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Conserved domains on  [gi|190349379|ref|YP_001974691|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Cuora mouhotii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 6.83e-33

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00126:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 109.67  E-value: 6.83e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  5 MHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASSW 84
Cdd:MTH00126  4 VHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVATAR 83

                        90
                ....*....|....*
gi 190349379 85 THGSSHLQNLNLLQC 99
Cdd:MTH00126 84 THGTDRLQNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 5-99 6.83e-33

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 109.67  E-value: 6.83e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  5 MHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASSW 84
Cdd:MTH00126  4 VHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVATAR 83

                        90
                ....*....|....*
gi 190349379 85 THGSSHLQNLNLLQC 99
Cdd:MTH00126 84 THGTDRLQNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-99 3.03e-11

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 54.49  E-value: 3.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379   4 SMHFTSFCAFIISTLGFLLhQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASS 83
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|....*.
gi 190349379  84 WTHGSSHLQNLNLLQC 99
Cdd:pfam00420 80 RTHGTDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 5-99 6.83e-33

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 109.67  E-value: 6.83e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  5 MHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASSW 84
Cdd:MTH00126  4 VHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVATAR 83

                        90
                ....*....|....*
gi 190349379 85 THGSSHLQNLNLLQC 99
Cdd:MTH00126 84 THGTDRLQNLNLLQC 98
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 2-99 3.25e-32

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 108.01  E-value: 3.25e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  2 IMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVA 81
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 190349379 82 SSWTHGSSHLQNLNLLQC 99
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 2-99 3.93e-30

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 102.76  E-value: 3.93e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  2 IMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVA 81
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*...
gi 190349379 82 SSWTHGSSHLQNLNLLQC 99
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 4-99 1.13e-20

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 78.82  E-value: 1.13e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  4 SMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASS 83
Cdd:MTH00107  3 LIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVMVS 82

                        90
                ....*....|....*.
gi 190349379 84 WTHGSSHLQNLNLLQC 99
Cdd:MTH00107 83 NTYGTDYVQNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 5-97 4.14e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 66.89  E-value: 4.14e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  5 MHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASSW 84
Cdd:MTH00181  1 MMFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNR 80

                        90
                ....*....|...
gi 190349379 85 THGSSHLQNLNLL 97
Cdd:MTH00181 81 THGSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 2-98 4.74e-12

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 56.85  E-value: 4.74e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  2 IMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVA 81
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*..
gi 190349379 82 SSWTHGSSHLQNLNLLQ 98
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-99 3.03e-11

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 54.49  E-value: 3.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379   4 SMHFTSFCAFIISTLGFLLhQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASS 83
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|....*.
gi 190349379  84 WTHGSSHLQNLNLLQC 99
Cdd:pfam00420 80 RTHGTDDVDSLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-99 9.17e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 48.43  E-value: 9.17e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  1 MIMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLapMLMLTFSACEAGMGLSLLV 80
Cdd:MTH00188  1 MFFSMILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLS--LVLLTFAACEASVGLALLV 78

                        90
                ....*....|....*....
gi 190349379 81 ASSWTHGSSHLQNLNLLQC 99
Cdd:MTH00188 79 SLIRSHGSDYVSSLNLIKC 97
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-93 8.76e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 42.83  E-value: 8.76e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  3 MSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLapMLMLTFSACEAGMGLSLLVAS 82
Cdd:MTH00162  1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFL--LFFLTFSVCEGALGLSILVSM 78

                        90
                ....*....|.
gi 190349379 83 SWTHGSSHLQN 93
Cdd:MTH00162 79 IRSHGNDYFSS 89
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 2-99 1.36e-06

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 42.82  E-value: 1.36e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  2 IMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLfVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVA 81
Cdd:MTH00013  1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSL-ALFIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVL 79

                        90
                ....*....|....*...
gi 190349379 82 SSWTHGSSHLQNLNLLQC 99
Cdd:MTH00013 80 MTRSYGNDMLKSLTSNKC 97
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 11-98 5.19e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 38.47  E-value: 5.19e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379 11 CAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLVASSWTHGSSH 90
Cdd:MTH00180 11 ILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIA 90


                ....*...
gi 190349379 91 LQNLNLLQ 98
Cdd:MTH00180 91 VKSLNLLR 98
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-99 3.37e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 36.36  E-value: 3.37e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  1 MIMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFValSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLV 80
Cdd:MTH00149  1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLV--MMFSSSGLISFSSYLFLIILTFGACEASLGLSLLV 78

                        90
                ....*....|....*....
gi 190349379 81 ASSWTHGSSHLQNLNLLQC 99
Cdd:MTH00149 79 SLIRLHGNDYVSSLSSLKF 97
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 1-98 8.40e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 35.42  E-value: 8.40e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190349379  1 MIMSMHFTSFCAFIISTLGFLLHQAHLIPTLLCLEGMMLSLFVALSMWSIQLEVSSFMLAPMLMLTFSACEAGMGLSLLV 80
Cdd:MTH00001  1 MYYKYLILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMV 80

                        90
                ....*....|....*...
gi 190349379 81 ASSWTHGSSHLQNLNLLQ 98
Cdd:MTH00001 81 AYYRIRGTISLKSLNSLR 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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