|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
132-944 |
7.34e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 7.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 132 KNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAI-ERRNEYN-LRKLDEEYKERIA 209
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVsELEEEIEeLQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 210 ALKNELRKEREQiLQQAGKQRLELEQEIEKAKTEenyiRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENV 289
Cdd:TIGR02168 299 RLEQQKQILRER-LANLERQLEELEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 290 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEh 369
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIER----LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 370 glgseecnpLNMSIEAELVIEQMKEQHHRDICCLRLELeDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQ--I 447
Cdd:TIGR02168 449 ---------LEELQEELERLEEALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsgL 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 448 SDLKNEIAEL--------QGQAAVLKEAHHEATCRHEEEKKQLQVKLEEE---KTHLQEkLRLQHEMELKARLTQAQASF 516
Cdd:TIGR02168 519 SGILGVLSELisvdegyeAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNelgRVTFLP-LDSIKGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 517 EREREGLQSSAWTEEKVRGLTQELEQfhqeqlTSLVEKHTLEKEELRKELLEKH-------QRELQEGRYESEKLQQENS 589
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLG------GVLVVDDLDNALELAKKLRPGYrivtldgDLVRPGGVITGGSAKTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 590 IL--RNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQ 667
Cdd:TIGR02168 672 ILerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 668 NQEKLQELNQRLTEMLCQKEKEpgNSALEEREQEKFNLKEELERCKVQSSTL---VSSLEAELSEVKIQTHIVQQENHLL 744
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEA--EEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 745 KDELEKMKQLhrcpdLSDFQQKIssvlsynEKLLKEKEALSEELNSCVDKLAKsslLEHRIATMKQEQKSWEHQSASLKS 824
Cdd:TIGR02168 830 ERRIAATERR-----LEDLEEQI-------EELSEDIESLAAEIEELEELIEE---LESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 825 QLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLqNAGGKSWAPEIATHPSGLHNQQKRLSwD 904
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIEDDEEEAR-R 972
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 2462540516 905 KLDHLMNEEQQL----------LWQENERLQTMvQNTKAELTHSREKVRQ 944
Cdd:TIGR02168 973 RLKRLENKIKELgpvnlaaieeYEELKERYDFL-TAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
449-1160 |
1.40e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 449 DLKNEIAELQGQAAVLK-EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLrLQHEmELKARLTQAQASFEREREGLQSSA 527
Cdd:TIGR02168 217 ELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELE-EKLE-ELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 528 wteEKVRGLTQELeQFHQEQLTSLVEKhtlekEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNL 607
Cdd:TIGR02168 295 ---NEISRLEQQK-QILRERLANLERQ-----LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 608 KLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQkE 687
Cdd:TIGR02168 366 ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE-E 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 688 KEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQ--QENHLLKDELEKMKQLHRcPDLSDFQQ 765
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQ-SGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 766 KISSVLSYNEKLLKEKE-ALSEELNSCVD------KLAKSSLLEHRI--ATMKQEQKSWEHQSASLKSQLVASQEKVQ-- 834
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEaALGGRLQAVVVenlnaaKKAIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKNIEGFLgv 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 835 --NLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQ-LQNAGGKSWAPEIATHPSGLHNQQKRLSWDKldhlmn 911
Cdd:TIGR02168 604 akDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYrIVTLDGDLVRPGGVITGGSAKTNSSILERRR------ 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 912 eEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKV 991
Cdd:TIGR02168 678 -EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 992 S----QMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTATPSPSPHAWDLQLL------QQQACPMVPREQFLQ 1061
Cdd:TIGR02168 757 TeleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLneeaanLRERLESLERRIAAT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 1062 LQRQLLQAERI--NQHLQEELENRTSETNTPQGNQEQLVTVMEERMIEVEQKLKLVKRLLQEKVNQLKEQLCKNTKADAM 1139
Cdd:TIGR02168 837 ERRLEDLEEQIeeLSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
730 740
....*....|....*....|.
gi 2462540516 1140 VKDLYVENAQLLKALEVTEQR 1160
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVR 937
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
138-875 |
4.93e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 4.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 138 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRK 217
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 218 EREQILqqagKQRLELEQEIEKAKTEENYIRDRLA--------LSLKENSRLENELLENAEKLAEYENLTNKLQRNLEnV 289
Cdd:TIGR02169 238 QKEAIE----RQLASLEEELEKLTEEISELEKRLEeieqlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-E 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 290 LAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLknspsEEVEANSGGIEPEH 369
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-----EEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 370 --------GLGsEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQ------- 434
Cdd:TIGR02169 388 kdyrekleKLK-REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQlaadlsk 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 435 ------RHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ--VKLEEEKTHLQEKLRLQHEMELK 506
Cdd:TIGR02169 467 yeqelyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvHGTVAQLGSVGERYATAIEVAAG 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 507 ARLTQ---------------------AQASF----EREREGLQSSAWTEEKVRGLTQELEQFHQE---------QLTSLV 552
Cdd:TIGR02169 547 NRLNNvvveddavakeaiellkrrkaGRATFlplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyvfGDTLVV 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 553 EKHTLEKEELRK--------ELLEKHQreLQEGRYESEKLQQENSilrneiTTLNEEDSISNLKLGTLNGSQEEMWQKTE 624
Cdd:TIGR02169 627 EDIEAARRLMGKyrmvtlegELFEKSG--AMTGGSRAPRGGILFS------RSEPAELQRLRERLEGLKRELSSLQSELR 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 625 TVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFN 704
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV--KSELKELEARIEELEEDLHK 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 705 LKEELErckvqsstlvsSLEAELSEVKIQThivqqenhlLKDELEKMKQLHrcpdlSDFQQKISSVLSYNEKLLKEKEAL 784
Cdd:TIGR02169 777 LEEALN-----------DLEARLSHSRIPE---------IQAELSKLEEEV-----SRIEARLREIEQKLNRLTLEKEYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 785 SEELNscvDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEAL 864
Cdd:TIGR02169 832 EKEIQ---ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
810
....*....|.
gi 2462540516 865 KQEVMSLHKQL 875
Cdd:TIGR02169 909 EAQIEKKRKRL 919
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
122-647 |
1.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 122 LALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 199
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 200 LDEEYKERIAALKnELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLT 279
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 280 NKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQ-----------------------VDELQSEL 336
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeeleealaeleeeeeeeeealeeAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 337 EEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEK 416
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 417 QLDETVVSCkkAQENMKQRHENETHTLEKQISDLKNEIA-------------ELQGQAAVLKEAHHEATCRHEEEKKQLQ 483
Cdd:COG1196 535 AYEAALEAA--LAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldkiraRAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 484 VKLEEEKTHLQEKLRLQH--EMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQ-EQLTSLVEKHTLEKE 560
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAArlEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEaEAELEELAERLAEEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 561 ELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENL 640
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*..
gi 2462540516 641 KKQISEL 647
Cdd:COG1196 773 EREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
268-882 |
3.66e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.75 E-value: 3.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 268 NAEKLAEYENLTNKLQRNLENVLAEKFGDLDPS----SAEFFLQEERLTQMRNEYERQCRVL----QDQVDELQSElEEY 339
Cdd:pfam15921 200 SGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisylKGRIFPVEDQLEALKSESQNKIELLlqqhQDRIEQLISE-HEV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 340 RAQGRVLRLPLKNSPSEEVEANSGGIEPEhglgSEECNPLNMSIEAELviEQMKEQHHRDICCLRLELEDKVRHYEKQL- 418
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQ----ARNQNSMYMRQLSDL--ESTVSQLRSELREAKRMYEDKIEELEKQLv 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 419 --DETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAEL-----QGQAAVLKEAHHEATCRHeeekkqLQVKLEEEKT 491
Cdd:pfam15921 353 laNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELslekeQNKRLWDRDTGNSITIDH------LRRELDDRNM 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 492 HLQeklrlQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQfHQEQLTSLVEKHTLEKEELRKE------ 565
Cdd:pfam15921 427 EVQ-----RLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLES-TKEMLRKVVEELTAKKMTLESSertvsd 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 566 ---LLEKHQRELQEGRYESEKLQQENSILRNEITTL-NEEDSISN---------LKLGTLNGSQEEMWQKTETVKQ---- 628
Cdd:pfam15921 501 ltaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLkNEGDHLRNvqtecealkLQMAEKDKVIEILRQQIENMTQlvgq 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 629 ----------ENAAVQKMVENLKKQISELKI--------------KNQQLDLENTELSQKNSQNQEKLQELNQRLTEML- 683
Cdd:pfam15921 581 hgrtagamqvEKAQLEKEINDRRLELQEFKIlkdkkdakireleaRVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLn 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 684 -CQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQ----ENHLLKDELEKMKQL-HRC 757
Cdd:pfam15921 661 eVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsDGHAMKVAMGMQKQItAKR 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 758 PDLSDFQQKISSVLSYNEKLLKEKEALSEELNScvdklaksslLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLE 837
Cdd:pfam15921 741 GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNK----------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 2462540516 838 DTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKS 882
Cdd:pfam15921 811 VALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTS 855
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
182-946 |
3.78e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 182 VDDHHAAIERrneyNLRKLDEEYK--ERIAALKNELRKEREQIL----QQAGKQRLELEQEIEKAKTEENYIRDRLALSL 255
Cdd:TIGR02168 191 LEDILNELER----QLKSLERQAEkaERYKELKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 256 KENSRLENELLENAEKLAEYE---NLTNKLQRNLEN---VLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQV 329
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQkelYALANEISRLEQqkqILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 330 DELQSELEEYRAQgrvlrlpLKNSPSEEVEANSGGIEPEHGLGSEEcnplnmsiEAELVIEQMKEQHHRDICCLRLELED 409
Cdd:TIGR02168 347 EELKEELESLEAE-------LEELEAELEELESRLEELEEQLETLR--------SKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 410 KVRHYEKQLDETvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEE 489
Cdd:TIGR02168 412 LEDRRERLQQEI-------EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 490 KTHLQEKLRLQHEMELKARLTQAQASFERERE---GLQSSAWTEEKVR-GLTQELEQFHQEQLTSLVEK---------HT 556
Cdd:TIGR02168 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSglsGILGVLSELISVDeGYEAAIEAALGGRLQAVVVEnlnaakkaiAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 557 LEKEELRK----ELLEKHQRELQEGRYESEKLQQE-------------------NSILRNEITTLNEEDSISNLKL---- 609
Cdd:TIGR02168 565 LKQNELGRvtflPLDSIKGTEIQGNDREILKNIEGflgvakdlvkfdpklrkalSYLLGGVLVVDDLDNALELAKKlrpg 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 610 --------------GTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQEL 675
Cdd:TIGR02168 645 yrivtldgdlvrpgGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 676 NQRLTEMLCQKEKEPGNSalEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLH 755
Cdd:TIGR02168 725 SRQISALRKDLARLEAEV--EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 756 RcpDLSDFQQKISSVlsyNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQN 835
Cdd:TIGR02168 803 E--ALDELRAELTLL---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 836 LEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKswAPEIATHPSGLHNQQKRLswdkLDHLMNEEQQ 915
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK--LAQLELRLEGLEVRIDNL----QERLSEEYSL 951
|
810 820 830
....*....|....*....|....*....|.
