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Conserved domains on  [gi|166851898|ref|YP_001661362|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Eulemur mongoz]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.90e-65

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.85  E-value: 2.90e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898   1 MNLPLALTTTIILTLLLVTIAFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 166851898  81 TINPKLMLTVALILVSILAAGLAYEWLQKGLEWVE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.90e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.85  E-value: 2.90e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898   1 MNLPLALTTTIILTLLLVTIAFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 166851898  81 TINPKLMLTVALILVSILAAGLAYEWLQKGLEWVE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
21-112 1.29e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 101.73  E-value: 1.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898   21 AFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQT-INPKLMLTVALILVSILA 99
Cdd:pfam00507   4 SRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 166851898  100 AGLAYEWLQKGLE 112
Cdd:pfam00507  82 VGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-113 8.36e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.17  E-value: 8.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWA-SQTINPKLMLTVALILVSILAAGLAYEWLQKG 110
Cdd:COG0838   37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAvVFRELGWFGLIEMLVFIAILLVGLIYAWKKGA 114


                 ...
gi 166851898 111 LEW 113
Cdd:COG0838  115 LEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.90e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 192.85  E-value: 2.90e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898   1 MNLPLALTTTIILTLLLVTIAFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 166851898  81 TINPKLMLTVALILVSILAAGLAYEWLQKGLEWVE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 21-115 6.55e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 143.91  E-value: 6.55e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  21 AFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAA 100
Cdd:MTH00136  22 SFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTL 101

                         90
                 ....*....|....*
gi 166851898 101 GLAYEWLQKGLEWVE 115
Cdd:MTH00136 102 GLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 21-115 2.46e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 142.44  E-value: 2.46e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  21 AFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAA 100
Cdd:MTH00069  20 SFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTL 99

                         90
                 ....*....|....*
gi 166851898 101 GLAYEWLQKGLEWVE 115
Cdd:MTH00069 100 GLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 22-113 4.13e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 134.24  E-value: 4.13e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  22 FWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAG 101
Cdd:MTH00113  22 FWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLG 101

                         90
                 ....*....|..
gi 166851898 102 LAYEWLQKGLEW 113
Cdd:MTH00113 102 LIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 24-115 1.72e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 120.09  E-value: 1.72e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  24 LPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAGLA 103
Cdd:MTH00042  25 LPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLV 104

                         90
                 ....*....|..
gi 166851898 104 YEWLQKGLEWVE 115
Cdd:MTH00042 105 YEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 21-113 4.59e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 111.14  E-value: 4.59e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  21 AFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLtvALILVSILAA 100
Cdd:MTH00203  22 AFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLL--AFLFLILLTL 99

                         90
                 ....*....|...
gi 166851898 101 GLAYEWLQKGLEW 113
Cdd:MTH00203 100 GLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
21-112 1.29e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 101.73  E-value: 1.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898   21 AFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQT-INPKLMLTVALILVSILA 99
Cdd:pfam00507   4 SRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 166851898  100 AGLAYEWLQKGLE 112
Cdd:pfam00507  82 VGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 7.86e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 97.93  E-value: 7.86e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAGLAYEWLQKGL 111
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                 ..
gi 166851898 112 EW 113
Cdd:MTH00161 112 EW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 32-115 6.04e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 93.38  E-value: 6.04e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAGLAYEWLQKGL 111
Cdd:MTH00148  34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEGSL 113


                 ....
gi 166851898 112 EWVE 115
Cdd:MTH00148 114 DWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 32-115 3.20e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 88.90  E-value: 3.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAGLAYEWLQKGL 111
Cdd:MTH00202  34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSL 113


                 ....
gi 166851898 112 EWVE 115
Cdd:MTH00202 114 DWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-113 6.98e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 82.98  E-value: 6.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAGLAYEWLQKGL 111
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                 ..
gi 166851898 112 EW 113
Cdd:MTH00012 114 DW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-113 9.67e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.84  E-value: 9.67e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  31 TEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVsILAAGLAYEWLQKG 110
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGG 114


                 ...
gi 166851898 111 LEW 113
Cdd:MTH00055 115 LEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-113 8.36e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.17  E-value: 8.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWA-SQTINPKLMLTVALILVSILAAGLAYEWLQKG 110
Cdd:COG0838   37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAvVFRELGWFGLIEMLVFIAILLVGLIYAWKKGA 114


                 ...
gi 166851898 111 LEW 113
Cdd:COG0838  115 LEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 1.09e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 77.41  E-value: 1.09e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVsILAAGLAYEWLQKGL 111
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTMVGFLF-ILTLGLIYEWIKGGL 110


                 ..
gi 166851898 112 EW 113
Cdd:MTH00018 111 EW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-113 1.26e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 74.90  E-value: 1.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAsQTINP--KLMLTVALILVSILAAGLAYEWLQK 109
Cdd:PRK06602  40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWA-VSFREigWLGFVEAMIFILVLLVGLVYLWRKG 116


                 ....
gi 166851898 110 GLEW 113
Cdd:PRK06602 117 ALDW 120
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 9.40e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 72.66  E-value: 9.40e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  31 TEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVsILAAGLAYEWLQKG 110
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLI-VLAIGLAYEWIKGG 119


                 ...
gi 166851898 111 LEW 113
Cdd:MTH00030 120 LEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 32-113 9.95e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 54.61  E-value: 9.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAsqTINPKLMLTV---ALILVSILAAGLAYEWLQ 108
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWA--MSFDVLGVSAfieALIFVLILIVGLVYAWRK 114


                 ....*
gi 166851898 109 KGLEW 113
Cdd:CHL00022 115 GALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 7.58e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 49.67  E-value: 7.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  33 KYSPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVSILAAgLAYEWLQKG 110
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVA-YAYVWRRGG 115


                 ...
gi 166851898 111 LEW 113
Cdd:PRK07928 116 LEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 8.05e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 49.74  E-value: 8.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  32 EKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWASQTINPKLMLTVA-LILVSILAAGLAYEWLQKG 110
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFALIEmLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 166851898 111 LEW 113
Cdd:PRK07756 119 LQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 2.41e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 43.12  E-value: 2.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  33 KYSPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAsqtINPKLMLTVALI----LVSILAAGLAYEWLQ 108
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWA---VDFKLLGLFGLIemllFIVLLTIGFIYAWKK 120


                 ....*
gi 166851898 109 KGLEW 113
Cdd:PRK08489 121 GALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 28-114 5.09e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.80  E-value: 5.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166851898  28 NVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLpwasqTINPKLMLTVALILVSILAAGLAYEWL 107
Cdd:MTH00092  29 KFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL-----LVSDFSSLISFFMLMIFIFFGFYMEWW 103


                 ....*..
gi 166851898 108 QKGLEWV 114
Cdd:MTH00092 104 YGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-76 3.08e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.88  E-value: 3.08e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 166851898  34 YSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 33-104 1.89e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 35.35  E-value: 1.89e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 166851898  33 KYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTINPKLMLTVALILVsILAAGLAY 104
Cdd:PRK06073  40 KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDLLLLIVVALV-LMYPVLYY 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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