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Conserved domains on  [gi|190349490|ref|YP_001974651|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Cyclemys atripons]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009571)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 3.39e-59

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 177.38  E-value: 3.39e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   2 NLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 190349490  82 LPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 3.39e-59

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 177.38  E-value: 3.39e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   2 NLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 190349490  82 LPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
21-113 1.42e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 99.42  E-value: 1.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   21 LNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFIWAFIIMSLL 99
Cdd:pfam00507   3 LSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 190349490  100 TLGLVYEWIQGGLE 113
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-114 3.89e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 86.33  E-value: 3.89e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  12 LALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFI 90
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 190349490  91 WAFIIMSLLTLGLVYEWIQGGLEW 114
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 3.39e-59

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 177.38  E-value: 3.39e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   2 NLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 190349490  82 LPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 5.77e-56

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 169.33  E-value: 5.77e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 190349490  81 QLPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 1.33e-51

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 158.23  E-value: 1.33e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   3 LMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 190349490  83 PHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 2.28e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 127.36  E-value: 2.28e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISItMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00106   1 MNLMLTL-LTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 190349490  81 QLPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 2.86e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 124.71  E-value: 2.86e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 190349490  81 QLPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 4.59e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 113.84  E-value: 4.59e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 190349490  81 QLPHPiyTFIWAFIIMSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
21-113 1.42e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 99.42  E-value: 1.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   21 LNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFIWAFIIMSLL 99
Cdd:pfam00507   3 LSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRElGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 190349490  100 TLGLVYEWIQGGLE 113
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.24e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 92.61  E-value: 1.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISITMIYLALPAILTMLnYWFTLTK--PDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPW 78
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLL-GLVLSKRsySDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQ 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 190349490  79 AIQLPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWAE 116
Cdd:MTH00148  80 SLGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 3.38e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 88.68  E-value: 3.38e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   3 LMISITMIYLALPAILTMLNYWFTL-TKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKkSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 190349490  82 LPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 14-114 1.33e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 87.42  E-value: 1.33e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  14 LPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFIWA 92
Cdd:MTH00018  13 LSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQiAPFGFWTM 90

                         90       100
                 ....*....|....*....|..
gi 190349490  93 FIIMSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00018  91 VGFLFILTLGLIYEWIKGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-114 3.89e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 86.33  E-value: 3.89e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  12 LALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFI 90
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 190349490  91 WAFIIMSLLTLGLVYEWIQGGLEW 114
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 12-114 9.26e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 85.53  E-value: 9.26e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  12 LALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPHPIYTFIW 91
Cdd:MTH00055  16 IGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLFGFW 93

                         90       100
                 ....*....|....*....|....
gi 190349490  92 A-FIIMSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00055  94 VmYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 2.14e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 84.52  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISITMIYLALPAILTMLNYWF-TLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 190349490  80 IQLPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEWA 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-115 6.85e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 82.99  E-value: 6.85e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  10 IYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPHPIYT- 88
Cdd:PRK06602  17 VAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWLg 94

                         90       100
                 ....*....|....*....|....*..
gi 190349490  89 FIWAFIIMSLLTLGLVYEWIQGGLEWA 115
Cdd:PRK06602  95 FVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 31-116 1.30e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 82.35  E-value: 1.30e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  31 DNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPHPIYTFIWAFIIMSLLTLGLVYEWIQG 110
Cdd:MTH00202  32 DREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEG 111


                 ....*.
gi 190349490 111 GLEWAE 116
Cdd:MTH00202 112 SLDWVK 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 4-114 2.46e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 79.21  E-value: 2.46e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   4 MISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLP 83
Cdd:MTH00030  13 LLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFN 90

                         90       100       110
                 ....*....|....*....|....*....|..
gi 190349490  84 H-PIYTFIWAFIIMSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00030  91 QlNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 33-114 6.62e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 57.69  E-value: 6.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  33 EKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPlpWAIQLPH-PIYTFIWAFIIMSLLTLGLVYEWIQGG 111
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVlGVSAFIEALIFVLILIVGLVYAWRKGA 116


                 ...
gi 190349490 112 LEW 114
Cdd:CHL00022 117 LEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 28-114 1.39e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 54.29  E-value: 1.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  28 TKPDNEKLSPYVCGFDPLKTTRPP--FSIRFFLVAILFLLFDLEIALLLPlpWAIQLPH-PIYTFIWAFIIMSLLTLGLV 104
Cdd:PRK07928  31 KRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDAlGVFGLVEMALFMLTVFVAYA 108

                         90
                 ....*....|
gi 190349490 105 YEWIQGGLEW 114
Cdd:PRK07928 109 YVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
34-114 1.43e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.59  E-value: 1.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  34 KLSPYVCGFDPLKTTRPpFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFIWAFIIMSLLTLGLVYEWIQGGL 112
Cdd:PRK08489  47 KLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFM--FPWAVDFKLlGLFGLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 190349490 113 EW 114
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 1.66e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 51.05  E-value: 1.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490   1 MNLMISITMIYLALPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLpwai 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                         90       100       110
                 ....*....|....*....|....*....|....
gi 190349490  81 qLPHPIYTFIWAFIIMSLLTLGLVYEWIQGGLEW 114
Cdd:MTH00092  77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
14-114 2.84e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.90  E-value: 2.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  14 LPAILTMLNYWFTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPH-PIYTFIWA 92
Cdd:PRK07756  22 LPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYDKlGLFALIEM 99

                         90       100
                 ....*....|....*....|..
gi 190349490  93 FIIMSLLTLGLVYEWIQGGLEW 114
Cdd:PRK07756 100 LIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 25-114 5.74e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 41.81  E-value: 5.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349490  25 FTLTKPDNEKLSPYVCGFDPLKTTRPPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLphpIYTFIWAFIIMSLLTLGLV 104
Cdd:MTH00060  28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLL---FYNFWYYYFFLLLLFLGFV 104

                         90
                 ....*....|
gi 190349490 105 YEWIQGGLEW 114
Cdd:MTH00060 105 VELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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