gi 2462540516 916 LLwqenERLQTMVQNTKAELTHSREKVRQLE 946
Cdd:TIGR02168 952 TL----EEAEALENKIEDDEEEARRRLKRLE 978
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
138-719 |
4.89e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 4.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 138 AALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRnEYNLRKLDEEYKERIAALKnelrk 217
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI-EAKINELEEEKEDKALEIK----- 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 218 EREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLA------ 291
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGtvaqlg 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 292 ---EKFG------------------DLDPSSAEFFLQEER--------LTQMRN---------------------EYERQ 321
Cdd:TIGR02169 532 svgERYAtaievaagnrlnnvvvedDAVAKEAIELLKRRKagratflpLNKMRDerrdlsilsedgvigfavdlvEFDPK 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 322 CR-----VLQDQVdeLQSELEEYRAQGRVLRL-PLKNSPSEEVEANSGGIEPEHGLGSeecNPLNMSIEAELVIEQMKEQ 395
Cdd:TIGR02169 612 YEpafkyVFGDTL--VVEDIEAARRLMGKYRMvTLEGELFEKSGAMTGGSRAPRGGIL---FSRSEPAELQRLRERLEGL 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 396 HHrdiccLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRhENETHTLEKQISDLKNEIAELQGQAAVLKEAhheatcrh 475
Cdd:TIGR02169 687 KR-----ELSSLQSELRRIENRLDELSQELSDASRKIGEI-EKEIEQLEQEEEKLKERLEELEEDLSSLEQE-------- 752
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 476 EEEKKQLQVKLEEEKTHLQEKLRlqhemELKARLTQAQASFEREReglqssawtEEKVRGLTQELEQFHQEQLTSLVE-K 554
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLH-----KLEEALNDLEARLSHSR---------IPEIQAELSKLEEEVSRIEARLREiE 818
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 555 HTLEKEELRKELLEKhqrelqegryESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQ 634
Cdd:TIGR02169 819 QKLNRLTLEKEYLEK----------EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 635 KMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM---LCQKEKEPGNSALEEReqekfnLKEELER 711
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIedpKGEDEEIPEEELSLED------VQAELQR 962
|
....*...
gi 2462540516 712 CKVQSSTL 719
Cdd:TIGR02169 963 VEEEIRAL 970
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
385-679 |
2.48e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 385 AELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDEtvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVL 464
Cdd:COG1196 212 AERYRELKEELKELEAELLLLKLRELEAELEELEAE-----LEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 465 KEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEM-ELKARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQf 543
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELaELEEELEELEEELEELEEELEE---AEEELEEAEAELAE- 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 544 hQEQLTSLVEKHTLEKEELRKELLEKHQRELQegryESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKT 623
Cdd:COG1196 363 -AEEALLEAEAELAEAEEELEELAEELLEALR----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462540516 624 ETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRL 679
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
426-848 |
1.12e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 426 KKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK---EAHHEATCRHEEEKKQlQVKLEEEKTHLQEKLRLQHE 502
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKkkiQKNKSLESQISELKKQ-NNQLKDNIEKKQQEINEKTT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 503 M--ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKEL---LEKHQRELQEG 577
Cdd:TIGR04523 247 EisNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELkseLKNQEKKLEEI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 578 RYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLE 657
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 658 NTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGN-SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHI 736
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 737 VQQENHLLKDELEKMKQLHRCPD--LSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLA------KSSLLEHRIATM 808
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNkddfelKKENLEKEIDEK 566
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2462540516 809 KQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMS 848
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
151-713 |
1.64e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 151 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRKEREQI--- 222
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAELael 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 223 ---LQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQR---NLENVLAEKFGD 296
Cdd:COG1196 266 eaeLEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEeleELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 297 LDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNspSEEVEANSGGIEPEHGLGSEEC 376
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ--LEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 377 NPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHEnETHTLEKQISDLKNEIAE 456
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE-ELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 457 LQGQAAVLKEAHHEA-TCRHEEEKKQLQVKLEEEKTHLQEKL-------------RLQHEMELKARLTQAQASFEREREG 522
Cdd:COG1196 503 YEGFLEGVKAALLLAgLRGLAGAVAVLIGVEAAYEAALEAALaaalqnivveddeVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 523 LQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRElqEGRYESEKLQQENSILRNEITTLNEED 602
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE--AALRRAVTLAGRLREVTLEGEGGSAGG 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 603 SISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM 682
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
570 580 590
....*....|....*....|....*....|...
gi 2462540516 683 LCQKEKEPGNSALEEREQEK--FNLKEELERCK 713
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPdlEELERELERLE 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
415-750 |
2.25e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 415 EKQLDETvvsckkaQENMkQRHENETHTLEKQISDLKN--EIAEL-QGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKT 491
Cdd:COG1196 178 ERKLEAT-------EENL-ERLEDILGELERQLEPLERqaEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 492 HLQEKLRLQHEM--ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQ---FHQEQLTSLVEKHTLEKEELR--K 564
Cdd:COG1196 250 ELEAELEELEAElaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiaRLEERRRELEERLEELEEELAelE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 565 ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQI 644
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 645 SELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEpgNSALEEREQEKFNLKEELERCKVQSSTLVSSLE 724
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL--EEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340
....*....|....*....|....*.
gi 2462540516 725 AELSEVKIQTHIVQQENHLLKDELEK 750
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAA 513
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
179-787 |
3.67e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 3.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 179 ASEVDDHHAAIERRNEYNLRKLdEEYKERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEEN------YIRDRLA 252
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKA-EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEeakkaeEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 253 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDP-SSAEFFLQEERLTQMRNEYERQCRVLQDQVDE 331
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 332 LQSELEEYRAQGRVLRLPLKNSpSEEVEANSGGIEPEHGLGSEEcnplnmSIEAELVIEQMKEQHHRDicclrlELEDKV 411
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAA-ADEAEAAEEKAEAAEKKKEEA------KKKADAAKKKAEEKKKAD------EAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 412 RHYEKQLDETvvscKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKT 491
Cdd:PTZ00121 1401 EEDKKKADEL----KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 492 HLQEKLRLQHEMELKARLTQAQASFEREREGLQSSA----WTEEKVRG--LTQELEQFHQEQLTSLVEKHTLEK----EE 561
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAdeakKAEEAKKAdeAKKAEEAKKADEAKKAEEKKKADElkkaEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 562 LRK-------ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSisNLKLGTLNGSQEEMWQKTETVKQENaaVQ 634
Cdd:PTZ00121 1557 LKKaeekkkaEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK--KMKAEEAKKAEEAKIKAEELKKAEE--EK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 635 KMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKV 714
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462540516 715 QSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALSEE 787
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE--EKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
190-562 |
5.82e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 190 ERRNEyNLRKLD--EEYKERIAALKNELRKEREQILQQAGKQR--LELEQEIEKAKTEENYIRDRLALSLKENSRLENEL 265
Cdd:COG1196 172 ERKEE-AERKLEatEENLERLEDILGELERQLEPLERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 266 LEN--AEKLAEYENLTNKLQRnLENVLAEKFGDLDPSSAEFFLQEERLTQMrneyERQCRVLQDQVDELQSELEEYRAQG 343
Cdd:COG1196 251 LEAelEELEAELAELEAELEE-LRLELEELELELEEAQAEEYELLAELARL----EQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 344 RVLRLPLKNSPSEEVEANSGGIEpehglgseecnplnmsIEAELVIEQMKEQHHRDiccLRLELEDKVRHYEKQLDETVV 423
Cdd:COG1196 326 AELEEELEELEEELEELEEELEE----------------AEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 424 ScKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATcrhEEEKKQLQVKLEEEKTHLQEKLRLQHEM 503
Cdd:COG1196 387 E-LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE---EEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462540516 504 ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEEL 562
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
139-600 |
1.22e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 139 ALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR-----KLDEEYKERIAALKN 213
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllaeaGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 214 ELRKEREQILQQAGKQRL---ELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENvL 290
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-L 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 291 AEKFGDL--DPSSAEFFLQE-----ERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQ--GRvlrlPLKNSPseevean 361
Cdd:PRK02224 397 RERFGDApvDLGNAEDFLEElreerDELREREAELEATLRTARERVEEAEALLEAGKCPecGQ----PVEGSP------- 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 362 sggiepeHGLGSEECNPLNMSIEAELviEQMKEQhhRDICCLRLELEDKVRHYEKQLdETVVSCKKAQENMKQRHENETH 441
Cdd:PRK02224 466 -------HVETIEEDRERVEELEAEL--EDLEEE--VEEVEERLERAEDLVEAEDRI-ERLEERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 442 TLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKL-RLQHEMELKARLTQAQASFERER 520
Cdd:PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA-ELNSKLAELKERIeSLERIRTLLAAIADAEDEIERLR 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 521 EGLQSSAWTEEKVRGLTQELEQFHQEqLTSLVEKHTLEKEELRKELLEKHQR----ELQEGRYESEKLQQENSILRNEIT 596
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRERKRE-LEAEFDEARIEEAREDKERAEEYLEqveeKLDELREERDDLQAEIGAVENELE 691
|
....
