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Conserved domains on  [gi|2462540632|ref|XP_054232223|]
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protein O-mannosyl-transferase TMEM260 isoform X3 [Homo sapiens]

Protein Classification

glycosyltransferase family protein( domain architecture ID 229536)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2723 super family cl48106
Protein of unknown function (DUF2723); This family is conserved in bacteria. The function is ...
 1-50 2.95e-05

Protein of unknown function (DUF2723); This family is conserved in bacteria. The function is not known.


The actual alignment was detected with superfamily member pfam11028:

Pssm-ID: 463208  Cd Length: 179  Bit Score: 44.84  E-value: 2.95e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462540632   1 MALTVHFEEAATAKERSKVAKIGAFCCGLSLCNqHTIILYVLCIIPWILF 50
Cdd:pfam11028 123 FWLILKWEDEADEPRSDRWLVLIAYLIGLSIGV-HLLNLLTIPAIALLYY 171
 
Name Accession Description Interval E-value
DUF2723 pfam11028
Protein of unknown function (DUF2723); This family is conserved in bacteria. The function is ...
 1-50 2.95e-05

Protein of unknown function (DUF2723); This family is conserved in bacteria. The function is not known.


Pssm-ID: 463208  Cd Length: 179  Bit Score: 44.84  E-value: 2.95e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462540632   1 MALTVHFEEAATAKERSKVAKIGAFCCGLSLCNqHTIILYVLCIIPWILF 50
Cdd:pfam11028 123 FWLILKWEDEADEPRSDRWLVLIAYLIGLSIGV-HLLNLLTIPAIALLYY 171
 
Name Accession Description Interval E-value
DUF2723 pfam11028
Protein of unknown function (DUF2723); This family is conserved in bacteria. The function is ...
 1-50 2.95e-05

Protein of unknown function (DUF2723); This family is conserved in bacteria. The function is not known.


Pssm-ID: 463208  Cd Length: 179  Bit Score: 44.84  E-value: 2.95e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2462540632   1 MALTVHFEEAATAKERSKVAKIGAFCCGLSLCNqHTIILYVLCIIPWILF 50
Cdd:pfam11028 123 FWLILKWEDEADEPRSDRWLVLIAYLIGLSIGV-HLLNLLTIPAIALLYY 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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