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putative disease resistance RPP13-like protein 3 isoform X2 [Oryza sativa Japonica Group]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
NB-ARC super family | cl26397 | NB-ARC domain; |
126-283 | 3.28e-25 | ||||
NB-ARC domain; The actual alignment was detected with superfamily member pfam00931: Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 100.92 E-value: 3.28e-25
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RX-CC_like | cd14798 | Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
8-67 | 2.22e-11 | ||||
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response. : Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 59.94 E-value: 2.22e-11
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P-loop_NTPase super family | cl38936 | P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ... |
94-150 | 9.53e-03 | ||||
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families. The actual alignment was detected with superfamily member cd19500: Pssm-ID: 476819 [Multi-domain] Cd Length: 182 Bit Score: 36.38 E-value: 9.53e-03
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Name | Accession | Description | Interval | E-value | ||||
NB-ARC | pfam00931 | NB-ARC domain; |
126-283 | 3.28e-25 | ||||
NB-ARC domain; Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 100.92 E-value: 3.28e-25
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RX-CC_like | cd14798 | Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
8-67 | 2.22e-11 | ||||
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response. Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 59.94 E-value: 2.22e-11
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Rx_N | pfam18052 | Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
8-47 | 4.98e-07 | ||||
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold. Pssm-ID: 436239 Cd Length: 93 Bit Score: 46.88 E-value: 4.98e-07
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RecA-like_Lon | cd19500 | lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ... |
94-150 | 9.53e-03 | ||||
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410908 [Multi-domain] Cd Length: 182 Bit Score: 36.38 E-value: 9.53e-03
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Name | Accession | Description | Interval | E-value | ||||
NB-ARC | pfam00931 | NB-ARC domain; |
126-283 | 3.28e-25 | ||||
NB-ARC domain; Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 100.92 E-value: 3.28e-25
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RX-CC_like | cd14798 | Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ... |
8-67 | 2.22e-11 | ||||
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response. Pssm-ID: 271353 [Multi-domain] Cd Length: 124 Bit Score: 59.94 E-value: 2.22e-11
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Rx_N | pfam18052 | Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ... |
8-47 | 4.98e-07 | ||||
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold. Pssm-ID: 436239 Cd Length: 93 Bit Score: 46.88 E-value: 4.98e-07
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AAA_16 | pfam13191 | AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
101-225 | 2.11e-04 | ||||
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 41.34 E-value: 2.11e-04
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NACHT | pfam05729 | NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
127-285 | 6.78e-03 | ||||
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 36.51 E-value: 6.78e-03
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RecA-like_Lon | cd19500 | lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ... |
94-150 | 9.53e-03 | ||||
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410908 [Multi-domain] Cd Length: 182 Bit Score: 36.38 E-value: 9.53e-03
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Blast search parameters | ||||
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