gi 2462540516 597 TLNE 600
Cdd:PRK02224 692 ELEE 695
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
531-838 |
3.86e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 531 EKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELlEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDsisnlklg 610
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAEL-EELEAELEELEAELAELEAELEELRLELEELELEL-------- 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 611 tlngsqEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEP 690
Cdd:COG1196 284 ------EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA--EEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 691 GNSALEEREQEKFNLKEELERckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCpdLSDFQQKISSV 770
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAE---AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL--EEELEELEEAL 430
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462540516 771 LSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLED 838
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
558-1188 |
2.33e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 558 EKEELRKELL----EKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAV 633
Cdd:TIGR02168 221 ELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 634 QKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELERCK 713
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL--KEELESLEAELEELEAELEELESRLEELE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 714 VQSSTLVSSL-EAELSEVKIQTHIVQQENHL--LKDELEKMKQLHRCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNS 790
Cdd:TIGR02168 379 EQLETLRSKVaQLELQIASLNNEIERLEARLerLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 791 CVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMK------SDLRVTQQEKEAL 864
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgvlSELISVDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 865 KQEVMSLHkqLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQ 944
Cdd:TIGR02168 539 IEAALGGR--LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 945 LESNLLPK-----------HQKHLNPSGTMNPTEQEKLSLKRECDQF---QKEQSPANRKvSQMNSLEQELETIHLENEG 1010
Cdd:TIGR02168 617 ALSYLLGGvlvvddldnalELAKKLRPGYRIVTLDGDLVRPGGVITGgsaKTNSSILERR-REIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 1011 LKKKQVKLDEQLMEMQHLRSTAtpspsphawDLQLLQQQACPMVPREQFLQLQRQLLQAERINQHLQEELENRTSETNTP 1090
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQL---------RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 1091 QGNQEQLvtvmEERMIEVEQKLKLvkrlLQEKVNQLKEQLCKNTKA----DAMVKDLYVENAQLLKALEVTEQRQKTAEK 1166
Cdd:TIGR02168 767 EERLEEA----EEELAEAEAEIEE----LEAQIEQLKEELKALREAldelRAELTLLNEEAANLRERLESLERRIAATER 838
|
650 660
....*....|....*....|..
gi 2462540516 1167 KNYLLEEKIASLSNIVRNLTPA 1188
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAE 860
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
93-789 |
2.61e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 93 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 172
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 173 KLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELrkereqilqqagkqrLELEQEIEKAKTEENYIRDRLA 252
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE---------------LELKSEEEKEAQLLLELARQLE 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 253 LSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDEL 332
Cdd:pfam02463 419 DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 333 QSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEpEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVR 412
Cdd:pfam02463 499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLG-DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 413 HYEKQLDETVVSCKK----------------------AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHE 470
Cdd:pfam02463 578 RKLRLLIPKLKLPLKsiavleidpilnlaqldkatleADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 471 ATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTS 550
Cdd:pfam02463 658 LAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEE 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 551 LVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQEN 630
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 631 AAVQKMVENLKKqISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELE 710
Cdd:pfam02463 818 EEEQLLIEQEEK-IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEK 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 711 RCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRCPDLS--DFQQKISSVLSYNEKLLKEKEALSEEL 788
Cdd:pfam02463 897 EEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEkeKEENNKEEEEERNKRLLLAKEELGKVN 976
|
.
gi 2462540516 789 N 789
Cdd:pfam02463 977 L 977
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-343 |
3.07e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 148 RHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY---KERIAALKNELRKER 219
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELerlEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 220 EQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEyenltnkLQRNLENVLAEkfgdldp 299
Cdd:COG4913 330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA-------LRAEAAALLEA------- 395
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2462540516 300 SSAEFFLQEERLTQMRNEYERqcrvLQDQVDELQSELEEYRAQG 343
Cdd:COG4913 396 LEEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRK 435
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
146-340 |
5.52e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 146 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE---RIAALKNELRKEREQI 222
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEleeEISELENEIKELEQEI 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 223 lqqagkQRLE----LEQEIEKAKTEENYIrdRLALSLKENSRLENELLENAEKLAEYENLTNKL------QRNLENVLAE 292
Cdd:PRK05771 124 ------ERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEE 195
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462540516 293 KFGDLDPSSAEFFlQEERLTQMRNEYERQCRVLQDQVDELQSELEEYR 340
Cdd:PRK05771 196 ELKKLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELA 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
94-796 |
7.83e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 7.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 94 EEGIENSQEILKALDFSLDGNINLTELTLALENELlvtknSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEK 173
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELI-----KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 174 LKSLMasevddhhaaierrneynlrkldEEYKERIAALKNELRKEREQIlQQAGKQRLELEQEIEKakteenyirdrlal 253
Cdd:PRK03918 236 LKEEI-----------------------EELEKELESLEGSKRKLEEKI-RELEERIEELKKEIEE-------------- 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 254 sLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKfgdldpssaefflqeERLTQMRNEYERQCRVLQDQVDELQ 333
Cdd:PRK03918 278 -LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL---------------SRLEEEINGIEERIKELEEKEERLE 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 334 sELEEYRaqgrvlrlplknspsEEVEANSGGIEPEHGLgseecnplnmsIEAELVIEQMKEQHHRDICCLRLEledkvrH 413
Cdd:PRK03918 342 -ELKKKL---------------KELEKRLEELEERHEL-----------YEEAKAKKEELERLKKRLTGLTPE------K 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 414 YEKQLDETvvsckkaqENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEA-TCRH---EEEKKQLQVK---- 485
Cdd:PRK03918 389 LEKELEEL--------EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpVCGReltEEHRKELLEEytae 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 486 ---LEEEKTHLQEKLRlqhemELKARLTQAQASFEREREgLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEEL 562
Cdd:PRK03918 461 lkrIEKELKEIEEKER-----KLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 563 RKelLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEmwQKTETVKQENAAVQKMVEnLKK 642
Cdd:PRK03918 535 IK--LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE--ELEERLKELEPFYNEYLE-LKD 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 643 QISELKIKNQQLDLENTELSQKnsqnQEKLQELNQRLtEMLCQKEKEPGNSALEEREQEKFNLKEELERckvqsstLVSS 722
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKA----FEELAETEKRL-EELRKELEELEKKYSEEEYEELREEYLELSR-------ELAG 677
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462540516 723 LEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLA 796
Cdd:PRK03918 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKK--ELEKLEKALERVEELREKVKKYKALLKERALSKVGEIA 749
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
406-935 |
9.76e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 9.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 406 ELEDKVRHYEKQlDETVVSCKKAQENMKQRHE---NETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEekkql 482
Cdd:PRK02224 217 ELDEEIERYEEQ-REQARETRDEADEVLEEHEerrEELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE----- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 483 qvkLEEEKTHLQEKLRLQhEMELKArLTQAQASFEREREGLQSSAwteEKVRGLTQELEQfHQEQLTSLVEKHTLEKEEL 562
Cdd:PRK02224 291 ---LEEERDDLLAEAGLD-DADAEA-VEARREELEDRDEELRDRL---EECRVAAQAHNE-EAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 563 RKELLEKhQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKK 642
Cdd:PRK02224 362 REEAAEL-ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 643 QISElkikNQQL-----------DLENTELSQKNSQNQEKLQELNQRLTEMLCQKEkepgnsALEEREQEKFNLKE---E 708
Cdd:PRK02224 441 RVEE----AEALleagkcpecgqPVEGSPHVETIEEDRERVEELEAELEDLEEEVE------EVEERLERAEDLVEaedR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 709 LERCKVQSSTLVSSLEAELSEVKIQTHIVQqENHLLKDELEKMKQLHR---CPDLSDFQQKISSVLSYNEKLLKEKEALs 785
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAE-ELRERAAELEAEAEEKReaaAEAEEEAEEAREEVAELNSKLAELKERI- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 786 EELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALK 865
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462540516 866 -QEVMSLHKQLQNAGGkswapeiathpsGLHNQQKRLS--WDKLDHLMNEEQQL--LWQENERLQTMVQNTKAEL 935
Cdd:PRK02224 669 lDELREERDDLQAEIG------------AVENELEELEelRERREALENRVEALeaLYDEAEELESMYGDLRAEL 731
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
474-764 |
1.10e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 474 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgltqELEQFHQEQLTSLVE 553
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKR----ELERIRQEEIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 554 KhTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSI----SNLKLGTLNGSQEEMWQKTETVKQE 629
Cdd:pfam17380 376 R-MRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIraeqEEARQREVRRLEEERAREMERVRLE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 630 NAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKL-QELNQRLTEM--------LCQKEKEPGNSALEEREQ 700
Cdd:pfam17380 455 EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILeKELEERKQAMieeerkrkLLEKEMEERQKAIYEEER 534
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462540516 701 ------EKFNLKEELERCKVQSSTLV-----SSLEAELSEVKIQTHIVQQENHLLKDE----LEKMKQLHRcPDLSDFQ 764
Cdd:pfam17380 535 rreaeeERRKQQEMEERRRIQEQMRKateerSRLEAMEREREMMRQIVESEKARAEYEattpITTIKPIYR-PRISEYQ 612
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
85-285 |
1.75e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 85 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNsihQAALASFKAEIRHLLERVDQVVREKE 162
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 163 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKER---IAALKNELRKEREQILQ 224
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPNhpdVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462540516 225 QAGKQRLELEQEIEKAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRN 285
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVEVA 363
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
86-562 |
1.87e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 86 ERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLR 165
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 166 SDLDKAEKLKSLMASevddHHAAIERRNEYNLRKLDEEYKERIAALknELRKEREQILQQAGKQRLELEQEIEKAKTEEN 245
