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Conserved domains on  [gi|186920100|ref|YP_001874755|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Sthenoteuthis oualaniensis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009590)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 4.75e-39

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214437  Cd Length: 163  Bit Score: 130.39  E-value: 4.75e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   1 MSLLFVVSVGFSLSSICMMVIQPLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSS 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100  81 KVFMYFFMILCGFLMMNFFVTKELVSVDMKDISLFDYSFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKICYYCEG 160
Cdd:MTH00152  81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                 ...
gi 186920100 161 PLR 163
Cdd:MTH00152 161 SLR 163
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 4.75e-39

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 130.39  E-value: 4.75e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   1 MSLLFVVSVGFSLSSICMMVIQPLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSS 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100  81 KVFMYFFMILCGFLMMNFFVTKELVSVDMKDISLFDYSFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKICYYCEG 160
Cdd:MTH00152  81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                 ...
gi 186920100 161 PLR 163
Cdd:MTH00152 161 SLR 163
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
23-154 1.53e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 37.10  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   23 PLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSSKVFMYFFM-ILCGFLMMNFFVT 101
Cdd:pfam00499   9 PVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAaLLLGLLLLALLLL 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 186920100  102 KELVSVDMKDISLFDYSFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKI 154
Cdd:pfam00499  89 VLLSASLTPAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 4.75e-39

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 130.39  E-value: 4.75e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   1 MSLLFVVSVGFSLSSICMMVIQPLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSS 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100  81 KVFMYFFMILCGFLMMNFFVTKELVSVDMKDISLFDYSFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKICYYCEG 160
Cdd:MTH00152  81 FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                 ...
gi 186920100 161 PLR 163
Cdd:MTH00152 161 SLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-165 3.22e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 71.58  E-value: 3.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   1 MSLLFVVSVGFSLSSICMMVIQPLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSS 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFFK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100  81 KVFMYFFMILCGFLMMNFFVTKELVSVDMKDISLFDYSFTSlaggstIMMYDNFLCYLLLGIILLFVLISVVKICYYCEG 160
Cdd:MTH00212  81 KYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSK------ILSNNNIPILLFLGLILLIALLMVVKICQYYKG 154


                 ....*
gi 186920100 161 PLRVF 165
Cdd:MTH00212 155 PLRPF 159
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 11-166 6.98e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 67.91  E-value: 6.98e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100  11 FSLSSICMMVIQPLSLGFMLMMITLCVSGLMGMISFS-WYGYLLFLVYIGGLLVMFMYVISLIPN-LIFLSSKVFMYFFM 88
Cdd:MTH00166   9 LILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSfWFSYILFLIFLGGMLVLFIYITSLASNeKFKFSLKLLILFLL 88

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 186920100  89 ILCGFLMMNFFVTKELVSVDMKDISLFDYSFtslaggSTIMMYDNFLCYLLLGIILLFVLISVVKICYYCEGPLRVFK 166
Cdd:MTH00166  89 MLLLMLNNFIKNSEMSNFNNNFNFFENSFSL------SKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 1-166 2.13e-08

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 50.63  E-value: 2.13e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   1 MSLLFVVSVGFSLSSICMMVIQPLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSS 80
Cdd:MTH00015   1 MSLSFFLILMISLTCSLFLATTPITLGINILMMALLLATTMASALSSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLNLG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100  81 KVFMYFFMILCGFLMMNFFVTKELVSvdmkdislfdySFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKICYYCEG 160
Cdd:MTH00015  81 PMAKYTLITLLTLSTTLKLTNPPSPS-----------FFSSTQGNTFLYQPENAPLLIFLALILLLTMVIVVKLTRRSSG 149


                 ....*.
gi 186920100 161 PLRVFK 166
Cdd:MTH00015 150 PLRPFK 155
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-155 1.28e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 40.36  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   1 MSLLFVVSVGFSLSSICMMV-IQPLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLS 79
Cdd:MTH00214   2 LYFVFLLMFGFLLGLMMVASsPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPES 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 186920100  80 SKVFMYFFMILCGFLMMNFFVTKELVSVDMKDISLFDYSFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKIC 155
Cdd:MTH00214  82 WGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELV 157
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
23-154 1.53e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 37.10  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186920100   23 PLSLGFMLMMITLCVSGLMGMISFSWYGYLLFLVYIGGLLVMFMYVISLIPNLIFLSSKVFMYFFM-ILCGFLMMNFFVT 101
Cdd:pfam00499   9 PVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAaLLLGLLLLALLLL 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 186920100  102 KELVSVDMKDISLFDYSFTSLAGGSTIMMYDNFLCYLLLGIILLFVLISVVKI 154
Cdd:pfam00499  89 VLLSASLTPAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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