEsfaKLNLLEKEYFSKNKKLN 328
Cdd:COG1579 74 -RIKKYEEQLGNVRnNKEYE-ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEA---ELAELEAELEEKKAELD 148
|
170
....*....|....*.
gi 2462623267 329 EDIEEQKKVIIDLSKR 344
Cdd:COG1579 149 EELAELEAELEELEAE 164
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
944-1094 |
4.78e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 944 TQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHE--KFESACEELNNALLREEQAQMLLN 1021
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElaELPERLEELEERLEELRELEEELE 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462623267 1022 EQAQQLQELNYRL-ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAE 1094
Cdd:COG4717 167 ELEAELAELQEELeELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
950-1126 |
5.99e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 950 AEVERRSLRLEvtEFKRSVNEMKKELDKAQGLqmqLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQE 1029
Cdd:TIGR02169 674 AELQRLRERLE--GLKRELSSLQSELRRIENR---LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1030 LNYRLELHSSEEADKNQTLGEAVKSLSEAKMEL-----RRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDK 1104
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
170 180
....*....|....*....|..
gi 2462623267 1105 ECVANHMRAVENTLHKVRDQIS 1126
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIK 850
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
164-313 |
6.14e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 164 REYDLLMKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSEL-EFSTQRE-ERLRKEFEATTLRVRKLEE 241
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgNVRNNKEyEALQKEIESLKRRISDLED 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462623267 242 NIEAeraahleskfnseiIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKL 313
Cdd:COG1579 111 EILE--------------LMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
23-501 |
6.63e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 23 KQILKNETELDItdnLRKKLHWAKKEKL-EITTKHNAELASYESQIAKLRSEVEKGEALRQSLeydlavARKEAGLGRRA 101
Cdd:TIGR00606 279 KQMEKDNSELEL---KMEKVFQGTDEQLnDLYHNHQRTVREKERELVDCQRELEKLNKERRLL------NQEKTELLVEQ 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 102 AEERLaEAHRIQEKLCAQNSELQAKTNETE------KAFQTSQQKWKEECRRfEHDLEERDNMIQNCNREYDLLMKEKSR 175
Cdd:TIGR00606 350 GRLQL-QADRHQEHIRARDSLIQSLATRLEldgferGPFSERQIKNFHTLVI-ERQEDEAKTAAQLCADLQSKERLKQEQ 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 176 LEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLlRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAE-RAAHLESK 254
Cdd:TIGR00606 428 ADEIRDEKKGLGRTIELKKEILEKKQEELKFV-IKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTEtLKKEVKSL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 255 FNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKnefKEVESAYER-EKHNAQES---------FAKLNLLEKEYFSKN 324
Cdd:TIGR00606 507 QNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT---KDKMDKDEQiRKIKSRHSdeltsllgyFPNKKQLEDWLHSKS 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 325 KKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETC---------ENNVKELE-SILDSFTVSGQ-- 392
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCgsqdeesdlERLKEEIEkSSKQRAMLAGAta 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 393 -WTSGIHKDKDKPPSFSVVLERLRRT-------LTDYQNKLEDASNELNSMNDVKEKACNELDST-------KQKIDSHT 457
Cdd:TIGR00606 664 vYSQFITQLTDENQSCCPVCQRVFQTeaelqefISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSIIDLKE 743
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2462623267 458 KNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHC 501
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
934-1126 |
7.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 934 ASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGlQMQLNEFKQSKLITHEkfesacEELNNAL--L 1011
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ-ELAALEAELAELEKEI------AELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 1012 REEQAQMLLneQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAkmelrRKDQsLRQLNRHLTQLEQDKRRLEENIH 1091
Cdd:COG4942 103 KEELAELLR--ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA-----RREQ-AEELRADLAELAALRAELEAERA 174
|
170 180 190
....*....|....*....|....*....|....*
gi 2462623267 1092 DAESALRMAAKDKECVANHMRAVENTLHKVRDQIS 1126
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELA 209
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
114-336 |
7.95e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 114 EKLcaqNSELQAKTNETEKAFQTS-QQKWKEECRRFEHDLEERDNMIQNCNREYD-----------------LLMKEKSR 175
Cdd:PTZ00108 1105 EKL---NAELEKKEKELEKLKNTTpKDMWLEDLDKFEEALEEQEEVEEKEIAKEQrlksktkgkasklrkpkLKKKEKKK 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 176 LEKTLQEQDTAVQNMHKK-VEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEaeraahLESK 254
Cdd:PTZ00108 1182 KKSSADKSKKASVVGNSKrVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSS------KSSE 1255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 255 FNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQ 334
Cdd:PTZ00108 1256 DNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKK 1335
|
..
gi 2462623267 335 KK 336
Cdd:PTZ00108 1336 KS 1337
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
23-526 |
8.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 8.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 23 KQILKNETELDITDNLRKKL-HWAKKEKLEI----TTKHNAELASYESQIAKLRSEVEKGEALRQSLEydlaVARKEAGL 97
Cdd:COG4913 262 ERYAAARERLAELEYLRAALrLWFAQRRLELleaeLEELRAELARLEAELERLEARLDALREELDELE----AQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 98 GR--------RAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEEcrrfehdLEERDNMIQNCNREYDLL 169
Cdd:COG4913 338 DRleqlereiERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL-------LEALEEELEALEEALAEA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 170 MKEKSRLEKTLQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQT----SELEFS------TQREERLRKEFE------ATT 233
Cdd:COG4913 411 EAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALgldeAELPFVgelievRPEEERWRGAIErvlggfALT 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 234 LRVrklEENIEAERAAHLESKFNSEIIQ-LRIRDLEGALQVEKASQAEAVADLEIIKNEFKE--------------VESA 298
Cdd:COG4913 491 LLV---PPEHYAAALRWVNRLHLRGRLVyERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwleaelgrrfdyvcVDSP 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 299 -------------------YEREKHNAQESF-----------AKLNLLEKEYfsknKKLNEDIEEQKKVIIDLSKRLQYN 348
Cdd:COG4913 568 eelrrhpraitragqvkgnGTRHEKDDRRRIrsryvlgfdnrAKLAALEAEL----AELEEELAEAEERLEALEAELDAL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 349 EKSCSELQ--EELVMAKKHQAFLVETCENNVKELESILDSftvsgqwtsgihkdkdkppsfSVVLERLRRTLTDYQNKLE 426
Cdd:COG4913 644 QERREALQrlAEYSWDEIDVASAEREIAELEAELERLDAS---------------------SDDLAALEEQLEELEAELE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462623267 427 DASNELNSMNDvkekacnELDSTKQKIDSHTKNIKELQDKLADVNKELSHLHTKCAD-------REALISTLKVELQNVL 499
Cdd:COG4913 703 ELEEELDELKG-------EIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfaaalGDAVERELRENLEERI 775
|
570 580
....*....|....*....|....*..
gi 2462623267 500 hcwEKEKAQAAQSESELQKLSQAFHKD 526
Cdd:COG4913 776 ---DALRARLNRAEEELERAMRAFNRE 799
|
|
| |