Cdd:COG1196 404 ELEEAEEALLERLER----LEEELEELEEALAELEEEEEEEEEALE--EAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 246 YIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDL--DPSSAEFFLQEERLTQMRNEYERQCR 323
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLigVEAAYEAALEAALAAALQNIVVEDDE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 324 VLQDQVDELQSeleeyRAQGRVLRLPLKNSPSEEVEANSGGIEPEHglgseecnPLNMSIEAELVIEQMKEQHHRDICCL 403
Cdd:COG1196 558 VAAAAIEYLKA-----AKAGRATFLPLDKIRARAALAAALARGAIG--------AAVDLVASDLREADARYYVLGDTLLG 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 404 RLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQ 483
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE----LELEEALL 700
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462540516 484 VKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEEL 562
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
137-347 |
1.93e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 137 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS---------EVDDHHAAIERRNEyNLRKLD------ 201
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEA-ELERLDassddl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 202 EEYKERIAALKNELRKEREQIlQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 281
Cdd:COG4913 688 AALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462540516 282 LQRNLENvlaekfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLR 347
Cdd:COG4913 767 LRENLEE-------RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLE 825
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
182-568 |
2.03e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 182 VDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAG--KQRLELEQEIEKAKTEENYIRDRLALSLKENS 259
Cdd:TIGR02169 626 VEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSepAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 260 RLENELLENAEKLAEYENLTNKLQRNlENVLAEKFGDLdpssaEFFLQEerLTQMRNEYERQCRVLQDQVDELQSELEEY 339
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQE-EEKLKERLEEL-----EEDLSS--LEQEIENVKSELKELEARIEELEEDLHKL 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 340 RAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLD 419
Cdd:TIGR02169 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 420 ETVVSCKKAQENMKqRHENETHTLE-------KQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTH 492
Cdd:TIGR02169 858 NLNGKKEELEEELE-ELEAALRDLEsrlgdlkKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462540516 493 LQEKLRLQHEMELKARLTQAQASFEREREGLQSsawTEEKVRGLTQELEQFhQEQLTSLVEKH-TLEKEelRKELLE 568
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA---LEPVNMLAIQEYEEV-LKRLDELKEKRaKLEEE--RKAILE 1007
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
406-788 |
3.01e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.63 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 406 ELEDKVRHYEKQLDEtvvsckkaQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEE---KKQL 482
Cdd:pfam01576 191 DLEERLKKEEKGRQE--------LEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEEtaqKNNA 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 483 QVKLEEEKTHLQEKLR-LQHEMELKARLTQAQASFEREREGLQSS---------------AWTEEKVRGLTQELEQ---F 543
Cdd:pfam01576 263 LKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTEledtldttaaqqelrSKREQEVTELKKALEEetrS 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 544 HQEQLTSLVEKHTLEKEELrKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGS-QEEMWQK 622
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEEL-TEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQlQELQARL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 623 TETVKQENAAVQKM------VENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQ-ELNQRLTEMLCQKEKEPGNSAL 695
Cdd:pfam01576 422 SESERQRAELAEKLsklqseLESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQeETRQKLNLSTRLRQLEDERNSL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 696 EEREQEKFNLKEELERckvqsstLVSSLEAELSEVKIQthiVQQENHLLKDELEKMKQLHRcpDLSDFQQKISSVLSYNE 775
Cdd:pfam01576 502 QEQLEEEEEAKRNVER-------QLSTLQAQLSDMKKK---LEEDAGTLEALEEGKKRLQR--ELEALTQQLEEKAAAYD 569
|
410
....*....|...
gi 2462540516 776 KLLKEKEALSEEL 788
Cdd:pfam01576 570 KLEKTKNRLQQEL 582
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
413-1013 |
3.47e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 413 HYEKQLDETVVSCKKAQENMKQR---HENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEe 489
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNESnelHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHE- 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 490 kthLQEKLRLQHEMelkarLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELrKELLEK 569
Cdd:pfam15921 154 ---LEAAKCLKEDM-----LEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSL-GSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 570 HQRElqegryesekLQQENSILRNEITTLneEDSISNLKLGTLNGSQEEMWQKTETVKQ----ENAAVQKMVENLKKQIS 645
Cdd:pfam15921 225 ILRE----------LDTEISYLKGRIFPV--EDQLEALKSESQNKIELLLQQHQDRIEQliseHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 646 ELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekepgNSALEEREQEKFNLKEELERCKVQSSTlvsslea 725
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQL---------RSELREAKRMYEDKIEELEKQLVLANS------- 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 726 ELSEVKIQTHIVQQENHLLKDELEKMkqlhrCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRI 805
Cdd:pfam15921 357 ELTEARTERDQFSQESGNLDDQLQKL-----LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 806 ATMKQEQKSweHQSASLKSQLVASQEKVQNLEdTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAP 885
Cdd:pfam15921 432 EALLKAMKS--ECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 886 EIATHPSGLHNQQKR----LSWDKLDHLMNEEQQLlwqenERLQTMVQNTKAELTHSR---EKVRQLESNLLPKHQKHLN 958
Cdd:pfam15921 509 ERAIEATNAEITKLRsrvdLKLQELQHLKNEGDHL-----RNVQTECEALKLQMAEKDkviEILRQQIENMTQLVGQHGR 583
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462540516 959 PSGTMnptEQEKLSLKRECD----QFQKEQSPANRKVSQMNSLEQ-----ELETIHLENEGLKK 1013
Cdd:pfam15921 584 TAGAM---QVEKAQLEKEINdrrlELQEFKILKDKKDAKIRELEArvsdlELEKVKLVNAGSER 644
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
407-1162 |
7.87e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 407 LEDKVRHYEKQLDETVVSCKKAQEnmKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVK- 485
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQ--KREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKa 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 486 -LEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKhtlEKEELRK 564
Cdd:TIGR00618 302 vTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIS---CQQHTLT 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 565 ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQI 644
Cdd:TIGR00618 379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 645 SELKIKNQQLDLENTELSQKnsqnqeklqelnqrltEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLE 724
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTK----------------EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDN 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 725 AELSEVKIQTHIVQQENHllkdelekmkqlhrcpdlsdfQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSsllehr 804
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQL---------------------ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL------ 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 805 iatmkqeqkswehqsASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEvmSLHKQLQNAGGKSWA 884
Cdd:TIGR00618 576 ---------------TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP--EQDLQDVRLHLQQCS 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 885 PEIATHPSGLHNQQKRLSWDKLDH---LMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSG 961
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREhalSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 962 TMNPTEQEKLSLKREcdqfqkeqspanrkvsqmnsLEQELETIhleNEGLKKKQVKLDEQLMEmqhlrstatpspsphaw 1041
Cdd:TIGR00618 719 EFNEIENASSSLGSD--------------------LAAREDAL---NQSLKELMHQARTVLKA----------------- 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 1042 dLQLLQQQACPMVPREQFLQLQRqllqaerinQHLQEELENRTSETNTPQGNQEQLVTVMEERMIEVEQKLKLVKRLLQE 1121
Cdd:TIGR00618 759 -RTEAHFNNNEEVTAALQTGAEL---------SHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ 828
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 2462540516 1122 KVNQLKEQLCKNTKADAMVKDLYVENAQLLKALEVTEQRQK 1162
Cdd:TIGR00618 829 EEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
569-794 |
8.65e-05 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 46.66 E-value: 8.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 569 KHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEemwqkTETVKQENAAVQK-----MVENLKKQ 643
Cdd:COG5059 347 DSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKE-----TETLKSRIDLIMKsiisgTFERKKLL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 644 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLcqKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSL 723
Cdd:COG5059 422 KEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLN--KLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLN 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462540516 724 EAELSEVKIQTHIVQQENHLLKDELEkmkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDK 794
Cdd:COG5059 500 LRSSRSHSKFRDHLNGSNSSTKELSL---------NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDV 561
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
159-618 |
1.16e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 159 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRKEREQILQQagKQRLELEQEIE 238
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 239 KAKTEENYIRDRLAlslkensRLENELLENAEKLAEYENLTNKLQRnLENVLAEKFGDLDPSSAEfflQEERLTQMRNEY 318
Cdd:COG4717 136 ALEAELAELPERLE-------ELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEE---ELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 319 ERQCRVLQDQVDELQSELEEYRAQGRVLRLPL-KNSPSEEVEANS------GGIEPEHGLGSEECNPLNMSIEAELVIEQ 391
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELeAAALEERLKEARlllliaAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 392 MkeqhhrdICCLRLELEDKVRHYEKQLDETVVS------CKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK 465
Cdd:COG4717 285 L-------LALLFLLLAREKASLGKEAEELQALpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 466 EAHHEATC-RHEEEKKQL--QVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRgLTQELEQ 542
Cdd:COG4717 358 ELEEELQLeELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE-LEEELEE 436
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462540516 543 FhQEQLTSLVEKHtlekEELRKELLE-KHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEE 618
Cdd:COG4717 437 L-EEELEELEEEL----EELREELAElEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
532-1022 |
1.32e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 532 KVRGLTQELEQFHQEQLTSLVEKHTLEKEELR-KELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLG 610
Cdd:TIGR04523 97 KINKLNSDLSKINSEIKNDKEQKNKLEVELNKlEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 611 TLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISelkiKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMlcqkekep 690
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQISELKKQNNQLKDNIEKKQQEINEK-------- 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 691 gNSALEEREQEKFNLKEELERCK----------VQSSTLVSSLEAELSEVKIQTHIVQQE-----NHLLKDELEKMKQLH 755
Cdd:TIGR04523 245 -TTEISNTQTQLNQLKDEQNKIKkqlsekqkelEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 756 RC--PDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSsllEHRIATMKQEQKSWEHQSASLKSQLVASQEKV 833
Cdd:TIGR04523 324 EEiqNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 834 QNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEE 913
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 914 QQLLWQENERLQTMVQ---NTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRK 990
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKelkKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE 560
|
490 500 510
....*....|....*....|....*....|..
gi 2462540516 991 vSQMNSLEQELETIHLENEGLKKKQVKLDEQL 1022
Cdd:TIGR04523 561 -KEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
558-753 |
1.56e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 558 EKEELRKELlEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMV 637
Cdd:COG4942 21 AAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 638 ENLKKQISELKIKNQQLDLENTE------------------LSQKNSQNQEKLQELNQRLTEMLCQKEK-EPGNSALEER 698
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAElEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462540516 699 EQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQ 753
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
427-601 |
2.92e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 427 KAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAtcrhEEEKKQLQVKLEEEKTHLQEKLRLQHEM--- 503
Cdd:COG4942 44 AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAELRAELEAQKEELAELLRALYRLgrq 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 504 -------------ELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQfHQEQLTSLVEKHTLEKEEL------RK 564
Cdd:COG4942 120 pplalllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA-ERAELEALLAELEEERAALealkaeRQ 198
|
170 180 190
....*....|....*....|....*....|....*..
gi 2462540516 565 ELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEE 601
Cdd:COG4942 199 KLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
428-647 |
3.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 428 AQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQvKLEEEKTHLQEKLRlqhemELKA 507
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELA-----ELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 508 RLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKE--ELRKELLEKHQRELQEGRYESEKLQ 585
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462540516 586 QENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISEL 647
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
444-576 |
5.79e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 444 EKQISDLKNEiAELQGQAAVL--KEAHHEATCRHEEEKKQLQVKLEE-EKTHLQEKLRLQHEMELkarLTQAQASFERER 520
Cdd:PRK12704 41 KRILEEAKKE-AEAIKKEALLeaKEEIHKLRNEFEKELRERRNELQKlEKRLLQKEENLDRKLEL---LEKREEELEKKE 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462540516 521 EGLQSsawTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE 576
Cdd:PRK12704 117 KELEQ---KQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
532-752 |
6.04e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 532 KVRGLTQEL-----EQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISN 606
Cdd:PHA02562 175 KIRELNQQIqtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 607 LKLGTLNGSQEEMWQKTETVKQEnaavQKMVEN------LKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLT 680
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKV----IKMYEKggvcptCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMD 330
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462540516 681 EMLCQkekepgnsaleereQEKFN-LKEELERCKVQSSTLVSS---LEAELSEVKIQTHIVQQENHLLKDELEKMK 752
Cdd:PHA02562 331 EFNEQ--------------SKKLLeLKNKISTNKQSLITLVDKakkVKAAIEELQAEFVDNAEELAKLQDELDKIV 392
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
206-339 |
6.36e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 206 ERIAALK-NELRKEREQILQQAGKQRLELEQEIEKAKTEENyirdrlalsLKENSRLENELlenAEKLAEYENLTNKLQR 284
Cdd:PRK12704 26 KKIAEAKiKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEI---------HKLRNEFEKEL---RERRNELQKLEKRLLQ 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2462540516 285 NlENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEY 339
Cdd:PRK12704 94 K-EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
657-903 |
7.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 7.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 657 ENTELSQKNSQNQEKLQELNQRLTEMlcQKEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHI 736
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--KKEEKALLKQLAALERRIAALARRIR----ALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 737 VQQENHLLKDELEKMK----QLHRCPDL------SDFQQKISSvLSYNEKLLKEKEALSEELNSCVDKLAkssllehria 806
Cdd:COG4942 95 LRAELEAQKEELAELLralyRLGRQPPLalllspEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELA---------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 807 tmkQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQNAGGKSWAPE 886
Cdd:COG4942 164 ---ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|....*..
gi 2462540516 887 IATHPSGLHNQQKRLSW 903
Cdd:COG4942 241 ERTPAAGFAALKGKLPW 257
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
644-993 |
9.47e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 9.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 644 ISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQE-----KFNLKEELERCKVQSST 718
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 719 LVSSLEAELSEVKIQTHIVQQENHLLKDELEKMkqlhrcpdlsdfqqkissvlsyNEKLLKEKEALSEELNSCVDKL-AK 797
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEEL----------------------NKKIKDLGEEEQLRVKEKIGELeAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 798 SSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN 877
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 878 AGGKswapeiathpsgLHNQQKRLswDKLDHLMNE---EQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPK-- 952
Cdd:TIGR02169 383 TRDE------------LKDYREKL--EKLKREINElkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKal 448
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2462540516 953 -----HQKHLNPSGTMNPTEQEKLSLKRECDQFQKEQSPANRKVSQ 993
Cdd:TIGR02169 449 eikkqEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
407-607 |
1.09e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.07 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 407 LEDKVRHYEKQLDETVVSCKKAQENMKQRHEnethtlEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKL 486
Cdd:pfam05262 187 REDNEKGVNFRRDMTDLKERESQEDAKRAQQ------LKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 487 EEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKVRGLTQELEQFHQEQltslvEKHTLEKEELRKEL 566
Cdd:pfam05262 261 PKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA--KDHKAFDLKQESKASEKEA-----EDKELEAQKKREPV 333
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2462540516 567 LEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNL 607
Cdd:pfam05262 334 AEDLQKTKPQVEAQPTSLNEDAIDSSNPVYGLKVVDPITNL 374
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
434-566 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 434 QRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQ-------VKLEEEKTHLQEKL--RLQHEME 504
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggdrlEQLEREIERLERELeeRERRRAR 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462540516 505 LKARLTQAQASFEREREGL--QSSAWTEEkVRGLTQELEQFHQEQLTSLVEKHTLEKE--ELRKEL 566
Cdd:COG4913 364 LEALLAALGLPLPASAEEFaaLRAEAAAL-LEALEEELEALEEALAEAEAALRDLRRElrELEAEI 428
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
456-749 |
2.05e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.43 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 456 ELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEkTHLQEKLRLQHE-MELKArLTQAQASFEREREGLQSSAWTEEKVR 534
Cdd:pfam07111 54 ELEGSQALSQQAELISRQLQELRRLEEEVRLLRE-TSLQQKMRLEAQaMELDA-LAVAEKAGQAEAEGLRAALAGAEMVR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 535 G--------LTQELEQFHQEQLTSLVEKHTLEKEEL--RKELLEKHQRELQEGRYESEK----LQQENSILRNEITTLNE 600
Cdd:pfam07111 132 KnleegsqrELEEIQRLHQEQLSSLTQAHEEALSSLtsKAEGLEKSLNSLETKRAGEAKqlaeAQKEAELLRKQLSKTQE 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 601 EDSISNLKLGTLN---GSQEEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQ 677
Cdd:pfam07111 212 ELEAQVTLVESLRkyvGEQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQ 291
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462540516 678 RLTEMLCQKEKEpGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELE 749
Cdd:pfam07111 292 PSDSLEPEFPKK-CRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQ 362
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-692 |
2.14e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 137 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSlmASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELR 216
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK--KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 217 KEREQILQQAGKQRlelEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGD 296
Cdd:PTZ00121 1457 KKAEEAKKKAEEAK---KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 297 LDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLpLKNSPSEEVEANSGGIEPEHGLGSEEc 376
Cdd:PTZ00121 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE-AKKAEEARIEEVMKLYEEEKKMKAEE- 1611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 377 npLNMSIEAELVIEQMK--EQHHRDICCLRLELEDKVRHYEK-QLDETVVSCKKAQENMKQRHEN-ETHTLEKQISDLKN 452
Cdd:PTZ00121 1612 --AKKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKAEEDKkKAEEAKKAEEDEKK 1689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 453 EIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEK 532
Cdd:PTZ00121 1690 AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 533 VRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQrELQEGR-----YESEKLQQENSILRNEITT----LNEEDS 603
Cdd:PTZ00121 1770 AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA-NIIEGGkegnlVINDSKEMEDSAIKEVADSknmqLEEADA 1848
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 604 ISNLKLGTLNGSQEEMWQKTETVKQ--------ENAAVQKMVENLKKQISELKIKNQQLDLENTELS-QKNSQNQEKLQE 674
Cdd:PTZ00121 1849 FEKHKFNKNNENGEDGNKEADFNKEkdlkeddeEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIdDKLDKDEYIKRD 1928
|
570
....*....|....*...
gi 2462540516 675 LNQRLTEMLCQKEKEPGN 692
Cdd:PTZ00121 1929 AEETREEIIKISKKDMCI 1946
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
801-1002 |
2.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 801 LEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQN--- 877
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllr 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 878 ---AGGKSWAPEIATHPSGLHNQQKRLSWdkLDHLMNEEQQLLwQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQ 954
Cdd:COG4942 112 alyRLGRQPPLALLLSPEDFLDAVRRLQY--LKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462540516 955 KhlnpsgtmnpTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELE 1002
Cdd:COG4942 189 A----------LEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
550-711 |
2.59e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 550 SLVEKHTLEKEELRKELLEKHQRELQEGRYESE-KLQQENSILRNEIttlnEEDSISnlklgtlngsqeemwQKTETVKQ 628
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALlEAKEEIHKLRNEF----EKELRE---------------RRNELQKL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 629 ENAAVQKmVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEE 708
Cdd:PRK12704 88 EKRLLQK-EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
...
gi 2462540516 709 LER 711
Cdd:PRK12704 167 ARH 169
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
167-753 |
2.80e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 167 DLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKeriaalKNELRKEREQILQQAGKQRLELEQEIEKAKTEENY 246
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK------AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 247 IRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEkfgDLDPSSAEFFLQEERLTQMRNEYERQCRVLQ 326
Cdd:PTZ00121 1152 KRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE---DARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 327 -DQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEAN----SGGIEPEHGLGSEECNPLNMSIEAElviEQMKEQHHRDIC 401
Cdd:PTZ00121 1229 vKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHfarrQAAIKAEEARKADELKKAEEKKKAD---EAKKAEEKKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 402 CLRLELEDKVRHYE----------------------KQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQG 459
Cdd:PTZ00121 1306 EAKKKAEEAKKADEakkkaeeakkkadaakkkaeeaKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 460 QAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQE 539
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 540 LEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQEnsilrnEITTLNEEDSISNLKLGTLNGSQEEM 619
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD------EAKKAEEAKKADEAKKAEEAKKADEA 1539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 620 WQKTETVKQENAavqKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQElnQRLTEMLCQKEKEPGNSALEERE 699
Cdd:PTZ00121 1540 KKAEEKKKADEL---KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 2462540516 700 QEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQ 753
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
203-1025 |
3.40e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 203 EYKERIAALKNELRKEREQILQQAGKQRLELEQE----IEKAKTEENYirdrlALSLKENSRLENELLENAEKLAEYENL 278
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQElklkEQAKKALEYY-----QLKEKLELEEEYLLYLDYLKLNEERID 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 279 TNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEV 358
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 359 EANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKA---------Q 429
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAklkeeelelK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 430 ENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQV---KLEEEKTHLQEKLRLQHEMELK 506
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKqelKLLKDELELKKSEDLLKETQLV 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 507 ARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLE--------------KHQR 572
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKvaistavivevsatADEV 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 573 ELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVEnlKKQISELKIKNQ 652
Cdd:pfam02463 561 EERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE--GILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 653 QLDLENTELSQKNSQNQEKLQELNQRLTEMLcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKI 732
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLS-ELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 733 QTHIVQQENHLLKDELEKMkqlhrcpDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQ 812
Cdd:pfam02463 718 EAEELLADRVQEAQDKINE-------ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 813 KSwEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQEVMSLHKQLQnAGGKSWAPEIATHPS 892
Cdd:pfam02463 791 EK-EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE-EELERLEEEITKEEL 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 893 GLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTM--------- 963
Cdd:pfam02463 869 LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEllleeadek 948
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462540516 964 ----NPTEQEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEM 1025
Cdd:pfam02463 949 ekeeNNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
444-1021 |
3.48e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 444 EKQISDLKNEI-AELQGQAAVLKEAHHEATCRHEE----EKKQLQVKLEEEKT-HLQEKLRLQhemELKARLTQAQASFE 517
Cdd:COG5022 816 LACIIKLQKTIkREKKLRETEEVEFSLKAEVLIQKfgrsLKAKKRFSLLKKETiYLQSAQRVE---LAERQLQELKIDVK 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 518 REREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKhQRELQEGRYES-EKLQQENSILRNEIT 596
Cdd:COG5022 893 SISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEE-GPSIEYVKLPElNKLHEVESKLKETSE 971
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 597 TLNEEDSISNLKLGTLNGSQEEM--WQKTETVKQEN-AAVQKMVENLKK---QISELKIKNQQLDLENTELSQKN----- 665
Cdd:COG5022 972 EYEDLLKKSTILVREGNKANSELknFKKELAELSKQyGALQESTKQLKElpvEVAELQSASKIISSESTELSILKplqkl 1051
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 666 -SQNQEKLQELNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEV--------KIQTHI 736
Cdd:COG5022 1052 kGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFivaqmiklNLLQEI 1131
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 737 ---VQQENHLLKDELEKMKQLHRCPDLSDFQQKISSVLSYN-EKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQ 812
Cdd:COG5022 1132 skfLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPpFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFS 1211
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 813 KSWEHQSASLKSQLVASQEKVQNLEDTVqnvnLQMSRMKSDLRVTQQEKEalKQEVMSLHKQLQNAGgKSWAPEIATHPS 892
Cdd:COG5022 1212 KIFSGWPRGDKLKKLISEGWVPTEYSTS----LKGFNNLNKKFDTPASMS--NEKLLSLLNSIDNLL-SSYKLEEEVLPA 1284
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 893 GLHNQQK---------------RLSWDKLDHL-MNEEQQLLW---QENERLQTMVQNTKaelthSREKVRQLESNLLPKH 953
Cdd:COG5022 1285 TINSLLQyinvglfnalrtkasSLRWKSATEVnYNSEELDDWcreFEISDVDEELEELI-----QAVKVLQLLKDDLNKL 1359
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 954 QKHLNPSGTMNPTEQEKLSLKREC--------DQFQKEQSPANRKVSQMNSLEQELET--------------IHLENE-- 1009
Cdd:COG5022 1360 DELLDACYSLNPAEIQNLKSRYDPadkennlpKEILKKIEALLIKQELQLSLEGKDETevhlseifseekslISLDRNsi 1439
|
650 660
....*....|....*....|....
gi 2462540516 1010 ------------GLKKKQVKLDEQ 1021
Cdd:COG5022 1440 ykeevlsslsalLTKEKIALLDRK 1463
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
306-554 |
3.52e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 306 LQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLrlplknSPSEEVEANSGGIEpehglgseecnplnmSIEA 385
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV------DLSEEAKLLLQQLS---------------ELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 386 ELVIEQMKeqhhrdicclRLELEDKVRHYEKQLDETVVSCKKAQENmkqrheNETHTLEKQISDLKNEIAELQgqaAVLK 465
Cdd:COG3206 227 QLAEARAE----------LAEAEARLAALRAQLGSGPDALPELLQS------PVIQQLRAQLAELEAELAELS---ARYT 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 466 EAHHEATcRHEEEKKQLQVKLEEEKTHLQEKLRLQHEmELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEqFHQ 545
Cdd:COG3206 288 PNHPDVI-ALRAQIAALRAQLQQEAQRILASLEAELE-ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE-VAR 364
|
....*....
gi 2462540516 546 EQLTSLVEK 554
Cdd:COG3206 365 ELYESLLQR 373
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
529-726 |
3.74e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 529 TEEKVRGLTQELEQFhQEQLTSLVEkhtlEKEELRKELLEKhQRELQEGRYESEKLQQENSILRNEITTLNEE------- 601
Cdd:COG3883 21 KQKELSELQAELEAA-QAELDALQA----ELEELNEEYNEL-QAELEALQAEIDKLQAEIAEAEAEIEERREElgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 602 ---DSISNLKLGTLNGSQ--EEMWQKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELN 676
Cdd:COG3883 95 lyrSGGSVSYLDVLLGSEsfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2462540516 677 QRLTEMlcQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSLEAE 726
Cdd:COG3883 175 AQQAEQ--EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
567-749 |
3.82e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 567 LEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISE 646
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 647 LKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEM---LCQKEKEPGNSALEEREQEKFNLKEELERCKVQSSTLVSSL 723
Cdd:COG4372 127 LEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLqeeLAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAE 206
|
170 180
....*....|....*....|....*.
gi 2462540516 724 EAELSEVKIQTHIVQQENHLLKDELE 749
Cdd:COG4372 207 KLIESLPRELAEELLEAKDSLEAKLG 232
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
308-1022 |
3.97e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 308 EERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAEL 387
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 388 VIEQMKE---QHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVL 464
Cdd:pfam15921 171 QIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 465 KeahheatcrhEEEKKQLQVKLEEEKTHLqEKLRLQHEMELKArLTQAQASFEREREGLQSSAwteEKVRGLTQELEQFH 544
Cdd:pfam15921 251 K----------SESQNKIELLLQQHQDRI-EQLISEHEVEITG-LTEKASSARSQANSIQSQL---EIIQEQARNQNSMY 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 545 QEQLTSLVEKHTLEKEELRK---------ELLEKH----QRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGT 611
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREakrmyedkiEELEKQlvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 612 LNGSQEEMWQKT-----------ETVKQENAAVQKMVENLKKQISELKiknQQLDLENTELSQKNsQNQEKLQELNQRL- 679
Cdd:pfam15921 396 EKEQNKRLWDRDtgnsitidhlrRELDDRNMEVQRLEALLKAMKSECQ---GQMERQMAAIQGKN-ESLEKVSSLTAQLe 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 680 --TEMLCQ--KEKEPGNSALEEREQEKFNLKEELErckvQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLH 755
Cdd:pfam15921 472 stKEMLRKvvEELTAKKMTLESSERTVSDLTASLQ----EKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQ 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 756 RCPDLSDFQ--QKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKV 833
Cdd:pfam15921 548 TECEALKLQmaEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 834 QNLE-DTVQNVNLQMSRMKSdLRVTQQEKEALKQEVMSLHKQLQNAggkSWAPEIATHPSGLHNQQKRLSWDKLDHLMNE 912
Cdd:pfam15921 628 SDLElEKVKLVNAGSERLRA-VKDIKQERDQLLNEVKTSRNELNSL---SEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 913 EQQLLWQENERLQTM----------VQNTKAELTHSREKVRQLESNLLPKHQkhlnpsgTMNPTEQEKLSLKRECDQFQK 982
Cdd:pfam15921 704 AQSELEQTRNTLKSMegsdghamkvAMGMQKQITAKRGQIDALQSKIQFLEE-------AMTNANKEKHFLKEEKNKLSQ 776
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 2462540516 983 EQSPAnrkVSQMNSLEQELETIHLENEGLKKKQVKLDEQL 1022
Cdd:pfam15921 777 ELSTV---ATEKNKMAGELEVLRSQERRLKEKVANMEVAL 813
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
145-251 |
4.34e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 145 AEIRHLLERVDQVVREKEKLRSDLDKAEKLKslmASEVDDHHAAIERRneynLRKLDEEYKERIAALkNELRKEREQILQ 224
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFER---LAELRDELAELEEE----LEALKARWEAEKELI-EEIQELKEELEQ 482
|
90 100
....*....|....*....|....*..
gi 2462540516 225 QAGKqRLELEQEIEKAKTEENYIRDRL 251
Cdd:COG0542 483 RYGK-IPELEKELAELEEELAELAPLL 508
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
621-867 |
5.40e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 621 QKTETVKQENAAVQKMVENLKKQISELKIKNQQLDLENTELSQK---NSQNQEKLQELNQRLTEMLCQKEkepgnsaLEE 697
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKfgrSLKAKKRFSLLKKETIYLQSAQR-------VEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 698 REQEKFNLKEELERckVQSSTLVSS-LEAELSEVKIQTHIVQQENHLLKDELEKM-KQLHRCPDLSDFQQKISSVLSYNE 775
Cdd:COG5022 880 AERQLQELKIDVKS--ISSLKLVNLeLESEIIELKKSLSSDLIENLEFKTELIARlKKLLNNIDLEEGPSIEYVKLPELN 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 776 KLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTvqnvNLQMSRMKSDLR 855
Cdd:COG5022 958 KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL----PVEVAELQSASK 1033
|
250
....*....|..
gi 2462540516 856 VTQQEKEALKQE 867
Cdd:COG5022 1034 IISSESTELSIL 1045
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
212-811 |
5.76e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 212 KNELRKEREQILQQAGKQRLELEQEIEK-AKTEENYIRDRLALSLKENS----RLENELLENAEKL--------AEYENL 278
Cdd:pfam05483 25 KSNLSKNGENIDSDPAFQKLNFLPMLEQvANSGDCHYQEGLKDSDFENSeglsRLYSKLYKEAEKIkkwkvsieAELKQK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 279 TNKLQRNLENVLAEK-------FGDLDPS-SAEFFLQEER-LTQMRNEYERQCRVLQD---QVDELQSELEEYRAQGRVL 346
Cdd:pfam05483 105 ENKLQENRKIIEAQRkaiqelqFENEKVSlKLEEEIQENKdLIKENNATRHLCNLLKEtcaRSAEKTKKYEYEREETRQV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 347 RLPLKNSPSE--------EVEANSGGIEPEHGLGSE-------------ECNPLNMSIEAELVIEQMKEQHHRDICCLRL 405
Cdd:pfam05483 185 YMDLNNNIEKmilafeelRVQAENARLEMHFKLKEDhekiqhleeeykkEINDKEKQVSLLLIQITEKENKMKDLTFLLE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 406 ELEDKVRHYEKQldetvvsCKKAQENMKQRHENETHtLEKQISDLKNEIAELQGQAAVLKEAHHEATcrheeekKQLQVK 485
Cdd:pfam05483 265 ESRDKANQLEEK-------TKLQDENLKELIEKKDH-LTKELEDIKMSLQRSMSTQKALEEDLQIAT-------KTICQL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 486 LEEEKTHLQE--KLRLQHEM---ELKARLTQAQASFEREREGLQSSawtEEKVRGLTQELEQFHQ--EQLTSLVEKHTLE 558
Cdd:pfam05483 330 TEEKEAQMEElnKAKAAHSFvvtEFEATTCSLEELLRTEQQRLEKN---EDQLKIITMELQKKSSelEEMTKFKNNKEVE 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 559 KEELRKELLEKHQRELQEGRYE--SEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQEnaavqkm 636
Cdd:pfam05483 407 LEELKKILAEDEKLLDEKKQFEkiAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE------- 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 637 VENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQelNQRLTEMLCQKEKEPGNSALEEREQEKFNLKEELERCKVQS 716
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELK--KHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEF 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 717 STLVSSLEAELSevKIQTHIVQQENHLLKDELEKMKQLHRCPDL----SDFQQKISSVLSYNEKLLKEKEALSEELNSCV 792
Cdd:pfam05483 558 IQKGDEVKCKLD--KSEENARSIEYEVLKKEKQMKILENKCNNLkkqiENKNKNIEELHQENKALKKKGSAENKQLNAYE 635
|
650
....*....|....*....
gi 2462540516 793 DKLAKsslLEHRIATMKQE 811
Cdd:pfam05483 636 IKVNK---LELELASAKQK 651
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
146-284 |
5.80e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 146 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLmasEVDDH--------HAAIERRNEYNLRKLD-----------EEYKE 206
Cdd:PRK05771 101 EIKELEEEISELENEIKELEQEIERLEPWGNF---DLDLSlllgfkyvSVFVGTVPEDKLEELKlesdvenveyiSTDKG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 207 RIAAL---KNELRKEREQILQQAGKQRLELeQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAE-----YENL 278
Cdd:PRK05771 178 YVYVVvvvLKELSDEVEEELKKLGFERLEL-EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEellalYEYL 256
|
....*.
gi 2462540516 279 TNKLQR 284
Cdd:PRK05771 257 EIELER 262
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
476-874 |
5.92e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 476 EEEKKQLQVKLEEEKTHLQEKLRLQHEMElkaRLTQAQASFEREREGLQssawTEEKVRGLTQELEQFHQEqltslvekh 555
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLE----KLLQLLPLYQELEALEAE--------- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 556 tLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLK-LGTLNGSQEEMWQKTETVKQENAAVQ 634
Cdd:COG4717 141 -LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 635 KMVENLKKQISELKIKNQQLDLENTELSQKN-----------SQNQEKLQELNQRLTEMLC-----------QKEKEPGN 692
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEERLKEARLllliaaallalLGLGGSLLSLILTIAGVLFlvlgllallflLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 693 SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENhlLKDELEKMKQLHRCPDLSDFQQKISSVLS 772
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 773 YNE-----------KLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEqKSWEHQSASLKSQLVASQEKVQNLEDTVQ 841
Cdd:COG4717 378 EAGvedeeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDE-EELEEELEELEEELEELEEELEELREELA 456
|
410 420 430
....*....|....*....|....*....|....*
gi 2462540516 842 NVNLQMSRMKSD--LRVTQQEKEALKQEVMSLHKQ 874
Cdd:COG4717 457 ELEAELEQLEEDgeLAELLQELEELKAELRELAEE 491
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
220-1134 |
6.76e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 220 EQILQQAGKQRLELEQEI-----EKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKF 294
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAagsrlKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 295 GDLdpSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANsggiepehglgse 374
Cdd:pfam02463 225 YLL--YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELK------------- 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 375 ecnpLNMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEI 454
Cdd:pfam02463 290 ----LLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 455 AELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQE-KLRLQHEMELKARLTQAQASFEREREGLQSSawTEEKV 533
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEaQLLLELARQLEDLLKEEKKEELEILEEEEES--IELKQ 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 534 RGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLN 613
Cdd:pfam02463 444 GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 614 GSQEEMWQKTETVKQENAAVQKMVenlkKQISELKIKNQQLDLENTELSQKNSQNQEKLQeLNQRLTEMLCQKEKEPGNS 693
Cdd:pfam02463 524 IISAHGRLGDLGVAVENYKVAIST----AVIVEVSATADEVEERQKLVRALTELPLGARK-LRLLIPKLKLPLKSIAVLE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 694 ALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEKMKQLHRcpdlsdfqqkisSVLSY 773
Cdd:pfam02463 599 IDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEK------------SEVKA 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 774 NEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSD 853
Cdd:pfam02463 667 SLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 854 LRVTQQEK---EALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERLQTMVQN 930
Cdd:pfam02463 747 EEEEEEEKsrlKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 931 TKAELTHSREKVRQLESNLLpKHQKHLNPSGTMNPTEQEKLSLKRECDQFQKEqspaNRKVSQMNSLEQELETIHLENEG 1010
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQ-KLEKLAEEELERLEEEITKEELLQELLLKEEE----LEEQKLKDELESKEEKEKEEKKE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 1011 LKKKQVKLDEQLMEMQHLRSTATPSPSPhawDLQLLQQQACPMVPREQFLQLQRQLLQAERINQHLQEELENRTSETNTP 1090
Cdd:pfam02463 902 LEEESQKLNLLEEKENEIEERIKEEAEI---LLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLM 978
|
890 900 910 920
....*....|....*....|....*....|....*....|....
gi 2462540516 1091 QGNQEQLVTVMEERMIEVEQKLKLVKRLLQEKVNQLKEQLCKNT 1134
Cdd:pfam02463 979 AIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEF 1022
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
499-750 |
6.84e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 499 LQHEMELKARltQAQASFER-EREGLQSSawTEEKVRGLtqeleqfhqEQLTSLVEKHTLEKEELRKE--LLEKHQRELQ 575
Cdd:pfam17380 278 VQHQKAVSER--QQQEKFEKmEQERLRQE--KEEKAREV---------ERRRKLEEAEKARQAEMDRQaaIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 576 EGRYESEKLQQENSILRNEiTTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMveNLKKQISELKIKNQQLD 655
Cdd:pfam17380 345 ERERELERIRQEERKRELE-RIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKV--KILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 656 LENTELSQKNSQNQE---------------KLQELN-QRLTEMLCQKEKEPGNSALE-EREQEKFNLKEELERckvqsst 718
Cdd:pfam17380 422 MEQIRAEQEEARQREvrrleeeraremervRLEEQErQQQVERLRQQEEERKRKKLElEKEKRDRKRAEEQRR------- 494
|
250 260 270
....*....|....*....|....*....|..
gi 2462540516 719 lvSSLEAELSEVKIQTHIVQQENHLLKDELEK 750
Cdd:pfam17380 495 --KILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
159-677 |
6.94e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 159 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNE--YNLRKLDEEYKERIAALkNELRKEREQI---LQQAGKQRLEL 233
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllSNLKKKIQKNKSLESQI-SELKKQNNQLkdnIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 234 EQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEerltq 313
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQ----- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 314 mrneyERQCRVLQDQVDELQSELEEYRAQGRVLRLPLKNSPSEEVEANsggiepehglgsEECNPLNMSIEAELVIEQMK 393
Cdd:TIGR04523 320 -----EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ------------RELEEKQNEIEKLKKENQSY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 394 EQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENmKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEATC 473
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE-KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 474 RHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKarlTQAQASFEREREGLqssawtEEKVRGLTQEleqfhQEQLTSLVE 553
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSK---EKELKKLNEEKKEL------EEKVKDLTKK-----ISSLKEKIE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 554 KHTLEKEELRKELLEKhqrelqEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAV 633
Cdd:TIGR04523 528 KLESEKKEKESKISDL------EDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2462540516 634 QKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQ 677
Cdd:TIGR04523 602 IKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
94-291 |
7.52e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 94 EEGIENSQEILKALDFSLDgninltELTLALENEllvtknsihQAALASFKAEIRHllERVDQVVREKEKLRSDLDKAEK 173
Cdd:TIGR02169 750 EQEIENVKSELKELEARIE------ELEEDLHKL---------EEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEA 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 174 lkslMASEVDDHHAAIERRNEYnLRKLDEEYKERIAALKNElRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLAL 253
Cdd:TIGR02169 813 ----RLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
170 180 190
....*....|....*....|....*....|....*...
gi 2462540516 254 SLKENSRLENELLENAEKLAEYENLTNKLQRNLENVLA 291
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
174-795 |
7.69e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 174 LKSLMASEVDDHHAAIERRNEYN--LRKLDEEYKERIAALKNELRKEREQI------LQQAGKQRLELEQE-IEKAKTEE 244
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNqlLRTLDDQWKEKRDELNGELSAADAAVakdrseLEALEDQHGAFLDAdIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 245 NYIrDRLALSLKENSRLENELLENAEKL-AEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQeerLTQMRNEYERQCR 323
Cdd:pfam12128 347 EQL-PSWQSELENLEERLKALTGKHQDVtAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQ---LAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 324 VLQDQVDELQSELEEyraQGRVLRLPLKNspsEEVEANSGGIEPEHGLGSE----ECNPLNMSIEAELVIEQMKEQHHRD 399
Cdd:pfam12128 423 ELREQLEAGKLEFNE---EEYRLKSRLGE---LKLRLNQATATPELLLQLEnfdeRIERAREEQEAANAEVERLQSELRQ 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 400 ICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLK-EAHHEATCRHEEE 478
Cdd:pfam12128 497 ARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRtDLDPEVWDGSVGG 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 479 KKQL-QVKLEEEKthLQEKLRLQHEMELKARLTQAQASFEREREGL--------QSSAWTEEKVRGLTQELEQFHQEQLT 549
Cdd:pfam12128 577 ELNLyGVKLDLKR--IDVPEWAASEEELRERLDKAEEALQSAREKQaaaeeqlvQANGELEKASREETFARTALKNARLD 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 550 slVEKHTLEKEELRKELLEKHQRELQEGRYESEKLQQENSILRNEITTLNEEDSISNLKLGTlngSQEEMWQktETVKQE 629
Cdd:pfam12128 655 --LRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREART---EKQAYWQ--VVEGAL 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 630 NAAVQKMVENLKKQISELKIKNQQLDLEN-TELSQK--NSQNQEKLQELNQRLTEMLCQKEKEpGNSALEERE------- 699
Cdd:pfam12128 728 DAQLALLKAAIAARRSGAKAELKALETWYkRDLASLgvDPDVIAKLKREIRTLERKIERIAVR-RQEVLRYFDwyqetwl 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 700 QEKFNLKEELERCKVQSSTLVSSLEAELSEVKI--------------QTHIVQQENHLLKDELEKMKQLHRCPDLSDFQQ 765
Cdd:pfam12128 807 QRRPRLATQLSNIERAISELQQQLARLIADTKLrraklemerkasekQQVRLSENLRGLRCEMSKLATLKEDANSEQAQG 886
|
650 660 670
....*....|....*....|....*....|
gi 2462540516 766 KISSVLSYNEKLLKEKEALSEELNSCVDKL 795
Cdd:pfam12128 887 SIGERLAQLEDLKLKRDYLSESVKKYVEHF 916
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
532-841 |
8.07e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.61 E-value: 8.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 532 KVRGLTQELEQFhQEQLTSLVEKHTLEKEELRKELLEKHQRELQE---GRYESEKLQQENSILRNEITTLNEEDSISNLK 608
Cdd:PLN03229 430 PVRELEGEVEKL-KEQILKAKESSSKPSELALNEMIEKLKKEIDLeytEAVIAMGLQERLENLREEFSKANSQDQLMHPV 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 609 LGtlngsqeemwQKTETVKQE---NAAVQKMVENLKKQISELKIKNqqldlENTELSQKNSQNQEKLQELNQRLTEMLCQ 685
Cdd:PLN03229 509 LM----------EKIEKLKDEfnkRLSRAPNYLSLKYKLDMLNEFS-----RAKALSEKKSKAEKLKAEINKKFKEVMDR 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 686 KE-KEPGNSALEEREQEKFN--------LKEELERCKvqsstlvSSLEAELSEV----KIQTHIVQQENhllkdelekMK 752
Cdd:PLN03229 574 PEiKEKMEALKAEVASSGASsgdeldddLKEKVEKMK-------KEIELELAGVlksmGLEVIGVTKKN---------KD 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 753 QLHRCPDlSDFQQKIssvlsynekllkekEALSEELNSCVDKLAKSSLLEHRIATMKQEqkswehQSASLKSQLVASQEK 832
Cdd:PLN03229 638 TAEQTPP-PNLQEKI--------------ESLNEEINKKIERVIRSSDLKSKIELLKLE------VAKASKTPDVTEKEK 696
|
....*....
gi 2462540516 833 VQNLEDTVQ 841
Cdd:PLN03229 697 IEALEQQIK 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
202-342 |
9.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462540516 202 EEYKERIAALKNELrKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNK 281
Cdd:COG4942 23 AEAEAELEQLQQEI-AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
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90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462540516 282 LQRNLENVL--AEKFGDLDPS----SAEFFLQEERLTQMRNEYERQcrvLQDQVDELQSELEEYRAQ 342
Cdd:COG4942 102 QKEELAELLraLYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
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